Guide to the Human Genome
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Name: LOC729175 Sequence: fasta or formatted (285aa) NCBI GI: 113416055
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {285aa} PREDICTED: hypothetical protein
alt mRNA {285aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         40           2
 C cysteine            1.8          5           1
 D aspartate           2.8          8           1
 E glutamate           3.9         11           2
 F phenylalanine       2.8          8           1
 G glycine             6.7         19           2
 H histidine           3.2          9           2
 I isoleucine          1.1          3           1
 K lysine              2.5          7           1
 L leucine             8.4         24           1
 M methionine          1.1          3           1
 N asparagine          0.4          1           1
 P proline            13.7         39           2
 Q glutamine           4.6         13           1
 R arginine           11.9         34           2
 S serine             11.6         33           2
 T threonine           5.6         16           3
 V valine              3.2          9           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729175             1.000   PREDICTED: hypothetical protein 
LOC729175             1.000   PREDICTED: hypothetical protein 
LOC100291624          0.043   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.043   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.043   PREDICTED: hypothetical protein XP_002342583 
LOC100129129          0.033   PREDICTED: hypothetical protein 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.031   nascent polypeptide-associated complex alpha subuni...
CXorf67               0.029   hypothetical protein LOC340602 
FNDC1                 0.029   fibronectin type III domain containing 1 
SH3BP1                0.029   SH3-domain binding protein 1 
TMEM108               0.029   transmembrane protein 108 
TMEM108               0.029   transmembrane protein 108 
LOC729915             0.027   PREDICTED: similar to Putative POM121-like protein ...
LOC100289268          0.027   PREDICTED: hypothetical protein XP_002342358 
MAPKBP1               0.025   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.025   mitogen-activated protein kinase binding protein 1 ...
SYNJ1                 0.025   synaptojanin 1 isoform c 
LOC643355             0.025   PREDICTED: hypothetical protein 
C2orf55               0.025   hypothetical protein LOC343990 
NKX1-1                0.024   PREDICTED: NK1 homeobox 1 
DACT3                 0.024   thymus expressed gene 3-like 
CABP1                 0.024   calcium binding protein 1 isoform 3 
LOC100290926          0.022   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.022   PREDICTED: hypothetical protein XP_002343379 
FLJ31945              0.022   PREDICTED: hypothetical protein 
SYNJ1                 0.022   synaptojanin 1 isoform a 
SYNJ1                 0.022   synaptojanin 1 isoform b 
PHC2                  0.022   polyhomeotic-like 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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