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Search of human proteins with 30795119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
(1043 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 2123 0.0
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 2123 0.0
gi|8922188 F-box only protein 6 [Homo sapiens] 40 0.011
gi|34878749 F-box protein 44 isoform 2 [Homo sapiens] 39 0.020
gi|34878735 F-box protein 44 isoform 1 [Homo sapiens] 39 0.020
gi|34878753 F-box protein 44 isoform 2 [Homo sapiens] 39 0.020
gi|62388868 F-box protein 44 isoform 1 [Homo sapiens] 39 0.020
gi|42558258 F-box protein 33 [Homo sapiens] 38 0.057
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 37 0.074
gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens] 37 0.074
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 35 0.37
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 35 0.48
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 35 0.48
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 35 0.48
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 34 0.63
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 34 0.63
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 34 0.63
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 34 0.63
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 34 0.63
gi|101943240 general transcription factor IIIC, polypeptide 1, a... 34 0.63
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens] 34 0.63
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 34 0.82
gi|87196343 PDZ domain containing 2 [Homo sapiens] 33 1.1
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 33 1.1
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 33 1.1
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 33 1.1
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 33 1.4
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 33 1.4
gi|37221175 PH domain and leucine rich repeat protein phosphatas... 33 1.4
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 33 1.4
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sapiens]
Length = 1094
Score = 2123 bits (5502), Expect = 0.0
Identities = 1043/1043 (100%), Positives = 1043/1043 (100%)
Query: 1 MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI 60
MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI
Sbjct: 52 MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI 111
Query: 61 PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS 120
PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS
Sbjct: 112 PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS 171
Query: 121 RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET 180
RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET
Sbjct: 172 RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET 231
Query: 181 DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC 240
DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC
Sbjct: 232 DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC 291
Query: 241 HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT 300
HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT
Sbjct: 292 HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT 351
Query: 301 KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND 360
KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND
Sbjct: 352 KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND 411
Query: 361 IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC 420
IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC
Sbjct: 412 IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC 471
Query: 421 TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW 480
TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW
Sbjct: 472 TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW 531
Query: 481 SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN 540
SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN
Sbjct: 532 SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN 591
Query: 541 SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL 600
SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL
Sbjct: 592 SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL 651
Query: 601 EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV 660
EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV
Sbjct: 652 EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV 711
Query: 661 LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK 720
LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK
Sbjct: 712 LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK 771
Query: 721 RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG 780
RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG
Sbjct: 772 RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG 831
Query: 781 LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV 840
LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV
Sbjct: 832 LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV 891
Query: 841 EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP 900
EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP
Sbjct: 892 EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP 951
Query: 901 QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV 960
QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV
Sbjct: 952 QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV 1011
Query: 961 VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV 1020
VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV
Sbjct: 1012 VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV 1071
Query: 1021 RAMERTVENIVLPRHEALLFLVF 1043
RAMERTVENIVLPRHEALLFLVF
Sbjct: 1072 RAMERTVENIVLPRHEALLFLVF 1094
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sapiens]
Length = 1043
Score = 2123 bits (5502), Expect = 0.0
Identities = 1043/1043 (100%), Positives = 1043/1043 (100%)
Query: 1 MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI 60
MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI
Sbjct: 1 MRRFKRKHLTAIDCQHLARSHLAVTQPFGQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCI 60
Query: 61 PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS 120
PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS
Sbjct: 61 PEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPS 120
Query: 121 RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET 180
RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET
Sbjct: 121 RKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGET 180
Query: 181 DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC 240
DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC
Sbjct: 181 DQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVC 240
Query: 241 HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT 300
HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT
Sbjct: 241 HLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATT 300
Query: 301 KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND 360
KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND
Sbjct: 301 KCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVND 360
Query: 361 IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC 420
IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC
Sbjct: 361 IQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSC 420
Query: 421 TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW 480
TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW
Sbjct: 421 TQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKW 480
Query: 481 SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN 540
SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN
Sbjct: 481 SQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVN 540
Query: 541 SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL 600
SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL
Sbjct: 541 SVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVL 600
Query: 601 EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV 660
EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV
Sbjct: 601 EASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIV 660
Query: 661 LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK 720
LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK
Sbjct: 661 LSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCK 720
Query: 721 RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG 780
RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG
Sbjct: 721 RVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFG 780
Query: 781 LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV 840
LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV
Sbjct: 781 LDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVV 840
Query: 841 EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP 900
EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP
Sbjct: 841 EKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLP 900
Query: 901 QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV 960
QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV
Sbjct: 901 QLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGV 960
Query: 961 VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV 1020
VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV
Sbjct: 961 VRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQV 1020
