Guide to the Human Genome
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Name: PLOD3 Sequence: fasta or formatted (738aa) NCBI GI: 4505891
Description:

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 precursor

Referenced in:

Collagen
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         35           2
 C cysteine            1.4         10           1
 D aspartate           6.6         49           5
 E glutamate           6.6         49           2
 F phenylalanine       5.0         37           2
 G glycine             7.7         57           3
 H histidine           3.1         23           2
 I isoleucine          3.1         23           2
 K lysine              3.4         25           2
 L leucine            11.4         84           4
 M methionine          2.0         15           1
 N asparagine          3.5         26           2
 P proline             6.8         50           3
 Q glutamine           3.9         29           1
 R arginine            7.3         54           2
 S serine              5.3         39           2
 T threonine           4.6         34           2
 V valine              6.8         50           2
 W tryptophan          2.3         17           1
 Y tyrosine            4.3         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr... 
PLOD2                 0.606   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD2                 0.599   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD1                 0.587   lysyl hydroxylase 1 precursor 
GLT25D2               0.049   glycosyltransferase 25 domain containing 2 
CERCAM                0.035   cerebral endothelial cell adhesion molecule 1 [Homo...
GLT25D1               0.028   glycosyltransferase 25 domain containing 1 
OGFOD2                0.014   2-oxoglutarate and iron-dependent oxygenase domain c...
HOMEZ                 0.004   homeodomain leucine zipper protein 
PTAR1                 0.004   protein prenyltransferase alpha subunit repeat cont...
FGFRL1                0.004   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.004   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.004   fibroblast growth factor receptor-like 1 precursor [...
DST                   0.003   dystonin isoform 4 
DST                   0.003   dystonin isoform 3 
DST                   0.003   dystonin isoform 2 
DST                   0.003   dystonin isoform 1 
LEPREL1               0.003   leprecan-like 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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