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Search of human proteins with 30425386
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425386 hypothetical protein LOC128826 [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425386 hypothetical protein LOC128826 [Homo sapiens] 248 1e-66
gi|4502737 cyclin-dependent kinase 5, regulatory subunit 1 [Homo... 34 0.028
gi|171543850 RUN domain containing 1 [Homo sapiens] 32 0.11
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 30 0.53
gi|55741677 SET domain containing 1A [Homo sapiens] 29 0.70
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 28 1.2
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 28 1.2
gi|171543895 ataxin 2 [Homo sapiens] 28 2.0
gi|91208420 bassoon protein [Homo sapiens] 28 2.0
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 28 2.0
gi|34577114 cytomatrix protein p110 [Homo sapiens] 28 2.0
gi|13376064 zinc finger protein 408 [Homo sapiens] 28 2.0
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 27 2.6
gi|47078281 hypothetical protein LOC9679 [Homo sapiens] 27 3.5
gi|166295179 ELG protein isoform a [Homo sapiens] 27 3.5
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 27 3.5
gi|169166645 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239751337 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|113416055 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|113415539 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239740950 PREDICTED: similar to mitogen-activated protein kin... 27 4.5
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 26 5.9
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 26 5.9
gi|153070260 myristoylated alanine-rich protein kinase C substra... 26 5.9
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 26 5.9
gi|19923599 calmin [Homo sapiens] 26 5.9
gi|239754166 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239748699 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo ... 26 7.7
gi|130980075 centromere protein J [Homo sapiens] 26 7.7
>gi|30425386 hypothetical protein LOC128826 [Homo sapiens]
Length = 117
Score = 248 bits (632), Expect = 1e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPSCSCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEI 60
MPSCSCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEI
Sbjct: 1 MPSCSCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEI 60
Query: 61 LLFVNAEAFSQPQPHSAPVCEGQQLTGKFSTSVLTRAGGDASPCSWERLLCYGWSHC 117
LLFVNAEAFSQPQPHSAPVCEGQQLTGKFSTSVLTRAGGDASPCSWERLLCYGWSHC
Sbjct: 61 LLFVNAEAFSQPQPHSAPVCEGQQLTGKFSTSVLTRAGGDASPCSWERLLCYGWSHC 117
>gi|4502737 cyclin-dependent kinase 5, regulatory subunit 1 [Homo
sapiens]
Length = 307
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 22 ERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQPQPHSAPVCE 81
+R V+ + S + Q S + +ITH EN LK+ L N F+QP P P
Sbjct: 53 KRIVAVSAKKKNSKKVQPNSSYQNNITHLNNEN--LKKSLSCANLSTFAQPPPAQPPAPP 110
Query: 82 GQQLTGKFSTSVLTRAGGDAS 102
QL+G ++ GG +S
Sbjct: 111 ASQLSG-------SQTGGSSS 124
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 1 MPSCSCALMAPCGPAAG--PAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLK 58
+P C AP G A P A ++ EPG+A G SP ++ E L
Sbjct: 32 LPPCEAVRWAPVGAVAEARPGATAFLEEATAEEPGAAPGSPPDSPGRTLRRLRAERRRLD 91
Query: 59 EILLFVNAEAFSQPQPHSAPVCEG 82
LL +++ F+Q Q V G
Sbjct: 92 SALLALSSH-FAQVQFRLRQVVRG 114
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 25 QQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQPQPHSAPVCEGQQ 84
Q+V G+ G+AR + P + + H+ ++ KE ++ PQP + P + Q
