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Search of human proteins with 30181244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30181244 doublecortin isoform c [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30181244 doublecortin isoform c [Homo sapiens] 721 0.0
gi|30181240 doublecortin isoform c [Homo sapiens] 721 0.0
gi|30181246 doublecortin isoform a [Homo sapiens] 721 0.0
gi|30181242 doublecortin isoform b [Homo sapiens] 715 0.0
gi|4758128 doublecortin-like kinase 1 [Homo sapiens] 506 e-143
gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens] 473 e-134
gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens] 473 e-133
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] 96 5e-20
gi|117938307 doublecortin domain containing 2 [Homo sapiens] 96 7e-20
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 82 7e-16
gi|239753110 PREDICTED: doublecortin domain-containing protein E... 71 1e-12
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 71 1e-12
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 71 1e-12
gi|150456471 doublecortin domain containing 2B [Homo sapiens] 70 4e-12
gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 40 0.004
gi|153070260 myristoylated alanine-rich protein kinase C substra... 37 0.021
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.036
gi|239754761 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036
gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo ... 37 0.036
gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo ... 37 0.036
gi|239509073 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.047
gi|118572603 ubinuclein 1 [Homo sapiens] 36 0.061
gi|118572601 ubinuclein 1 [Homo sapiens] 36 0.061
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.080
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 35 0.10
gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo s... 35 0.10
gi|33946327 nucleoporin 214kDa [Homo sapiens] 35 0.14
gi|149408146 TOX high mobility group box family member 2 isoform... 35 0.14
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 35 0.14
>gi|30181244 doublecortin isoform c [Homo sapiens]
Length = 360
Score = 721 bits (1862), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
Sbjct: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
>gi|30181240 doublecortin isoform c [Homo sapiens]
Length = 360
Score = 721 bits (1862), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
Sbjct: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
>gi|30181246 doublecortin isoform a [Homo sapiens]
Length = 441
Score = 721 bits (1862), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
Sbjct: 82 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 141
Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
Sbjct: 142 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 201
Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
Sbjct: 202 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 261
Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
Sbjct: 262 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 321
Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
Sbjct: 322 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 381
Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM
Sbjct: 382 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 441
>gi|30181242 doublecortin isoform b [Homo sapiens]
Length = 365
Score = 715 bits (1846), Expect = 0.0
Identities = 360/365 (98%), Positives = 360/365 (98%), Gaps = 5/365 (1%)
Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN
Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60
Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE
Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120
Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK
Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180
Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH
Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240
Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP
Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300
Query: 301 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS 355
