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Search of human proteins with 31088934
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo
sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo sa... 317 2e-87
gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo sa... 248 2e-66
gi|194306537 gametocyte specific factor 1 [Homo sapiens] 77 5e-15
gi|71143123 U11/U12 snRNP 48K [Homo sapiens] 37 0.006
gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 30 0.74
gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo... 30 0.96
gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo... 30 0.96
gi|7662018 PHD finger protein 3 [Homo sapiens] 29 1.6
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens] 28 2.1
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens] 28 2.1
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 28 2.8
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 28 3.7
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens] 28 3.7
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens] 28 3.7
gi|116805330 small conductance calcium-activated potassium chann... 27 4.8
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 27 4.8
gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] 27 4.8
gi|155722990 solute carrier family 4 (anion exchanger), member 1... 27 4.8
gi|208431810 hypothetical protein LOC51307 [Homo sapiens] 27 4.8
gi|7706139 hypothetical protein LOC51307 [Homo sapiens] 27 4.8
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 27 6.2
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 27 6.2
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 27 6.2
gi|126116565 MYC binding protein 2 [Homo sapiens] 27 6.2
gi|214010216 SMC6 protein [Homo sapiens] 27 6.2
gi|13375848 SMC6 protein [Homo sapiens] 27 6.2
gi|209693439 synuclein, gamma (breast cancer-specific protein 1)... 27 8.2
gi|226493203 coiled-coil domain containing 76 [Homo sapiens] 27 8.2
gi|31581524 cordon-bleu homolog [Homo sapiens] 27 8.2
gi|62899035 establishment of cohesion 1 homolog 2 [Homo sapiens] 27 8.2
>gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo
sapiens]
Length = 148
Score = 317 bits (812), Expect = 2e-87
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTF 120
AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTF
Sbjct: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTF 120
Query: 121 FPQKVVCENDTKESARETSPQKILRPGQ 148
FPQKVVCENDTKESARETSPQKILRPGQ
Sbjct: 121 FPQKVVCENDTKESARETSPQKILRPGQ 148
>gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo
sapiens]
Length = 123
Score = 248 bits (632), Expect = 2e-66
Identities = 123/148 (83%), Positives = 123/148 (83%), Gaps = 25/148 (16%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTF 120
AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ TF
Sbjct: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ-------------------------TF 95
Query: 121 FPQKVVCENDTKESARETSPQKILRPGQ 148
FPQKVVCENDTKESARETSPQKILRPGQ
Sbjct: 96 FPQKVVCENDTKESARETSPQKILRPGQ 123
>gi|194306537 gametocyte specific factor 1 [Homo sapiens]
Length = 167
Score = 77.0 bits (188), Expect = 5e-15
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
++PE CPYD +H+I RF YHL CR+ +P A K+ATC +NA H VP + H
Sbjct: 9 LDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHI 68
Query: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVD 107
+ C +RS + E+D N + S Q + C P + W+ D
Sbjct: 69 SSCDDRSCI-EQDVVNQTR----SLRQETLAESTWQCPPCDEDWDKD 110
>gi|71143123 U11/U12 snRNP 48K [Homo sapiens]
Length = 339
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 2 EPEAFE----ICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYN 46
E EA E ICPYD +H +P S H+ASCR + K+ YN
Sbjct: 47 EEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYN 95
Score = 27.3 bits (59), Expect = 4.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 39 KMATCKYNACHVVPIKNLEEHEAVC----VNRSAVEEEDTENP----LKVSPPSSEQNDD 90
++ C Y++ H +P +L +H A C + + EE++ NP V PS N D
Sbjct: 54 EVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYENVKIPSITLNKD 113
Query: 91 TQ 92
+Q
Sbjct: 114 SQ 115
>gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog A
[Homo sapiens]
Length = 771
Score = 30.0 bits (66), Expect = 0.74
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 66 RSAVEEEDTENP-----LKVSPPSSEQNDDTQQVSPCLPSPDI-----WNVDGANCQHVF 115
R A++E+ ++N L+V+ S E+ T+ V L PD+ N DG N +
