Guide to the Human Genome
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Name: CD47 Sequence: fasta or formatted (323aa) NCBI GI: 4502673
Description:

CD47 antigen isoform 1 precursor

Referenced in:

Integrins
Hematopoiesis and Erythrocytes
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [305aa] CD47 antigen isoform 2 precursor
alt prot [312aa] CD47 antigen isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         25           2
 C cysteine            2.2          7           2
 D aspartate           2.8          9           1
 E glutamate           5.0         16           2
 F phenylalanine       5.3         17           1
 G glycine             7.1         23           2
 H histidine           0.9          3           1
 I isoleucine          9.3         30           2
 K lysine              6.2         20           1
 L leucine            12.4         40           3
 M methionine          2.5          8           2
 N asparagine          3.7         12           1
 P proline             3.4         11           2
 Q glutamine           2.5          8           1
 R arginine            1.5          5           1
 S serine              6.8         22           2
 T threonine           7.1         23           2
 V valine              9.3         30           2
 W tryptophan          1.2          4           1
 Y tyrosine            3.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD47 antigen isoform 1 precursor 
CD47                  0.961   CD47 antigen isoform 3 precursor 
CD47                  0.934   CD47 antigen isoform 2 precursor 
PSEN1                 0.028   presenilin 1 isoform I-467 
PSEN1                 0.028   presenilin 1 isoform I-463 
OR2AT4                0.020   olfactory receptor, family 2, subfamily AT, member 4...
OR11A1                0.018   olfactory receptor, family 11, subfamily A, member 1 ...
PSEN2                 0.018   presenilin 2 isoform 2 
PSEN2                 0.018   presenilin 2 isoform 1 
VSIG4                 0.016   V-set and immunoglobulin domain containing 4 isofor...
VSIG4                 0.016   V-set and immunoglobulin domain containing 4 isoform ...
OR1G1                 0.016   olfactory receptor, family 1, subfamily G, member 1 ...
OR1F1                 0.016   olfactory receptor, family 1, subfamily F, member 1 [...
OR14C36               0.013   olfactory receptor, family 14, subfamily C, member 3...
OR10C1                0.013   olfactory receptor, family 10, subfamily C, member 1...
LOC100289996          0.012   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.012   PREDICTED: hypothetical protein XP_002343076 
G6PC3                 0.012   glucose-6-phosphatase catalytic subunit 3 
OR6S1                 0.012   olfactory receptor, family 6, subfamily S, member 1 ...
OR1D5                 0.012   olfactory receptor, family 1, subfamily D, member 5 [...
TMEM64                0.010   transmembrane protein 64 isoform 2 
TMEM64                0.010   transmembrane protein 64 isoform 1 
OR7A10                0.010   olfactory receptor, family 7, subfamily A, member 10...
OR1D4                 0.010   olfactory receptor, family 1, subfamily D, member 4...
OR6C6                 0.010   olfactory receptor, family 6, subfamily C, member 6 ...
SLC46A3               0.008   solute carrier family 46, member 3 isoform a 
SLC46A3               0.008   solute carrier family 46, member 3 isoform b 
OR1E1                 0.008   olfactory receptor, family 1, subfamily E, member 1...
OR6F1                 0.008   olfactory receptor, family 6, subfamily F, member 1 ...
OR4F4                 0.008   olfactory receptor, family 4, subfamily F, member 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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