MRRSKSPADS ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS
Sbjct: 301 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS 360
Query: 356 LGDSM 360
LGDSM
Sbjct: 361 LGDSM 365
>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
Length = 729
Score = 506 bits (1302), Expect = e-143
Identities = 254/345 (73%), Positives = 296/345 (85%), Gaps = 9/345 (2%)
Query: 2 ELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNG 61
+++ HFDERDK R RGSR+NGLPSPTHSAHCSFYRTRTLQ LS+EKKAKKVRFYRNG
Sbjct: 6 DMELEHFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNG 65
Query: 62 DRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEE 121
DRYFKGIVYA+S DRFRSF+ALLADLTR+LSDN+NLPQGVR IYTIDG +KI S+D+L E
Sbjct: 66 DRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125
Query: 122 GESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASS--NSAQARENKDFVRP 179
GESYVC S FKK+EYTKNVNPNWSVNVKT++ +A SLA++ + ++ RENKDF+RP
Sbjct: 126 GESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRP 185
Query: 180 KLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCL 239
KLVTIIRSGVKPRKAVR+LLNKKTAHSFEQVLTDIT+AIKL++GVVK+LYTLDGKQV CL
Sbjct: 186 KLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCL 245
Query: 240 HDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPG 299
DFFGDDD+FIACGPEKFRY QDDF LDE+ECRV+K +T+ K + + ++++ KSPG
Sbjct: 246 QDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRRSTTKSPG 300
Query: 300 PMRRSKSPA--DSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK 342
P RRSKSPA S NGT SQLSTP+S +SP +PTSPGSLRK +
Sbjct: 301 PSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQR 345
>gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens]
Length = 766
Score = 473 bits (1218), Expect = e-134
Identities = 245/357 (68%), Positives = 286/357 (80%), Gaps = 24/357 (6%)
Query: 3 LDFGHFDERDKTSR--------------NMRGSRMNGL-PSPTHSAHCSFYRTRTLQALS 47
++ HF+ERDK R + G + NGL PSP HSAHCSFYRTRTLQALS
Sbjct: 7 IELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTRTLQALS 66
Query: 48 NEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTI 107
+EKKAKK RFYRNGDRYFKG+V+A+SSDRFRSFDALL +LTRSLSDN+NLPQGVR IYTI
Sbjct: 67 SEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGVRTIYTI 126
Query: 108 DGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNS 167
DGSRK+ S+DEL EGESYVC+S+ F+KV+YTKN+NPNWSVN+K + + ASS
Sbjct: 127 DGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRAL--AAASSVK 184
Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227
++ +E+KDF++PKLVT+IRSGVKPRKAVR+LLNKKTAHSFEQVLTDITEAIKL++GVVK+
Sbjct: 185 SEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIKLDSGVVKR 244
Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287
L TLDGKQVTCL DFFGDDDVFIACGPEKFRYAQDDF LD +ECRV+K + S ++ K S
Sbjct: 245 LCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYSRSSAVKYS 304
Query: 288 PTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDL 344
+KSPGP RRSKSPA S NGT SSQLSTPKS +S S+PTSPGS R K +
Sbjct: 305 ------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFRGLKQI 354
>gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens]
Length = 765
Score = 473 bits (1216), Expect = e-133
Identities = 244/352 (69%), Positives = 284/352 (80%), Gaps = 24/352 (6%)
Query: 3 LDFGHFDERDKTSR--------------NMRGSRMNGL-PSPTHSAHCSFYRTRTLQALS 47
++ HF+ERDK R + G + NGL PSP HSAHCSFYRTRTLQALS
Sbjct: 7 IELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTRTLQALS 66
Query: 48 NEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTI 107
+EKKAKK RFYRNGDRYFKG+V+A+SSDRFRSFDALL +LTRSLSDN+NLPQGVR IYTI
Sbjct: 67 SEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGVRTIYTI 126
Query: 108 DGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNS 167
DGSRK+ S+DEL EGESYVC+S+ F+KV+YTKN+NPNWSVN+K + + ASS
Sbjct: 127 DGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRAL--AAASSVK 184
Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227
++ +E+KDF++PKLVT+IRSGVKPRKAVR+LLNKKTAHSFEQVLTDITEAIKL++GVVK+
Sbjct: 185 SEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIKLDSGVVKR 244
Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287
L TLDGKQVTCL DFFGDDDVFIACGPEKFRYAQDDF LD +ECRV+K + S ++ K S