Sbjct: 320 RQAMQEQLSKNKELTQKLQVASESEEEEGGTEDVEELLV-PDVVNEVQMNADGPN---PW 375
Query: 116 VLKTFFPQKVVCENDTKESARETSPQKI 143
+L++ C +DTKE+A + P+++
Sbjct: 376 MLRS-------CTSDTKEAATQEDPEQL 396
>gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo
sapiens]
Length = 581
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 19 LSRFQYHLASCRRKNPKKAKKMATCKYNACHVVP-IKNLEEHEAVCVNRSAVEEEDTENP 77
L Q HL + + KK ++ K + V ++NL+E E+ C +R +D+E P
Sbjct: 432 LQGMQQHLLKVQEEYKKKEAELEKLKDDKLQVEKMLENLKEKES-CASRLCASNQDSEYP 490
Query: 78 LKVSPPSS 85
L+ + SS
Sbjct: 491 LEKTMNSS 498
>gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo
sapiens]
Length = 610
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 19 LSRFQYHLASCRRKNPKKAKKMATCKYNACHVVP-IKNLEEHEAVCVNRSAVEEEDTENP 77
L Q HL + + KK ++ K + V ++NL+E E+ C +R +D+E P
Sbjct: 461 LQGMQQHLLKVQEEYKKKEAELEKLKDDKLQVEKMLENLKEKES-CASRLCASNQDSEYP 519
Query: 78 LKVSPPSS 85
L+ + SS
Sbjct: 520 LEKTMNSS 527
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 28.9 bits (63), Expect = 1.6
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 71 EEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDG-ANCQHVFVLKTF-FPQKVVCE 128
+ED EN L Q++ T SPC + N+DG +C V T PQ + +
Sbjct: 1598 QEDQENNL--------QDNQTSNSSPCRSNVGKGNIDGNVSCSENLVANTARSPQFINLK 1649
Query: 129 NDTKESARETSP 140
D +++A + P
Sbjct: 1650 RDPRQAAGRSQP 1661
>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
Length = 1111
Score = 28.5 bits (62), Expect = 2.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 53 IKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPS 100
+KNL E + NR A EE + +S S+ +D TQQ L S
Sbjct: 952 LKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGS 999
>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
Length = 1193
Score = 28.5 bits (62), Expect = 2.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 53 IKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPS 100
+KNL E + NR A EE + +S S+ +D TQQ L S
Sbjct: 952 LKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGS 999
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 28.1 bits (61), Expect = 2.8
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 79 KVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTFFPQKV-VCENDTKESARE 137
K+SPP S + Q V + D A+ Q + L+ FF ++ DTK SA
Sbjct: 750 KLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAFGDTKFSAVL 809
Query: 138 TSPQKILRPG 147
P + PG
Sbjct: 810 VEPPPMSLPG 819
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 27.7 bits (60), Expect = 3.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 30 RRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQND 89
RR++ K + K CH K + + + V + +E+ +PP+ Q+
Sbjct: 439 RRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVKRSSNPPARSQSS 498
Query: 90 DTQQVSP 96
DT+Q SP
Sbjct: 499 DTEQQSP 505
>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
Length = 1184
Score = 27.7 bits (60), Expect = 3.7
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 34 PKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ 93
P ++T +A + P + + V + S VEE+ N + P SS +
Sbjct: 383 PSPHNILSTSLPDAAWIPPTREVPRKPQV-LPHSHVEEDTDPNSVHSIPRSSPEGSTKDL 441
Query: 94 VSPCLPSPDIWNVDGANCQHV 114
+ C + W +D C +
Sbjct: 442 IETCCAAGQQWAIDNDECLEI 462
>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
Length = 1231
Score = 27.7 bits (60), Expect = 3.7
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 34 PKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ 93
P ++T +A + P + + V + S VEE+ N + P SS +
Sbjct: 383 PSPHNILSTSLPDAAWIPPTREVPRKPQV-LPHSHVEEDTDPNSVHSIPRSSPEGSTKDL 441
Query: 94 VSPCLPSPDIWNVDGANCQHV 114
+ C + W +D C +
Sbjct: 442 IETCCAAGQQWAIDNDECLEI 462
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 27.3 bits (59), Expect = 4.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 30 RRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSS 85
R NP M++CKY+ + P+ L R+ +E E PL++ PS+
Sbjct: 165 RDSNPFTEIAMSSCKYSGGVMKPLSRLS-----ASRRNLIEAETEGQPLQLFSPSN 215
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 27.3 bits (59), Expect = 4.8
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 23 QYHLASCRRKNPKKAKKMATCKYNACHV----------VPIKNLEEHEAVCVNRSAVEEE 72
Q AS KN KAK++ K A H+ +P++ H+ + + E E
Sbjct: 689 QIRKASNTSKNISKAKQLIE-KAKALHISRSKVTEEIAIPLRRSSRHQTLPERKKLSETE 747
Query: 73 DTENPLKVSPPSSEQNDDTQQVSPCL 98
D+ + SP + + + Q+ CL
Sbjct: 748 DSVIIIDSSPTALKHPEKNQKKLQCL 773
>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 4.8
