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Search of human proteins with 30520320
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30520320 ring finger protein 166 [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30520320 ring finger protein 166 [Homo sapiens] 504 e-143
gi|8923898 zinc finger protein 313 [Homo sapiens] 214 4e-56
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 139 3e-33
gi|37595555 ring finger protein 125 [Homo sapiens] 124 9e-29
gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens] 89 4e-18
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 62 3e-10
gi|46852178 potassium channel modulatory factor 1 [Homo sapiens] 62 4e-10
gi|4557841 recombination activating gene 1 [Homo sapiens] 57 1e-08
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 57 1e-08
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 57 1e-08
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 57 1e-08
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 52 3e-07
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 52 3e-07
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 52 3e-07
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 52 3e-07
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 52 3e-07
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 51 8e-07
gi|15208660 tripartite motif protein 21 [Homo sapiens] 50 1e-06
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 50 1e-06
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 50 1e-06
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 50 1e-06
gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens] 50 2e-06
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 50 2e-06
gi|37622899 ring finger protein 137 [Homo sapiens] 50 2e-06
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 47 1e-05
gi|239048909 checkpoint with forkhead and ring finger domains is... 47 1e-05
gi|239048905 checkpoint with forkhead and ring finger domains is... 47 1e-05
gi|239048862 checkpoint with forkhead and ring finger domains is... 47 1e-05
gi|239048792 checkpoint with forkhead and ring finger domains is... 47 1e-05
gi|239048907 checkpoint with forkhead and ring finger domains is... 47 1e-05
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 504 bits (1298), Expect = e-143
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP 60
MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP
Sbjct: 1 MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQP 60
Query: 61 CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV 120
CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV
Sbjct: 61 CLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKV 120
Query: 121 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV 180
QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV
Sbjct: 121 QEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRV 180
Query: 181 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN 237
VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN
Sbjct: 181 VCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN 237
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 214 bits (546), Expect = 4e-56
Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 18 AGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AGPA L ++TCP+CLEVY +PV + CGH FC CLQ CL+ P+C +CR
Sbjct: 15 AGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLKPKKPVCGVCRSALA 72
Query: 78 PKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTS 137
P +A +E+Q+ S + C GC K L+K+R H+++C K Q + K + +
Sbjct: 73 PGV--RAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVK--ATIKDA 128
Query: 138 QPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKS 197
P N+PNR TF CPYC +N DQ+ LV+HC H +D VVCPIC++MPWGDP+Y+S
Sbjct: 129 SLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRS 188
Query: 198 ANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
ANF +H+ RH+FSYDTFVDY +DEE L S+
Sbjct: 189 ANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSI 225
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 139 bits (349), Expect = 3e-33
Identities = 77/234 (32%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 28 EAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKK---VDKA 84
E + CP+C EV PV +C H FC +C ++ CPLCR ++ ++A
Sbjct: 13 EDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERA 72
Query: 85 THVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNI 144
+E + + CR C K++ +MR H SC K Q++ +P SQ N
Sbjct: 73 LDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYG-VSSIIPNFQISQDSVGN- 130
Query: 145 PNRS---------------------TFACPYCGARNLDQQELVKHCVESHRSDPNRVVCP 183
NRS TF CP C N +Q L+ HC +H V CP
Sbjct: 131 SNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCP 190
Query: 184 ICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN 237
IC ++PWGDPS + NF+ HL RH+F Y FV+ +DEE +Q A+ S N