Sbjct: 245 LCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYSRSSAVKYS 304
Query: 288 PTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLR 339
+KSPGP RRSKSPA S NGT SSQLSTPKS +S S+PTSPGS R
Sbjct: 305 ------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFR 349
>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
Length = 2156
Score = 95.9 bits (237), Expect = 5e-20
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 15/215 (6%)
Query: 45 ALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYI 104
+L++ AK++ FY++GD F G+ V+ F+SFDALL +L+R + LP GVR I
Sbjct: 28 SLTHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKSFDALLDNLSRK----VPLPFGVRNI 83
Query: 105 YTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTK-NVNPNWSVNVKTSANMKAPQSLA 163
T G I ++ELE+GESY+CS + V+ K P ++ + + P +A
Sbjct: 84 STPRGRHSITRLEELEDGESYLCSHGRKVQPVDLDKARRRPRPWLSSRAISAHSPPHPVA 143
Query: 164 SSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETG 223
+ R P+ + + R+G P+ VLL+++ SFE L +TE ++
Sbjct: 144 VAAPGMPRP------PRSLVVFRNG-DPKTRRAVLLSRRVTQSFEAFLQHLTEVMQRP-- 194
Query: 224 VVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258
V KLY DG++V L +A G E F+
Sbjct: 195 -VVKLYATDGRRVPSLQAVILSSGAVVAAGREPFK 228
>gi|117938307 doublecortin domain containing 2 [Homo sapiens]
Length = 476
Score = 95.5 bits (236), Expect = 7e-20
Identities = 80/282 (28%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Query: 53 KKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQG-VRYIYTIDGSR 111
K V YRNGD ++ G + + SF+ L ++T + P G VR IYT
Sbjct: 17 KSVLVYRNGDPFYAGRRVVIHEKKVSSFEVFLKEVT----GGVQAPFGAVRNIYTPRTGH 72
Query: 112 KIGSMDELEEGESYVCSSDNFFKKVEYTK----NVNPNWSVNVKTSANMKAPQSLASSNS 167
+I +D+++ G +YV FKK+ Y P VN + + S +
Sbjct: 73 RIRKLDQIQSGGNYVAGGQEAFKKLNYLDIGEIKKRPMEVVNTEVKP------VIHSRIN 126
Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227
AR K P + +I +G A R+L+ +KT + ++ VL +TE I L +G V +
Sbjct: 127 VSARFRKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHR 186
Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287
LYTL+GK V + + ++A G +KF+ L +E K G KAS
Sbjct: 187 LYTLEGKLVESGAE-LENGQFYVAVGRDKFK------KLPYSELLFDKSTMRRPFGQKAS 239
Query: 288 PTPQ---KTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQ 326
P +K G R SKS S++ +S L K+
Sbjct: 240 SLPPIVGSRKSKGSGNDRHSKSTVGSSDNSSPQPLKRKGKKE 281
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 82.0 bits (201), Expect = 7e-16
Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 43/353 (12%)
Query: 23 MNGLP----SPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78
MN P +P+H C +++ AKK+ F + GD F G+ AV F+
Sbjct: 1 MNSTPRNAQAPSHR-ECFLPSVARTPSVTKVTPAKKITFLKRGDPRFAGVRLAVHQRAFK 59
Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138
+F AL+ + LS + L GVR + T G + ++++LE+G Y+CS KK
Sbjct: 60 TFSALMDE----LSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCYLCSD----KKPPK 111
Query: 139 T-------KNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKP 191
T + NP +AP + +S S + P+ + +I++ + P
Sbjct: 112 TPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKT--------PRRILLIKN-MDP 162
Query: 192 RKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIA 251
R V+L+ + + L ++ ++ VK+LYT GK+V L V +
Sbjct: 163 RLQQTVVLSHRNTRNLAAFLGKASDLLRFP---VKQLYTTSGKKVDSLQALLHSPSVLVC 219
Query: 252 CGPEKFRYAQDDFSLDENECRVMKG----NPSATAGPKASPTPQKTSAKSPGPMRRSKSP 307
G E FR + +E + G N + + GPK P+ + + R + P
Sbjct: 220 AGHEAFRTPAMK-NARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPERP 278
Query: 308 ADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360
G S+ + P + P TP G L D+ + +++ SL M
Sbjct: 279 -----GPSNPPVG-PAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEM 325
>gi|239753110 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 530
Score = 71.2 bits (173), Expect = 1e-12
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)
Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78
R R L +P + TR A + AK + YRNGD ++ G + +S R
Sbjct: 52 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138
+F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y
Sbjct: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198
