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Search of human proteins with 30581113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo
sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo ... 282 6e-77
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ... 240 3e-64
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ... 240 3e-64
gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ... 240 3e-64
gi|4826730 FK506 binding protein 12-rapamycin associated protein... 31 0.40
gi|17941285 solute carrier family 5 (sodium/glucose cotransporte... 31 0.40
gi|32171205 EF-hand domain family, member A2 [Homo sapiens] 28 3.4
gi|229089137 biorientation of chromosomes in cell division 1 iso... 28 3.4
gi|34147529 biorientation of chromosomes in cell division 1 isof... 28 3.4
gi|194306623 immunoglobulin superfamily containing leucine-rich ... 28 3.4
gi|194306621 immunoglobulin superfamily containing leucine-rich ... 28 3.4
gi|39930401 immunoglobulin superfamily containing leucine-rich r... 28 3.4
gi|194306618 immunoglobulin superfamily containing leucine-rich ... 28 3.4
gi|33413418 signal peptide peptidase 3 [Homo sapiens] 27 4.4
gi|157388943 transmembrane protein 104 [Homo sapiens] 27 4.4
gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens] 27 5.8
gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens] 27 5.8
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens] 27 5.8
gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens] 27 5.8
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 27 5.8
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 27 5.8
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 27 5.8
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 27 5.8
gi|34486092 adenylate cyclase 5 [Homo sapiens] 27 5.8
gi|28316810 coiled-coil domain containing 107 [Homo sapiens] 27 5.8
gi|169171979 PREDICTED: similar to sucrase-isomaltase [Homo sapi... 27 7.6
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi... 27 7.6
gi|116812593 liver-specific organic anion transporter 3TM12 [Hom... 27 7.6
gi|24497487 urate anion exchanger 1 isoform b [Homo sapiens] 26 9.9
gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens] 26 9.9
>gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo
sapiens]
Length = 143
Score = 282 bits (722), Expect = 6e-77
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 IRSEGISLQHLKQLSREPVQGLG 143
IRSEGISLQHLKQLSREPVQGLG
Sbjct: 121 IRSEGISLQHLKQLSREPVQGLG 143
>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
sapiens]
Length = 426
Score = 240 bits (613), Expect = 3e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 I 121
I
Sbjct: 121 I 121
>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
sapiens]
Length = 394
Score = 240 bits (613), Expect = 3e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 I 121
I
Sbjct: 121 I 121
>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
sapiens]
Length = 377
Score = 240 bits (613), Expect = 3e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 I 121
I
Sbjct: 121 I 121
>gi|4826730 FK506 binding protein 12-rapamycin associated protein 1
[Homo sapiens]
Length = 2549
Score = 30.8 bits (68), Expect = 0.40
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 3 SALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKN 62
+A ++ N +EA NS T P + + LLM +P G RS+ +RG N
Sbjct: 1841 TASTEGSNSESEAESTENSPT-PSPLQKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNN 1899
Query: 63 ASDMPETIT 71
D +T
Sbjct: 1900 LQDTLRVLT 1908
>gi|17941285 solute carrier family 5 (sodium/glucose cotransporter),
member 11 [Homo sapiens]
Length = 675
Score = 30.8 bits (68), Expect = 0.40
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 38 SLLLMA--LLPIFFGALRSVRCARGKNASDMPETITSR-DAARFPIIASCTLLGLYLFFK 94
S+L++A LPI+ + MPE + R R PII + L +Y+F K
Sbjct: 108 SVLMLAWIFLPIYIAG----------QVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTK 157
Query: 95 IFSQEYI-------NLLLSMYFFVLGILALS 118
I Y +L L +Y ++G+LA++
Sbjct: 158 ISVDMYAGAIFIQQSLHLDLYLAIVGLLAIT 188
