Guide to the Human Genome
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Name: TKTL1 Sequence: fasta or formatted (540aa) NCBI GI: 225637463
Description:

transketolase-like 1 isoform c

Referenced in:

Pentose Phosphate Pathway

Other entries for this name:
alt prot [596aa] transketolase-like 1 isoform a
alt prot [590aa] transketolase-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         58           3
 C cysteine            2.6         14           1
 D aspartate           6.1         33           2
 E glutamate           5.7         31           2
 F phenylalanine       4.6         25           2
 G glycine             6.9         37           2
 H histidine           2.0         11           1
 I isoleucine          7.4         40           2
 K lysine              4.1         22           1
 L leucine             5.9         32           2
 M methionine          3.0         16           1
 N asparagine          3.0         16           2
 P proline             4.1         22           2
 Q glutamine           3.1         17           1
 R arginine            5.7         31           2
 S serine              7.0         38           2
 T threonine           5.4         29           2
 V valine              8.3         45           3
 W tryptophan          0.9          5           1
 Y tyrosine            3.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transketolase-like 1 isoform c 
TKTL1                 1.000   transketolase-like 1 isoform b 
TKTL1                 1.000   transketolase-like 1 isoform a 
TKTL2                 0.768   transketolase-like 2 
TKT                   0.625   transketolase isoform 1 
TKT                   0.625   transketolase isoform 1 
TKT                   0.570   transketolase isoform 2 
PDHB                  0.033   pyruvate dehydrogenase (lipoamide) beta 
BCKDHB                0.017   branched chain keto acid dehydrogenase E1 beta precur...
BCKDHB                0.017   branched chain keto acid dehydrogenase E1 beta precu...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isofo...
ZRANB3                0.005   zinc finger, RAN-binding domain containing 3 
BAT3                  0.005   HLA-B associated transcript-3 isoform b 
BAT3                  0.005   HLA-B associated transcript-3 isoform b 
BAT3                  0.005   HLA-B associated transcript-3 isoform b 
BAT3                  0.005   HLA-B associated transcript-3 isoform a 
OSTbeta               0.004   organic solute transporter beta 
ZBTB11                0.004   zinc finger protein ZNF-U69274 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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