Guide to the Human Genome
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Name: BOD1 Sequence: fasta or formatted (185aa) NCBI GI: 34147529
Description:

biorientation of chromosomes in cell division 1 isoform a

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [129aa] biorientation of chromosomes in cell division 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         20           2
 C cysteine            0.5          1           1
 D aspartate           6.5         12           1
 E glutamate           3.8          7           1
 F phenylalanine       2.7          5           1
 G glycine            13.0         24           6
 H histidine           1.6          3           1
 I isoleucine          4.3          8           2
 K lysine              4.3          8           2
 L leucine             7.0         13           1
 M methionine          1.6          3           1
 N asparagine          4.3          8           1
 P proline             9.2         17           3
 Q glutamine           7.6         14           1
 R arginine            4.9          9           2
 S serine              6.5         12           1
 T threonine           4.3          8           1
 V valine              5.9         11           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   biorientation of chromosomes in cell division 1 isof... 
BOD1                  0.635   biorientation of chromosomes in cell division 1 iso...
BOD1L                 0.479   biorientation of chromosomes in cell division 1-like...
KRT1                  0.054   keratin 1 
GSK3A                 0.054   glycogen synthase kinase 3 alpha 
SHOX2                 0.051   short stature homeobox 2 isoform a 
RING1                 0.051   ring finger protein 1 
POU4F2                0.048   Brn3b POU domain transcription factor 
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
FAM98B                0.048   family with sequence similarity 98, member B isofor...
MAF                   0.046   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.046   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
SIX3                  0.046   sine oculis homeobox homolog 3 
POU3F2                0.043   POU domain, class 3, transcription factor 2 
TRIO                  0.043   triple functional domain (PTPRF interacting) 
LRCH2                 0.043   leucine-rich repeats and calponin homology (CH) dom...
CAPNS1                0.043   calpain, small subunit 1 
CAPNS1                0.043   calpain, small subunit 1 
YEATS2                0.043   YEATS domain containing 2 
NEURL4                0.040   neuralized homolog 4 isoform 1 
NEURL4                0.040   neuralized homolog 4 isoform 2 
ZSWIM6                0.040   zinc finger, SWIM-type containing 6 
FZD8                  0.040   frizzled 8 
LOR                   0.040   loricrin 
CADPS                 0.040   Ca2+-dependent secretion activator isoform 2 
CADPS                 0.040   Ca2+-dependent secretion activator isoform 1 
CADPS                 0.040   Ca2+-dependent secretion activator isoform 3 
KRT9                  0.037   keratin 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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