Guide to the Human Genome
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Name: OSTbeta Sequence: fasta or formatted (128aa) NCBI GI: 30578420
Description:

organic solute transporter beta

Referenced in:

Stomach, Small Intestine, and Colon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          9           2
 C cysteine            0.0          0           0
 D aspartate           4.7          6           1
 E glutamate          14.1         18           2
 F phenylalanine       2.3          3           2
 G glycine             3.1          4           1
 H histidine           3.1          4           1
 I isoleucine          3.1          4           2
 K lysine              3.9          5           1
 L leucine            14.1         18           2
 M methionine          3.1          4           1
 N asparagine          3.9          5           2
 P proline             7.8         10           2
 Q glutamine           3.1          4           1
 R arginine            3.9          5           1
 S serine              7.8         10           1
 T threonine           3.9          5           1
 V valine              9.4         12           3
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   organic solute transporter beta 
LOC441476             0.031   hypothetical protein LOC441476 
HAUS2                 0.022   centrosomal protein 27kDa isoform 2 
NES                   0.022   nestin 
HYOU1                 0.022   hypoxia up-regulated 1 precursor 
HYOU1                 0.022   hypoxia up-regulated 1 precursor 
ZNF135                0.022   zinc finger protein 135 
TKTL1                 0.017   transketolase-like 1 isoform c 
TKTL1                 0.017   transketolase-like 1 isoform b 
TKTL1                 0.017   transketolase-like 1 isoform a 
SCYL3                 0.017   SCY1-like 3 isoform 2 
SCYL3                 0.017   SCY1-like 3 isoform 1 
SEZ6L                 0.017   seizure related 6 homolog (mouse)-like precursor [Ho...
OTOF                  0.013   otoferlin isoform c 
OTOF                  0.013   otoferlin isoform b 
OTOF                  0.013   otoferlin isoform d 
OTOF                  0.013   otoferlin isoform a 
CTDSPL2               0.013   CTD (carboxy-terminal domain, RNA polymerase II, po...
PRR12                 0.013   proline rich 12 
CD47                  0.009   CD47 antigen isoform 3 precursor 
CD47                  0.009   CD47 antigen isoform 1 precursor 
KIAA2018              0.009   hypothetical protein LOC205717 
NALCN                 0.009   voltage gated channel like 1 
RAB3GAP2              0.009   rab3 GTPase-activating protein, non-catalytic subuni...
LRRC23                0.009   leucine rich repeat containing 23 isoform a 
LRRC23                0.009   leucine rich repeat containing 23 isoform b 
LRRC23                0.009   leucine rich repeat containing 23 isoform a 
C14orf49              0.009   nesprin-3 
GPR98                 0.004   G protein-coupled receptor 98 precursor 
NMI                   0.004   N-myc and STAT interactor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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