Sbjct: 191 ICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVN 244
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 124 bits (310), Expect = 9e-29
Identities = 70/206 (33%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 31 YTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQ 90
+ C +CLEV H+PV CGH FC C+ L+ CP CR + P + AT V K+
Sbjct: 35 FDCAVCLEVLHQPVRT-RCGHVFCRSCIATSLKNNKWTCPYCRA-YLPSEGVPATDVAKR 92
Query: 91 LSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTF 150
+ S C C+ V L++MR HI +C K ++ P+ +
Sbjct: 93 MKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYG-------------PLQELEETAARC 139
Query: 151 ACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKF 210
CP+C R L + L+ HC+ HRS+ V CP+C +P +PS S + ++HL H
Sbjct: 140 VCPFC-QRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTL 198
Query: 211 SYDTFVDYSIDEEAAFQAALALSLSE 236
YD F+D++I EEA + L SL E
Sbjct: 199 FYDDFIDFNIIEEALIRRVLDRSLLE 224
>gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens]
Length = 151
Score = 88.6 bits (218), Expect = 4e-18
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 149 TFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRH 208
TF CP C N +Q L+ HC +H V CPIC ++PWGDPS + NF+ HL RH
Sbjct: 62 TFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRH 121
Query: 209 KFSYDTFVDYSIDEEAAFQAALALSLSEN 237
+F Y FV+ +DEE +Q A+ S N
Sbjct: 122 QFDYGEFVNLQLDEETQYQTAVEESFQVN 150
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 62.4 bits (150), Expect = 3e-10
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 33 CPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQLS 92
CP+C + PV + +CGH FC CLQ L CP +LP D K+ +E Q+
Sbjct: 18 CPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVL 77
Query: 93 SYKAPC----RGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPN-- 146
C GC L ++ H+++C + CP P+ + + +P+++ +
Sbjct: 78 GLPIRCIHSEEGCRWSGPLRHLQGHLNTC---SFNVIPCPNRCPMKLSRRDLPAHLQHDC 134
Query: 147 -RSTFACPYCG 156
+ C +CG
Sbjct: 135 PKRRLKCEFCG 145
>gi|46852178 potassium channel modulatory factor 1 [Homo sapiens]
Length = 381
Score = 62.0 bits (149), Expect = 4e-10
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 143 NIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQ 202
++ +F CPYCG + L +H H V+CPIC+A+P GDP++ + +F
Sbjct: 71 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130
Query: 203 HLLHRHKFSYD 213
HL H+ D
Sbjct: 131 HLTLEHRAPRD 141
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 57.4 bits (137), Expect = 1e-08
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 32 TCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQL 91
+C IC + PV +C H FC C+ CL+V CP CR P P D + V+ L
Sbjct: 292 SCQICEHILADPVET-NCKHVFCRVCILRCLKVMGSYCPSCRYPCFP--TDLESPVKSFL 348
Query: 92 S-----SYKAPCRGCNKKVTLAKMRVHISS 116
S K P + CN++V+L K HISS
Sbjct: 349 SVLNSLMVKCPAKECNEEVSLEKYNHHISS 378
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 57.0 bits (136), Expect = 1e-08
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS-PLCPLCRLPFDPKKVDKAT 85
LE +Y C C V H P G CGH FC C+ ++ + P+CP+ + ++V K
Sbjct: 39 LEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDN 97
Query: 86 HVEKQLSSYKAPCR---GCNKKVTLAKMRVHISSCLKVQEQMAN 126
++++ + C GCN KV L + + H+ CL Q +N
Sbjct: 98 CCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSN 141
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 57.0 bits (136), Expect = 1e-08
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS-PLCPLCRLPFDPKKVDKAT 85
LE +Y C C V H P G CGH FC C+ ++ + P+CP+ + ++V K
Sbjct: 39 LEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDN 97
Query: 86 HVEKQLSSYKAPCR---GCNKKVTLAKMRVHISSCLKVQEQMAN 126
++++ + C GCN KV L + + H+ CL Q +N
Sbjct: 98 CCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSN 141
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 57.0 bits (136), Expect = 1e-08
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS-PLCPLCRLPFDPKKVDKAT 85
LE +Y C C V H P G CGH FC C+ ++ + P+CP+ + ++V K
Sbjct: 39 LEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDN 97
Query: 86 HVEKQLSSYKAPCR---GCNKKVTLAKMRVHISSCLKVQEQMAN 126
++++ + C GCN KV L + + H+ CL Q +N
Sbjct: 98 CCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSN 141
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 52.4 bits (124), Expect = 3e-07
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECL-----QPCLQVPSPLCPLCRLPFDPKKV 81
++ + TCPICLE+ +P+++ CGH+FC CL + L CP+CR+ + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 67
Query: 82 DKATHV 87
HV
Sbjct: 68 RPNRHV 73
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 52.4 bits (124), Expect = 3e-07
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECL-----QPCLQVPSPLCPLCRLPFDPKKV 81
++ + TCPICLE+ +P+++ CGH+FC CL + L CP+CR+ + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 67
Query: 82 DKATHV 87
HV
Sbjct: 68 RPNRHV 73