Query: 1021 RAMERTVENIVLPRHEALLFLVF 1043
RAMERTVENIVLPRHEALLFLVF
Sbjct: 1021 RAMERTVENIVLPRHEALLFLVF 1043
>gi|8922188 F-box only protein 6 [Homo sapiens]
Length = 293
Score = 40.0 bits (92), Expect = 0.011
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
AL I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 9 ALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LMTLWKR 56
>gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 39.3 bits (90), Expect = 0.020
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
>gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 39.3 bits (90), Expect = 0.020
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
>gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 39.3 bits (90), Expect = 0.020
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
>gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 39.3 bits (90), Expect = 0.020
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 37.7 bits (86), Expect = 0.057
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 214 SLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLYHRYLMNEEQAVSKV 273
SLPSE++ H+F+FLP D S C WRE + P P ++ R E+ ++
Sbjct: 70 SLPSELIVHIFSFLPAPDRL-RASASCSHWRECLFYPALWPQLRICLRVSPAEQ---PRL 125
Query: 274 DGILSNCG 281
+ ++ CG
Sbjct: 126 EFLMRKCG 133
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 37.4 bits (85), Expect = 0.074
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 96 PAESSCALPQEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSR-WDGVSKKAPRHHLSV 154
P +CA+ + G A PGSPG P EE A G + DG +K L
Sbjct: 98 PRGVNCAVCRPGYADPGSPGPQQP-------DEEPRATARGYEKEQDGAPEKCKSSELGP 150
Query: 155 PCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPDPIP 193
PC RL AE GE + + VG P
Sbjct: 151 PC-------------QERLGAEDGEMEMEKRQVGRSGAP 176
>gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens]
Length = 326
Score = 37.4 bits (85), Expect = 0.074
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 209 LSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISD 249
++ + LP VL +F++LPV D +S VCH W+ ++ D
Sbjct: 1 MATLVELPDSVLLEIFSYLPVRDRI-RISRVCHRWKRLVDD 40
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.0 bits (79), Expect = 0.37
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 69 QPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPSRKRSWSSE 128
QP + + G +G +ESS +P++ P SPG P ++ +
Sbjct: 2238 QPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTG 2297
Query: 129 EESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ----EAEDSTSRLSAESGETDQDA 184
S++A S W +K + + TR +A+ AE +R+ ES ++Q+
Sbjct: 2298 PSSSRA---SSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEE 2354
Query: 185 GDVG 188
+G
Sbjct: 2355 APLG 2358
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 34.7 bits (78), Expect = 0.48
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 200 LGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLY 259
L P ++ L LP EV+ +F++L +DL + VC + E+ +DP+ WK+LY
Sbjct: 62 LSAAPAEQYLQE--KLPDEVVLKIFSYLLEQDL-CRAACVCKRFSELANDPIL--WKRLY 116
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 34.7 bits (78), Expect = 0.48
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 200 LGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLY 259
L P ++ L LP EV+ +F++L +DL + VC + E+ +DP+ WK+LY
Sbjct: 62 LSAAPAEQYLQE--KLPDEVVLKIFSYLLEQDL-CRAACVCKRFSELANDPIL--WKRLY 116
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 34.7 bits (78), Expect = 0.48
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 200 LGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLY 259
L P ++ L LP EV+ +F++L +DL + VC + E+ +DP+ WK+LY
Sbjct: 62 LSAAPAEQYLQE--KLPDEVVLKIFSYLLEQDL-CRAACVCKRFSELANDPIL--WKRLY 116
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 34.3 bits (77), Expect = 0.63
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 72 TNDMAKSNSVGQDSCQDSEGDMIFPAESSCA-LPQEGSAGPGSPGSAPPSRKRSWSSEEE 130
T S S QD+ G ++ PA S+ + L E + P S GS E
Sbjct: 61 TTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSM------------E 108
Query: 131 SNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPD 190
+ G++ G+S+K+ H S P A ++S +S ES + G
Sbjct: 109 TTALPGSTTTPGLSEKSTTFHSSP--RSPATTLSPASTTSSGVSEESTTSHSRPGSTHTT 166
Query: 191 PIPDS 195
PDS
Sbjct: 167 AFPDS 171
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 34.3 bits (77), Expect = 0.63
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 103 LPQEGSAGPGSP---GSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLS 153
LP A PG P GSAPP+R R Q G+ R GV+ H L+
Sbjct: 283 LPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALA 336
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 34.3 bits (77), Expect = 0.63