++ P ++ +K P N + + + + + +G +++
Sbjct: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224
Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258
+ K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+
Sbjct: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282
Query: 259 Y 259
Y
Sbjct: 283 Y 283
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 71.2 bits (173), Expect = 1e-12
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)
Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78
R R L +P + TR A + AK + YRNGD ++ G + +S R
Sbjct: 158 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 217
Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138
+F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y
Sbjct: 218 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 273
Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198
++ P ++ +K P N + + + + + +G +++
Sbjct: 274 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 330
Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258
+ K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+
Sbjct: 331 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 388
Query: 259 Y 259
Y
Sbjct: 389 Y 389
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 71.2 bits (173), Expect = 1e-12
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)
Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78
R R L +P + TR A + AK + YRNGD ++ G + +S R
Sbjct: 158 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 217
Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138
+F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y
Sbjct: 218 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 273
Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198
++ P ++ +K P N + + + + + +G +++
Sbjct: 274 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 330
Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258
+ K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+
Sbjct: 331 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 388
Query: 259 Y 259
Y
Sbjct: 389 Y 389
>gi|150456471 doublecortin domain containing 2B [Homo sapiens]
Length = 349
Score = 69.7 bits (169), Expect = 4e-12
Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 30/294 (10%)
Query: 52 AKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSR 111
AK+V YRNGD +F G V+ RF + +A L ++T + + P VR +YT
Sbjct: 8 AKRVVVYRNGDPFFPGSQLVVTQRRFPTMEAFLCEVTSA----VQAPLAVRALYTPCHGH 63
Query: 112 KIGSMDELEEGESYVCSSDNFFKKVEYT--KNVNPNWSVNVKTSANMKAPQSLASSNSAQ 169
+ ++ +L+ YV + F K+ Y + +P S ++ P
Sbjct: 64 PVTNLADLKNRGQYVAAGFERFHKLHYLPHRGKDPGGK-----SCRLQGPPVTRHLCDGA 118
Query: 170 ARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLY 229
P + + R+G + L++ + +E VL +TE +KL++G V KL
Sbjct: 119 IGRQLPAGAPSYIHVFRNGDLVSPPFSLKLSQAASQDWETVLKLLTEKVKLQSGAVCKLC 178
Query: 230 TLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAG----PK 285
TL+G ++ + ++A G ++F+ D ++ +PS G P
Sbjct: 179 TLEGLPLSAGKELV-TGHYYVAVGEDEFK--------DLPYLELLVPSPSLPRGCWQPPG 229
Query: 286 ASPTPQKTSAKSPGPMRRSKSPAD------SANGTSSSQLSTPKSKQSPISTPT 333
+ P + A+ SP + SA Q P+SK +S P+
Sbjct: 230 SKSRPHRQGAQGHRAQVTQPSPKEPDRIKPSAFYARPQQTIQPRSKLPTLSFPS 283
>gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens]
Length = 1049
Score = 39.7 bits (91), Expect = 0.004
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 247 DVFIACGPEKFRYAQDDFSLDENECRVMKGNPSA---TAGPKASPTPQKTSAKSPGPMRR 303
+ I G E + + Q DFS DE+ + + A + G ASP+ K S +SP P+
Sbjct: 168 EAIIGVGKEDYPHTQGDFSFDEDSSDALSPDQPASQESQGSAASPSEPKVS-ESPSPV-T 225
Query: 304 SKSPAD--SANGTSSSQLSTPKSKQSPISTPTSP 335
+ +PA S + T L TP + P P +P
Sbjct: 226 TNTPAQFASVSPTVPEFLKTPPTADQPPPRPAAP 259
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 37.4 bits (85), Expect = 0.021
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSP--ADSANGTSSSQLSTPKSKQSPISTP 332
KG P+A A P+A +P + A + G SP A+ +++S S+PK++ +P
Sbjct: 87 KGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGATPSP 146
Query: 333 TSPGSLRKHK 342
++ +K K
Sbjct: 147 SNETPKKKKK 156
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 36.6 bits (83), Expect = 0.036