Sbjct: 540 QEVVAGDVGTARWLFETQP-LEMIHQREQQERQKE-----EGKSQGDPQPEAPPKGDVQT 593
Query: 85 LTGKFSTSVLTR-------------AGGDASPCSW 106
+ F T ++ A +A C+W
Sbjct: 594 IRWLFETCPMSELAEKQGSEVTDPTAKAEAQSCTW 628
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 11 PCGPAAGPAAVERTQQVARGEPGSAR------GQLQVSP 43
PC P PA E GEPG+ R GQ Q SP
Sbjct: 538 PCTPPPAPANFEDVAPTGSGEPGATRESPKANGQNQASP 576
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 39 LQVSPEMSITHKEKENAHLKEILLFVNAEAFSQPQPHSAP 78
LQ P + T+ KE + + L V+ A SQ PHSAP
Sbjct: 437 LQHQPRLCHTYALKEASGSLGLALQVSQSALSQRSPHSAP 476
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 4 CSCALMAPCGPAAGPAAVERTQ------QVARGEPGSARGQLQVSPEMSITHKEKENAHL 57
CSC L+ P GP AGP ++ V G GSA LQ I N L
Sbjct: 602 CSCPLLPPRGPGAGPGVGGPSRGPLDGFSVFGGSSGSALQALQGELSEVILSFSSLNDSL 661
Query: 58 KEILLFVNAE 67
E+ V +
Sbjct: 662 NELQTTVEGQ 671
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 3 SCSCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKE--------- 53
+C+ P P+ P+ + T+ RG +++G SP +KE
Sbjct: 851 NCTSGSSKPNSPSISPSILSNTEH-KRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQV 909
Query: 54 -----NAHLKEILLFVNAEAFSQPQPHSAP 78
N + KE N +FSQP+P + P
Sbjct: 910 RKSTLNPNAKEF----NPRSFSQPKPSTTP 935
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 13 GPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQP 72
GP GPA +T+ AR PGS G L P+ T K + A+ + P
Sbjct: 403 GPGPGPAPGAKTEPGARMGPGSGPGAL---PKTGGTTSPKHGRAEHQAASKAAAKPKTMP 459
Query: 73 QPHS-APVCEGQQLTGKFS 90
+ + P+C+ + G S
Sbjct: 460 KERAICPLCQAELNVGSKS 478
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAF 69
AP P P+ +QQ A G P + L PE+ + H + A+ +E L
Sbjct: 439 APSAPPPAPSLGPGSQQAAFGNPPA----LLQPPEVPVPHSTQFAANHQEFL-------- 486
Query: 70 SQPQPHS-APVCEGQQLTGKFSTSVLTRAGGDASP 103
P P + P+ G + S S A A+P
Sbjct: 487 --PHPQAPQPIVPGLSVVAGASASAAAVASAVAAP 519
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Query: 22 ERTQQVARGEPGSARGQLQVSP-EMSITHKEKENAHLKEILLFVNAEAFSQPQP 74
ERT+++A E QVS E+ + KEKEN HL+E L + + QP+P
Sbjct: 327 ERTRRMAEAES-------QVSHLEVILDQKEKENIHLREEL---HRRSQLQPEP 370
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEA- 68
APC P + P+A V LQ P++ TH+E+E + ++++ +E+
Sbjct: 633 APCSPPSVPSAASEPTVVL----------LQAEPQLLDTHREEEVSPARDVVEVTISESQ 682
Query: 69 ---FSQP-QPHSAP 78
F P +P +AP
Sbjct: 683 EKCFVVPEEPDAAP 696
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 27.3 bits (59), Expect = 2.6
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 18/88 (20%)
Query: 12 CGPAAGPAAVERTQQVARGEPGSARGQ------LQVSPEMSITHKEKENA---------- 55
C PA PA E + ++ + G+AR Q Q +P S T + +A
Sbjct: 104 CLPARAPAVAEENPKESKPQAGTARPQDVNRRDQQRNPGTSTTPSQPNSAGVQDTEMGPC 163
Query: 56 --HLKEILLFVNAEAFSQPQPHSAPVCE 81
HL +L + E + Q P C+
Sbjct: 164 RRHLDSVLQQLQTEVYRGAQTLYVPNCD 191
>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
Length = 422
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 3 SCSCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEK 52
S SCAL CG A PAA R RG PG++ L E+ I EK
Sbjct: 378 SDSCALDEDCGRRAEPAAAWRD----RGAPGNSLCSL--DGELDIEQIEK 421
>gi|166295179 ELG protein isoform a [Homo sapiens]
Length = 620
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGS---ARGQLQVSP 43
AP GPA G + E V RGEP G+L++ P
Sbjct: 15 APAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVP 51
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 12 CGPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQ 71
C PA ER + A G P R + + SP K+KE + KE + +
Sbjct: 382 CAPAGERG--ERRKPNAGGSPAPVRRRPEASPVQKKEKKDKERENEKEKSALARERSLKK 439