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 103 LPQEGSAGPGSP---GSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLS 153
LP A PG P GSAPP+R R Q G+ R GV+ H L+
Sbjct: 381 LPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALA 434
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 34.3 bits (77), Expect = 0.63
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 103 LPQEGSAGPGSP---GSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLS 153
LP A PG P GSAPP+R R Q G+ R GV+ H L+
Sbjct: 381 LPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALA 434
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 34.3 bits (77), Expect = 0.63
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 72 TNDMAKSNSVGQDSCQDSEGDMIFPAESSCA-LPQEGSAGPGSPGSAPPSRKRSWSSEEE 130
T S S QD+ G ++ PA S+ + L E + P S GS E
Sbjct: 1985 TTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSM------------E 2032
Query: 131 SNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPD 190
+ G++ G+S+K+ H S P A ++S +S ES + G
Sbjct: 2033 TTALPGSTTTPGLSEKSTTFHSSP--RSPATTLSPASTTSSGVSEESTTSHSRPGSTHTT 2090
Query: 191 PIPDS 195
PDS
Sbjct: 2091 AFPDS 2095
Score = 34.3 bits (77), Expect = 0.63
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 72 TNDMAKSNSVGQDSCQDSEGDMIFPAESSCA-LPQEGSAGPGSPGSAPPSRKRSWSSEEE 130
T S S QD+ G ++ PA S+ + L E + P S GS E
Sbjct: 3542 TTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSM------------E 3589
Query: 131 SNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPD 190
+ G++ G+S+K+ H S P A ++S +S ES + G
Sbjct: 3590 TTALPGSTTTPGLSEKSTTFHSSP--RSPATTLSPASTTSSGVSEESTTSHSRPGSTHTT 3647
Query: 191 PIPDS 195
PDS
Sbjct: 3648 AFPDS 3652
Score = 32.7 bits (73), Expect = 1.8
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 72 TNDMAKSNSVGQDSCQDSEGDMIFPAESSCA-LPQEGSAGPGSPGSAPPSRKRSWSSEEE 130
T S S QD+ G ++ PA S+ + L E + P S GS E
Sbjct: 902 TTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSM------------E 949
Query: 131 SNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPD 190
+ G++ G+S+++ H S P A ++S +S ES + G
Sbjct: 950 TTALPGSTTTPGLSERSTTFHSSP--RSPATTLSPASTTSSGVSEESTTSRSRPGSTHTT 1007
Query: 191 PIPDS 195
PDS
Sbjct: 1008 AFPDS 1012
>gi|101943240 general transcription factor IIIC, polypeptide 1, alpha
220kDa [Homo sapiens]
Length = 2109
Score = 34.3 bits (77), Expect = 0.63
Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 35/134 (26%)
Query: 98 ESSCALPQEGSAGPGSP--GSAPPS-------RKRSWSSEEESNQATGTSRW-------- 140
E A P EGS+ SP G APPS R+ SW+SE A GT
Sbjct: 1830 EDPQARPLEGSSSEDSPPEGQAPPSHSPRGTKRRASWASENGETDAEGTQMTPAKRPALQ 1889
Query: 141 -------------DGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAE-----SGETDQ 182
DG +AP ++ T A QE ++ S+ SG+
Sbjct: 1890 DSNLAPSLGPGAEDGAEAQAPSPPPALEDTAAAGAAQEDQEGVGEFSSPGQEQLSGQAQP 1949
Query: 183 DAGDVGPDPIPDSY 196
G P +S+
Sbjct: 1950 PEGSEDPRGFTESF 1963
>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
Length = 445
Score = 34.3 bits (77), Expect = 0.63
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 97 AESSCALPQEGSAGPGSPGSAPPSRKRSWSSEEESNQAT---GTSRWDGVSKKAPRHHLS 153
A +SC+ P+ + SP + SE++S A+ S G+ KK R L
Sbjct: 135 AAASCSPPRSAPSSDSSPSFVRRHPRAEPHSEDDSRDASPPEPASPTIGLDKKTRRKFLD 194
Query: 154 VPCT--RPREARQEAEDSTSRLSAESGETDQDAGDVGPDP-IPDSYY 197
+ T R + E ++RLS S E+ + +G G P +P S++
Sbjct: 195 LGVTLRRASTGKSRKEKGSNRLSMGSRESVEGSGRSGGSPFLPFSWF 241
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 33.9 bits (76), Expect = 0.82
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 72 TNDMAKSNSVGQDSCQDSEGDMIFPAES-SCALPQEGSAGPGSPGSAPPSRKRSWSSEEE 130
T S+ S QD+ G ++ PA S + L E + P S GS E
Sbjct: 823 TTSGRSEESIASHSSQDATGTIVLPARSTNSVLLGESTTSPISSGSM------------E 870
Query: 131 SNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPD 190
+ G++ G+S+++ H S P A ++S +S ES + G
Sbjct: 871 TTALPGSTTTPGLSERSTTFHSSP--RSPATTLSPASTTSSGVSEESTTSHSRPGSTHTT 928
Query: 191 PIPDS 195
PDS
Sbjct: 929 AFPDS 933
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 33.5 bits (75), Expect = 1.1
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 9 LTAIDCQHLARSHLAVTQPFGQR-WTNRDPNHGLYPKPRTKRGSRGQGSQRCIPEFFLAG 67
L+ +D HL + GQ+ T D + L P K + S+ + G
Sbjct: 1202 LSHLDASHLTENLPKAASELGQQPMTELDSSSDLISSPGKKGAAHPDPSKTSVD----TG 1257
Query: 68 KQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPSRKRSWSS 127
+ + ++ S C+ A S LP EGS PG +APP ++ S+
Sbjct: 1258 QVSRPENPSQPASPRVTKCK---------ARSPVRLPHEGSPSPGEKAAAPPDYSKTRSA 1308
Query: 128 EEES 131
E S
Sbjct: 1309 SETS 1312
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 33.5 bits (75), Expect = 1.1
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 34 NRDPNHGLYPKPRTKRGSRGQGSQRC--IPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEG 91