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 8 ICPYDPHHRIPLSRFQYHLASCRRK-----NP--KKAKKMATCKYNACHVVPIKNLEEHE 60
IC P +R P R Y C RK NP + +K V P++N ++ +
Sbjct: 13 ICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDD 72
Query: 61 AVCVNRSAVEEED 73
++ ++ EEED
Sbjct: 73 SIADFLNSDEEED 85
>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Homo sapiens]
Length = 796
Score = 27.3 bits (59), Expect = 4.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTE 75
KK + M C AC ++ L EAV R A ED +
Sbjct: 422 KKKEAMIQCSLEACRILDTLGLLRQEAVSRKRKAKNWEDED 462
>gi|208431810 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 27.3 bits (59), Expect = 4.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 72 EDTENPLKVSPPSSEQNDDTQQVSPCLP 99
+D+ P SP S D + +SPC P
Sbjct: 200 QDSSRPCAASPQSGSWESDAESLSPCPP 227
>gi|7706139 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 27.3 bits (59), Expect = 4.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 72 EDTENPLKVSPPSSEQNDDTQQVSPCLP 99
+D+ P SP S D + +SPC P
Sbjct: 200 QDSSRPCAASPQSGSWESDAESLSPCPP 227
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 26.9 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 177 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 224
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 26.9 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 203 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 250
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 26.9 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 279 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 326
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 26.9 bits (58), Expect = 6.2
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEE---HEAVCVNRSAVE 70
HH L + + RK+ + M + C+V+ +L + H + + VE
Sbjct: 3512 HH--DLEGLEIAMKQALRKSACRVFAMEAFNWLLCNVIQTTSLHDILWHFVASLTPAPVE 3569
Query: 71 ---EEDTENPLKVSPPSSEQNDDTQ 92
EED EN K S +SEQ DT+
Sbjct: 3570 PEEEEDEEN--KTSKENSEQEKDTR 3592
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEED 73
H+ L R Q H + K K N + ++N+EEH++V + E ++
Sbjct: 698 HNEELLKRCQLHYKELKMKIRK----------NISEIRELENIEEHQSVDIATLEDEAQE 747
Query: 74 TENPLKVSPPSSEQNDDTQQ 93
++ +K+ EQ + +
Sbjct: 748 NKSKMKMVEEHMEQQKENME 767
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEED 73
H+ L R Q H + K K N + ++N+EEH++V + E ++
Sbjct: 698 HNEELLKRCQLHYKELKMKIRK----------NISEIRELENIEEHQSVDIATLEDEAQE 747
Query: 74 TENPLKVSPPSSEQNDDTQQ 93
++ +K+ EQ + +
Sbjct: 748 NKSKMKMVEEHMEQQKENME 767
>gi|209693439 synuclein, gamma (breast cancer-specific protein 1)
[Homo sapiens]
Length = 127
Score = 26.6 bits (57), Expect = 8.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 26 LASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSS 85
+ S K ++A ++ ++ + V K +EE E + V V +ED L+ S P
Sbjct: 52 VTSVAEKTKEQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKED----LRPSAPQQ 107
Query: 86 E 86
E
Sbjct: 108 E 108
>gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
Length = 481
Score = 26.6 bits (57), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 8 ICPYDPHHRIPLSRFQYHLASCR-RKNPK 35
+CP DP H + + HL C R+ PK
Sbjct: 58 LCPLDPKHTVYEDQLAKHLKKCNSREKPK 86
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 26.6 bits (57), Expect = 8.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 57 EEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANC 111
E E V V E+ TE+ +S PS + D+QQ S + D W D +C
Sbjct: 387 EAEETVSVGSCFASEDTTEDSGVMSSPSDIVSLDSQQDS--MKYKDKWATDQEDC 439
>gi|62899035 establishment of cohesion 1 homolog 2 [Homo sapiens]
Length = 601
Score = 26.6 bits (57), Expect = 8.2
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 29 CRRKNPKKAKKMATCKYNA--CHVVPI----KNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
C +KN KK +K T KY H+ P+ +N +++ + + VE+E+ +
Sbjct: 132 CSKKNNKKPQKSLTAKYQPKYRHIKPVSRNSRNSKQNRV--IYKPIVEKENNCH------ 183
Query: 83 PSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTFFPQKVVCENDTKESARETSPQK 142
S+E N + +V P + GA FV K +K EN+ + S +
Sbjct: 184 -SAENNSNAPRVLSQKIKPQVTLQGGA---AFFVRKKSSLRKSSLENEPSLGRTQKSKSE 239
Query: 143 IL 144
++
Sbjct: 240 VI 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,873,547
Number of Sequences: 37866
Number of extensions: 301622
Number of successful extensions: 1002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 46
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.