Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GLT25D2 Sequence: fasta or formatted (626aa) NCBI GI: 16506820
Description:

glycosyltransferase 25 domain containing 2

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         41           2
 C cysteine            1.0          6           1
 D aspartate           6.4         40           2
 E glutamate           7.8         49           2
 F phenylalanine       3.7         23           1
 G glycine             3.5         22           1
 H histidine           2.6         16           1
 I isoleucine          5.3         33           2
 K lysine              5.8         36           3
 L leucine             9.7         61           4
 M methionine          2.9         18           1
 N asparagine          3.5         22           1
 P proline             7.0         44           3
 Q glutamine           3.4         21           1
 R arginine            6.5         41           2
 S serine              5.4         34           2
 T threonine           5.6         35           2
 V valine              6.1         38           2
 W tryptophan          2.4         15           1
 Y tyrosine            5.0         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycosyltransferase 25 domain containing 2 
GLT25D1               0.644   glycosyltransferase 25 domain containing 1 
CERCAM                0.485   cerebral endothelial cell adhesion molecule 1 [Homo...
PLOD3                 0.058   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
PLOD2                 0.058   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD2                 0.051   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD1                 0.051   lysyl hydroxylase 1 precursor 
LRP1B                 0.006   low density lipoprotein-related protein 1B precursor...
ARL6IP4               0.006   SRp25 nuclear protein isoform 4 
ARL6IP4               0.006   SRp25 nuclear protein isoform 3 
ARL6IP4               0.006   SRp25 nuclear protein isoform 2 
ARL6IP4               0.006   SRp25 nuclear protein isoform 1 
MET                   0.005   met proto-oncogene isoform b precursor 
MET                   0.005   met proto-oncogene isoform a precursor 
LOC100129218          0.005   PREDICTED: hypothetical protein 
LOC100129218          0.005   PREDICTED: hypothetical protein 
LOC100129218          0.005   PREDICTED: hypothetical protein 
MED24                 0.005   mediator complex subunit 24 isoform 2 
MED24                 0.005   mediator complex subunit 24 isoform 1 
AUP1                  0.004   ancient ubiquitous protein 1 
OLFM4                 0.004   olfactomedin 4 precursor 
PLCB3                 0.004   phospholipase C beta 3 
TBR1                  0.004   T-box, brain, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press