+R P G YP P ++ +G G + IP + G Q S +
Sbjct: 1357 DRRPIQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPL-------------QSSSSEGPQ 1403
Query: 92 DMIFPAESSCALPQEGSAGPGSPGSAP--PSRKRSWSSEEESNQATGTSRWDG-VSKKAP 148
++ A + P + GPG P AP P R+ + S+W VS++ P
Sbjct: 1404 QNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQP 1463
Query: 149 RHHLSV---PCTRPREARQEAEDS 169
S P TRP + + S
Sbjct: 1464 YMSSSASMQPITRPPQPSYQTPPS 1487
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 33.5 bits (75), Expect = 1.1
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 34 NRDPNHGLYPKPRTKRGSRGQGSQRC--IPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEG 91
+R P G YP P ++ +G G + IP + G Q S +
Sbjct: 1397 DRRPIQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPL-------------QSSSSEGPQ 1443
Query: 92 DMIFPAESSCALPQEGSAGPGSPGSAP--PSRKRSWSSEEESNQATGTSRWDG-VSKKAP 148
++ A + P + GPG P AP P R+ + S+W VS++ P
Sbjct: 1444 QNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQP 1503
Query: 149 RHHLSV---PCTRPREARQEAEDS 169
S P TRP + + S
Sbjct: 1504 YMSSSASMQPITRPPQPSYQTPPS 1527
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 33.5 bits (75), Expect = 1.1
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 34 NRDPNHGLYPKPRTKRGSRGQGSQRC--IPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEG 91
+R P G YP P ++ +G G + IP + G Q S +
Sbjct: 1344 DRRPIQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPL-------------QSSSSEGPQ 1390
Query: 92 DMIFPAESSCALPQEGSAGPGSPGSAP--PSRKRSWSSEEESNQATGTSRWDG-VSKKAP 148
++ A + P + GPG P AP P R+ + S+W VS++ P
Sbjct: 1391 QNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQP 1450
Query: 149 RHHLSV---PCTRPREARQEAEDS 169
S P TRP + + S
Sbjct: 1451 YMSSSASMQPITRPPQPSYQTPPS 1474
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 33.1 bits (74), Expect = 1.4
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 29 GQRWTNRDPNHGLYPKPRTKRGSRGQGSQRCIPEFFLAGKQPCTNDMAKSNSVGQDSCQD 88
G W G +P ++ S G GS L G +P D + S Q
Sbjct: 1675 GGFWPGAGDQTGGGSRPGSEDQSSGIGSWGVAGGQVLGGARPGPADQSSGGSWAGTGNQS 1734
Query: 89 SEGDMIFPAESS--CALPQ--EGSAGPGS-PGSAPPSRKRSWSSEEESNQATGTSR 139
S I P + + C+ P+ + + G GS G+ + SW+ N+A G SR
Sbjct: 1735 SGRSWIGPGDQAVDCSKPEFEDQACGGGSWAGAGSQASGESWAGSRPGNEAIGGSR 1790
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 33.1 bits (74), Expect = 1.4
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 27/158 (17%)
Query: 99 SSCALPQEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTR 158
++ A Q G+A G+PG APP + EEE+ A G AP P T+
Sbjct: 527 AAAATGQPGTAPAGTPG-APPLAGMAIVKEEETEAAIG----------APPTATEGPETK 575
Query: 159 P-REARQEAEDSTS-RLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLP 216
P A E + RL++ SG T V P+ + G GTL + +C P
Sbjct: 576 PVLMALAEGPGAEGPRLASPSGSTSSGLEVVAPEG-TSAPGGGPGTLDDSATICRVCQKP 634
Query: 217 SEVLR------------HVFAFLPVEDLYWNLSLVCHL 242
+++ H+ A V W+ SL CH+
Sbjct: 635 GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSL-CHV 671
>gi|37221175 PH domain and leucine rich repeat protein phosphatase
[Homo sapiens]
Length = 1205
Score = 33.1 bits (74), Expect = 1.4
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 33/133 (24%)
Query: 58 RCIPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESS------CALPQEGSAGP 111
R +P+ A K+ CT +A+S C DS ++ + C L G+ P
Sbjct: 878 RNVPDALAAAKKLCT--LAQSYG-----CHDSISAVVVQLSVTEDSFCCCELSAGGAVPP 930
Query: 112 GSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ-EAEDST 170
SPG PPS V K P L VP + A + +E ST
Sbjct: 931 PSPGIFPPSVNM-------------------VIKDRPSDGLGVPSSSSGMASEISSELST 971
Query: 171 SRLSAESGETDQD 183
S +S+E G T D
Sbjct: 972 SEMSSEVGSTASD 984
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 33.1 bits (74), Expect = 1.4
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 99 SSCALPQEGSAGPGSPGSAPPSRKRSWSSEEE--SNQATGTSRWDGVSKKAPRHHLSVPC 156
S+ A P S+G +P APPS R + + + G R +G P P
Sbjct: 662 STLASPSPPSSGHSTPRLAPPSPAREGTDKANHVPKEEAGAPRGEG-----PAIPGDTPP 716
Query: 157 TRPREARQEAEDSTSRLSAESGETDQDAGDVGPDPIPDSYY 197
PR AR E T L+ ++G + G + PDS +
Sbjct: 717 PTPRSAR--LERMTQALALQAGSLEDGGPPRGSEGTPDSLH 755
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,046,764
Number of Sequences: 37866
Number of extensions: 1917754
Number of successful extensions: 6223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 6146
Number of HSP's gapped (non-prelim): 152
length of query: 1043
length of database: 18,247,518
effective HSP length: 112
effective length of query: 931
effective length of database: 14,006,526
effective search space: 13040075706
effective search space used: 13040075706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.