Guide to the Human Genome
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Name: PLOD2 Sequence: fasta or formatted (758aa) NCBI GI: 33636742
Description:

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 isoform a precursor

Referenced in:

Collagen
Additional Protein Modifications

Other entries for this name:
alt prot [737aa] procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 isoform b prec...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         36           2
 C cysteine            1.7         13           1
 D aspartate           6.6         50           3
 E glutamate           6.2         47           2
 F phenylalanine       5.7         43           2
 G glycine             6.7         51           3
 H histidine           3.0         23           2
 I isoleucine          5.8         44           2
 K lysine              7.1         54           2
 L leucine             8.2         62           4
 M methionine          2.1         16           1
 N asparagine          6.2         47           2
 P proline             5.3         40           2
 Q glutamine           3.2         24           2
 R arginine            4.5         34           1
 S serine              4.4         33           2
 T threonine           4.6         35           1
 V valine              7.7         58           2
 W tryptophan          1.8         14           1
 Y tyrosine            4.5         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i... 
PLOD2                 0.965   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD3                 0.584   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
PLOD1                 0.581   lysyl hydroxylase 1 precursor 
GLT25D2               0.041   glycosyltransferase 25 domain containing 2 
GLT25D1               0.027   glycosyltransferase 25 domain containing 1 
CERCAM                0.024   cerebral endothelial cell adhesion molecule 1 [Homo...
OGFOD2                0.012   2-oxoglutarate and iron-dependent oxygenase domain c...
RINL                  0.005   Ras and Rab interactor-like 
EPN2                  0.004   epsin 2 isoform a 
EPN2                  0.004   epsin 2 isoform b 
PCSK2                 0.003   proprotein convertase subtilisin/kexin type 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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