>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 3.4
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 7 DPHNGSAEAGGPTNS-TTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKNASD 65
DP GS G P+ S T P P G +LPI A + + D
Sbjct: 88 DPRAGSPATGRPSKSAATEPEDPPRG----------RGMLPIPVAAAKETVAIGRTDIED 137
Query: 66 MPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTIRS-- 123
+ TSR+ RF + AS G L ++ Y F+L + +
Sbjct: 138 LDLYATSRE-RRFRLFASIECEG-------------QLFMTPYDFILAVTTDEPKVAKTW 183
Query: 124 EGISLQHLKQLSRE 137
+ +S Q L Q+ E
Sbjct: 184 KSLSKQELNQMLAE 197
>gi|229089137 biorientation of chromosomes in cell division 1
isoform b [Homo sapiens]
Length = 129
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 11 GSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIF 48
G++ GGP N + PP P+ IAL L L F
Sbjct: 31 GASGGGGPINPASLPPGDPQLIALIVEQLKSRGLFDSF 68
>gi|34147529 biorientation of chromosomes in cell division 1
isoform a [Homo sapiens]
Length = 185
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 11 GSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIF 48
G++ GGP N + PP P+ IAL L L F
Sbjct: 31 GASGGGGPINPASLPPGDPQLIALIVEQLKSRGLFDSF 68
>gi|194306623 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 13 AEAGGPTNSTTRPPSTPEGIALAYGSLLLMAL 44
A+ P + PP+TP +ALA GSLL+ L
Sbjct: 314 AQTPTPAPAWPAPPATPRFLALANGSLLVPLL 345
>gi|194306621 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 13 AEAGGPTNSTTRPPSTPEGIALAYGSLLLMAL 44
A+ P + PP+TP +ALA GSLL+ L
Sbjct: 314 AQTPTPAPAWPAPPATPRFLALANGSLLVPLL 345
>gi|39930401 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 13 AEAGGPTNSTTRPPSTPEGIALAYGSLLLMAL 44
A+ P + PP+TP +ALA GSLL+ L
Sbjct: 314 AQTPTPAPAWPAPPATPRFLALANGSLLVPLL 345
>gi|194306618 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 13 AEAGGPTNSTTRPPSTPEGIALAYGSLLLMAL 44
A+ P + PP+TP +ALA GSLL+ L
Sbjct: 314 AQTPTPAPAWPAPPATPRFLALANGSLLVPLL 345
>gi|33413418 signal peptide peptidase 3 [Homo sapiens]
Length = 384
Score = 27.3 bits (59), Expect = 4.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 38 SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80
S L+++L I +G+ RS+ G + ++ +TI S A PI
Sbjct: 19 STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78
Query: 81 IASCTLLGLYLFF 93
AS +LL ++ FF
Sbjct: 79 GASVSLLVMFFFF 91
>gi|157388943 transmembrane protein 104 [Homo sapiens]
Length = 496
Score = 27.3 bits (59), Expect = 4.4
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 32 IALAYGSLLLMALLPIFFGALRSVRCARGKNAS-----DMPETITSR--------DAARF 78
I YG L + A F +L V C+ N S D T R DA R
Sbjct: 153 IVYLYGDLAIYAAAVPF--SLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRI 210
Query: 79 PIIASCTLLGLYLFFKIFSQEYINLLLSMY----FFVLGILALSHTIRSEG 125
+ LLG + FF + +Y+ +L S+ F V+ +LAL +G
Sbjct: 211 YLAIFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAVMIVLALIRIGHGQG 261
>gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]
Length = 361
Score = 26.9 bits (58), Expect = 5.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 6 SDPHNGSAEAGGP--TNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGK 61
SD H+ ++ GG T+ R P PE + + L L +L + RC + K
Sbjct: 242 SDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKK 299
>gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens]
Length = 493
Score = 26.9 bits (58), Expect = 5.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 6 SDPHNGSAEAGGP--TNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGK 61
SD H+ ++ GG T+ R P PE + + L L +L + RC + K
Sbjct: 374 SDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKK 431
>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
Length = 699
Score = 26.9 bits (58), Expect = 5.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 6 SDPHNGSAEAGGP--TNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGK 61
SD H+ ++ GG T+ R P PE + + L L +L + RC + K
Sbjct: 580 SDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKK 637
>gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]
Length = 742
Score = 26.9 bits (58), Expect = 5.8
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 6 SDPHNGSAEAGGP--TNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGK 61