Query: 72 PQPHSAPVCEGQQLTGKFST--SVLTRAGGDASPCSWER 108
Q S P +L+ ++ S ++A + SW R
Sbjct: 440 RQ--SLPASPRARLSASTASELSPKSKARPSSPSTSWHR 476
>gi|169166645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 11 PCGPAAGPAAVERTQQVARGEPGSARG 37
P A GPAA+ R + A G P +A+G
Sbjct: 97 PSRDAHGPAAMARRSEKAAGRPRAAKG 123
>gi|239751337 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 4 CSCALMAPCG---PAAGPAAVERTQQVARGEPGSARG 37
C+ A +A CG +GP++ E + QV + G++RG
Sbjct: 66 CAWASLAVCGRELEESGPSSFEESHQVITVKTGASRG 102
>gi|113416055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 11 PCGPAAGPAAVERTQQVARGEPGSARG 37
P A GPAA+ R + A G P +A+G
Sbjct: 97 PSRDAHGPAAMARRSEKAAGRPRAAKG 123
>gi|113415539 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 11 PCGPAAGPAAVERTQQVARGEPGSARG 37
P A GPAA+ R + A G P +A+G
Sbjct: 97 PSRDAHGPAAMARRSEKAAGRPRAAKG 123
>gi|239740950 PREDICTED: similar to mitogen-activated protein kinase
8 interacting protein 1 [Homo sapiens]
Length = 442
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 14 PAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKE--------NAHLKEILLFVN 65
P AGP E Q+ A G ++GQ Q P T++ K L + L N
Sbjct: 32 PGAGPPKAESGQEPASRGQGQSQGQSQ-GPGSGDTYRPKRPTTLNLFPQVQLSQDTLNNN 90
Query: 66 A--EAFSQPQPH 75
+ + + QP+PH
Sbjct: 91 SLGKKYKQPRPH 102
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 54 NAHLKEILLFVNAEAFSQPQPHSA----PVCEGQQLTGKFSTSVLTRAGGDASPCSWERL 109
N H K+ LL +N + PQ HS V G + G+ + S ++ + G + S +
Sbjct: 1044 NLHPKQELLLMNNDDRDPPQHHSCLPDQEVINGSLINGRQADSPMSTSSGSSRSFSVASM 1103
Query: 110 L 110
L
Sbjct: 1104 L 1104
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 19 AAVERTQQVARGEPGSARGQLQVSPEMSITH---KEKENAHLKEI 60
A+VE++ Q G+P GQ+ V PE+ +T E+E+A K +
Sbjct: 3594 ASVEQSSQKECGQPA---GQVAVLPEVQVTQNPANEQESAEPKTV 3635
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 5 SCALMAPCGPAAGPAAVERTQQVARGEPGSARGQLQ-VSPEMSITHKEKENA 55
+ A A G A+G A ++ A GE G+A G Q P+ + EK A
Sbjct: 200 AAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPA 251
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 30 GEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQPQPHSAPVCEGQQLTGKF 89
G G + Q + EKE LK+ L A P ++P C Q+L +
Sbjct: 293 GVMGGSNSNQQQQMRLQQLQMEKERLRLKQQELLRQAMRNINPSTANSPKC--QELALRS 350
Query: 90 STSVLTRAGGDASPCS 105
L + GG +P S
Sbjct: 351 QLPTLEQDGGTQNPVS 366
>gi|19923599 calmin [Homo sapiens]
Length = 1002
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 26 QVARGEPGSARGQLQVSPEMSITHKEKEN 54
QV +G PG + SPE SI KEN
Sbjct: 386 QVLQGGPGKTSDISEPSPESSILSSRKEN 414
>gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGSARGQLQVSP 43
APC A GP R ++ R G+ R QL++ P
Sbjct: 53 APCSTAPGPIDCPRAEECRRKHHGTGR-QLRLRP 85
>gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGSARGQLQVSP 43
APC A GP R ++ R G+ R QL++ P
Sbjct: 53 APCSTAPGPIDCPRAEECRRKHHGTGR-QLRLRP 85
>gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo
sapiens]
Length = 91
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 10 APCGPAAGPAAVERTQQVARGEPGSARGQLQVSP 43
APC A GP R ++ R G+ R QL++ P
Sbjct: 53 APCSTAPGPIDCPRAEECRRKHHGTGR-QLRLRP 85
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 13 GPAAGPAAVERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNA 66
GPA+ AA ++ + S LQ E KEKEN L E L A
Sbjct: 531 GPASRLAAKSPIRETMKESESSLDVSLQKKLETWEREKEKENLELDEFLFLEQA 584
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,411,397
Number of Sequences: 37866
Number of extensions: 231531
Number of successful extensions: 916
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 37
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.