Guide to the Human Genome
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Name: TKTL1 Sequence: fasta or formatted (596aa) NCBI GI: 225637459
Description:

transketolase-like 1 isoform a

Referenced in:

Pentose Phosphate Pathway

Other entries for this name:
alt prot [590aa] transketolase-like 1 isoform b
alt prot [540aa] transketolase-like 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         65           3
 C cysteine            2.7         16           1
 D aspartate           6.0         36           2
 E glutamate           6.0         36           2
 F phenylalanine       4.4         26           2
 G glycine             6.5         39           2
 H histidine           2.2         13           1
 I isoleucine          7.2         43           2
 K lysine              3.7         22           1
 L leucine             5.9         35           2
 M methionine          3.0         18           1
 N asparagine          2.7         16           2
 P proline             4.2         25           2
 Q glutamine           3.2         19           1
 R arginine            6.2         37           2
 S serine              8.1         48           4
 T threonine           5.5         33           2
 V valine              7.7         46           3
 W tryptophan          0.8          5           1
 Y tyrosine            3.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transketolase-like 1 isoform a 
TKTL1                 0.982   transketolase-like 1 isoform b 
TKTL1                 0.907   transketolase-like 1 isoform c 
TKTL2                 0.744   transketolase-like 2 
TKT                   0.610   transketolase isoform 1 
TKT                   0.610   transketolase isoform 1 
TKT                   0.549   transketolase isoform 2 
PDHB                  0.030   pyruvate dehydrogenase (lipoamide) beta 
BCKDHB                0.015   branched chain keto acid dehydrogenase E1 beta precur...
BCKDHB                0.015   branched chain keto acid dehydrogenase E1 beta precu...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isofo...
ZRANB3                0.004   zinc finger, RAN-binding domain containing 3 
BAT3                  0.004   HLA-B associated transcript-3 isoform b 
BAT3                  0.004   HLA-B associated transcript-3 isoform b 
BAT3                  0.004   HLA-B associated transcript-3 isoform b 
BAT3                  0.004   HLA-B associated transcript-3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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