SD H+ ++ GG T+ R P PE + + L L +L + RC + K
Sbjct: 623 SDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKK 680
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 18 PTNSTTRPPSTPEGIALAYGSLLLMALLPIFF-----GALRSVRCARGKNA 63
P T PP +P G A + G L L +L P FF G L S+ + G A
Sbjct: 664 PEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLGARA 714
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 18 PTNSTTRPPSTPEGIALAYGSLLLMALLPIFF-----GALRSVRCARGKNA 63
P T PP +P G A + G L L +L P FF G L S+ + G A
Sbjct: 664 PEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLGARA 714
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 18 PTNSTTRPPSTPEGIALAYGSLLLMALLPIFF-----GALRSVRCARGKNA 63
P T PP +P G A + G L L +L P FF G L S+ + G A
Sbjct: 664 PEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLGARA 714
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 26.9 bits (58), Expect = 5.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 18 PTNSTTRPPSTPEGIALAYGSLLLMALLPIFF-----GALRSVRCARGKNA 63
P T PP +P G A + G L L +L P FF G L S+ + G A
Sbjct: 670 PEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVLSSLLGSLGARA 720
>gi|34486092 adenylate cyclase 5 [Homo sapiens]
Length = 1261
Score = 26.9 bits (58), Expect = 5.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 85 TLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTIRSEGISLQHLKQ 133
TL+G++ +F ++N+ +LG LA H I + ++ H+ +
Sbjct: 835 TLVGVFTITLVFLAAFVNMFTCNSRDLLGCLAQEHNISASQVNACHVAE 883
>gi|28316810 coiled-coil domain containing 107 [Homo sapiens]
Length = 283
Score = 26.9 bits (58), Expect = 5.8
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 8 PHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKN 62
P N + G T RPP + GSL L AL A +C +GK+
Sbjct: 35 PGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKD 89
>gi|169171979 PREDICTED: similar to sucrase-isomaltase [Homo
sapiens]
Length = 1492
Score = 26.6 bits (57), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 7 DPHNGSAEAGGPTNSTTRPPSTPEG 31
DP+N E P N + P STPEG
Sbjct: 691 DPNNNRYEVPVPLNIPSVPSSTPEG 715
>gi|157074214 potassium channel, subfamily U, member 1 [Homo
sapiens]
Length = 1149
Score = 26.6 bits (57), Expect = 7.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 95 IFSQEYINLLLSMYFFVLGILALSHTIRSEGISLQHLKQLSREPVQGL 142
+FS +++ LL+ F+ +L L + + G+S Q + L ++ V G+
Sbjct: 900 VFSGSFLDSLLATAFYNYHVLELLQMLVTGGVSSQLEQHLDKDKVYGV 947
>gi|116812593 liver-specific organic anion transporter 3TM12 [Homo
sapiens]
Length = 640
Score = 26.6 bits (57), Expect = 7.6
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 30 EGIALAYGSLLLMAL----LPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCT 85
+ +A+ + S+++ +L +PI+FGAL C + S +R A R I + T
Sbjct: 521 KALAIGFHSMIMRSLGGILVPIYFGALIDTTCMKWSTNS-----CGARGACR---IYNST 572
Query: 86 LLGLYLF-FKIFSQEYINLLLSMYFFVL 112
LG F K+ + +LL+++ FV+
Sbjct: 573 YLGRAFFGLKVALIFPVLVLLTVFIFVV 600
>gi|24497487 urate anion exchanger 1 isoform b [Homo sapiens]
Length = 332
Score = 26.2 bits (56), Expect = 9.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 24 RPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKNASDMPET-ITSRDAARFPIIA 82
R P+ + LA +L L+P GALRS G T IT + FP +
Sbjct: 184 RRPTLAASLLLAGLCILANTLVPHEMGALRSALAVLGLGGVGAAFTCITIYSSELFPTVL 243
Query: 83 SCTLLGL 89
T +GL
Sbjct: 244 RMTAVGL 250
>gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens]
Length = 553
Score = 26.2 bits (56), Expect = 9.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 24 RPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKNASDMPET-ITSRDAARFPIIA 82
R P+ + LA +L L+P GALRS G T IT + FP +
Sbjct: 405 RRPTLAASLLLAGLCILANTLVPHEMGALRSALAVLGLGGVGAAFTCITIYSSELFPTVL 464
Query: 83 SCTLLGL 89
T +GL
Sbjct: 465 RMTAVGL 471
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,302,897
Number of Sequences: 37866
Number of extensions: 200730
Number of successful extensions: 859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 36
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.