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 52.4 bits (124), Expect = 3e-07
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECL-----QPCLQVPSPLCPLCRLPFDPKKV 81
++ + TCPICLE+ +P+++ CGH+FC CL + L CP+CR+ + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 67
Query: 82 DKATHV 87
HV
Sbjct: 68 RPNRHV 73
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVP------SPLCPLCRL 74
A + L + CPIC PV I CGH FC CL ++P SP CPLC+
Sbjct: 4 AASVTSLADEVNCPICQGTLREPVTI-DCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
Query: 75 PFDP 78
PF P
Sbjct: 63 PFRP 66
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVP------SPLCPLCRL 74
A + L + CPIC PV I CGH FC CL ++P SP CPLC+
Sbjct: 4 AASVTSLADEVNCPICQGTLREPVTI-DCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
Query: 75 PFDP 78
PF P
Sbjct: 63 PFRP 66
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 51.2 bits (121), Expect = 8e-07
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPF 76
LE + TC ICL +Y PV + CGH FCG C++ CP CR PF
Sbjct: 6 LEEKLTCAICLGLYQDPVTL-PCGHNFCGACIRDWWDRCGKACPECREPF 54
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 30 QYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPF 76
+ TCPICL+ + PV+I CGH+FC EC+ + +CP+CR F
Sbjct: 13 EVTCPICLDPFVEPVSI-ECGHSFCQECISQVGKGGGSVCPVCRQRF 58
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo
sapiens]
Length = 511
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 16 PPAGPAGGDSGL------EAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS--- 66
P GP G L + + TC ICLE++ PV++ CGH+FC C+ C + P
Sbjct: 6 PRTGPGTGAEALALAAELQGEATCSICLELFREPVSV-ECGHSFCRACIGRCWERPGAGS 64
Query: 67 ----------PL-CPLCRLPFDPKKV 81
PL CP CR P P ++
Sbjct: 65 VGAATRAPPFPLPCPQCREPARPSQL 90
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo
sapiens]
Length = 221
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 16 PPAGPAGGDSGL------EAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS--- 66
P GP G L + + TC ICLE++ PV++ CGH+FC C+ C + P
Sbjct: 6 PRTGPGTGAEALALAAELQGEATCSICLELFREPVSV-ECGHSFCRACIGRCWERPGAGS 64
Query: 67 ----------PL-CPLCRLPFDPKKV 81
PL CP CR P P ++
Sbjct: 65 VGAATRAPPFPLPCPQCREPARPSQL 90
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 27 LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS--PLCPLCRLPFDPKKV 81
LE + TC ICL+ PV I CGH FC C + P+CPLC+ PF + +
Sbjct: 10 LEEEVTCSICLDYLRDPVTI-DCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENI 65
>gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens]
Length = 358
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 15 QPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPL------ 68
+P G A LE Q CPICLE++ +PV I C H C +C Q +PL
Sbjct: 8 KPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGS 67
Query: 69 ----------CPLCR 73
CP CR
Sbjct: 68 TTVSSGGRFRCPSCR 82
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 15 QPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPL------ 68
+P G A LE Q CPICLE++ +PV I C H C +C Q +PL
Sbjct: 8 KPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGS 67
Query: 69 ----------CPLCR 73
CP CR
Sbjct: 68 TTVSSGGRFRCPSCR 82
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 49.7 bits (117), Expect = 2e-06
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 30 QYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSP------LCPLCRLPFDPKKV 81
+ CPIC+ P++I CGH+FC CL ++P CPLCR P P+ +
Sbjct: 13 EVACPICMTFLREPMSI-DCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRAPVQPRNL 69
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 47.4 bits (111), Expect = 1e-05
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 29 AQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCR 73
+ + C +C+ ++ PV CGH+FC CL+ CL +P CPLC+
Sbjct: 475 SDFECSLCMRLFFEPVTT-PCGHSFCKNCLERCLD-HAPYCPLCK 517
Score = 34.3 bits (77), Expect = 0.097
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 16 PPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCR 73
P AG GG GL C C PV + CGH++C CL+ L+ C LCR
Sbjct: 109 PVAGADGGAGGL---LRCLGCRGFLSEPVTV-PCGHSYCRRCLRRELRA---RCRLCR 159
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 200 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 255
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 280 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 335
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 292 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 347
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 292 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 347
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 251 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,484,212
Number of Sequences: 37866
Number of extensions: 523678
Number of successful extensions: 2617
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 2284
Number of HSP's gapped (non-prelim): 522
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.