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 247 DVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKS 306
D+ A GP+ + Q ++D ++ N + ++ +ASPT S SP +RS S
Sbjct: 3471 DLDSASGPQVSNFTQ---TVDAPNSMGLEQNKALSSAVQASPTSPGGSPSSPSSGQRSAS 3527
Query: 307 PADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDS 353
P S G + PK K P G+ +KHK +L S ++
Sbjct: 3528 P--SVPGPTK-----PKPKTKRFQLPLDKGNGKKHKVSHLRTSSSEA 3567
>gi|239754761 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
Query: 330 -STPTSPGSLRK 340
++P PG RK
Sbjct: 67 GASPLLPGGSRK 78
>gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo
sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
Query: 330 -STPTSPGSLRK 340
++P PG RK
Sbjct: 67 GASPLLPGGSRK 78
>gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo
sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
Query: 330 -STPTSPGSLRK 340
++P PG RK
Sbjct: 67 GASPLLPGGSRK 78
>gi|239509073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
Query: 330 -STPTSPGSLRK 340
++P PG RK
Sbjct: 67 GASPLLPGGSRK 78
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.2 bits (82), Expect = 0.047
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 275 KGNPSATAGPKASPTP-------QKTSAKSPGPMRRSKSPA---DSANGTSSSQLSTPKS 324
KG P AT+ PK +PTP K S +P P PA S GT + +TP S
Sbjct: 1298 KGGP-ATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS 1356
Query: 325 KQSPIST-----PTSPGSLRKHK 342
K P + PT P + HK
Sbjct: 1357 KGGPTTPSSKEGPTPPAATPSHK 1379
Score = 35.8 bits (81), Expect = 0.061
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKS-KQSPISTPT 333
KG P AT PK +PTP + SP + S + G S+ +TP S K SP +TP
Sbjct: 997 KGGP-ATPSPKGAPTPPAVTPPSP---KGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052
Query: 334 SPGS 337
G+
Sbjct: 1053 PKGA 1056
Score = 33.5 bits (75), Expect = 0.30
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPG--PMRRSKSPADSANGTSSSQ-------LSTPKSK 325
KG+P T PK +PTP + SP P + +P+ T+ S +TP K
Sbjct: 1321 KGSPG-TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHK 1379
Query: 326 QSPISTPTSP 335
P TP SP
Sbjct: 1380 GGPAMTPPSP 1389
Score = 33.1 bits (74), Expect = 0.40
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334
KG+P+AT PK +PT + SP + S G + +TP S + +TP+
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSP----KGGPATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Query: 335 PGS 337
G+
Sbjct: 1100 KGA 1102
Score = 31.6 bits (70), Expect = 1.2
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334
KG P AT PK +PTP +A P P +P S G + +TP S + +TP+
Sbjct: 951 KGGP-ATPSPKWAPTP--PAATPPSPKGGPATP--SPKGAPTPPAATPPSPKGGPATPSP 1005
Query: 335 PGS 337
G+
Sbjct: 1006 KGA 1008
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPK----------S 324
KG+P+AT PK + TP + SP + A T ++ L +PK +
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 325 KQSPISTPTSP 335
P +TP SP
Sbjct: 1080 PTPPAATPPSP 1090
Score = 31.6 bits (70), Expect = 1.2
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 278 PSATA-GPKASPTPQKTSAKSPGPMRRSKSPADSA-NGTSSSQLSTPKSKQSPISTPTSP 335
P+ T+ PK +PTP + SP K PA A GT +S TP S + +PTSP
Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSP-----EKGPATPAPKGTPTSPPVTPSSLK---DSPTSP 1654
Query: 336 GSL 338
S+
Sbjct: 1655 ASV 1657
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334
KG P AT PK +P P +A P P +P G ++ +TP S + ++TP
Sbjct: 1091 KGGP-ATPSPKGAPMP--PAATPPSPKGGLATPPH--KGAPTTPAATPPSPKGGLATPPP 1145
Query: 335 PGS 337
G+
Sbjct: 1146 KGA 1148
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 280 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGS 337
AT PK +PT + SP + SP G ++ +TP S + ++TP+ G+
Sbjct: 1187 ATPSPKGAPTTPAATPPSPKGGLATPSP----KGAPTTPAATPPSPKGGLATPSPKGA 1240
Score = 29.3 bits (64), Expect = 5.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 280 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGS 337
AT PK +PT + SP + SP G ++ +TP S + ++TP+ G+
Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSP----KGAPTTPAATPPSPKGGLATPSPKGA 1217
Score = 28.5 bits (62), Expect = 9.8
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 250 IACGPEKFRYAQDDFSLDENECRVMKGNPSATAG-PKASPTPQKTSAKSPGPMRRSKSPA 308
I C P FSL ++K +P+AT P + P S+ P+ +
Sbjct: 391 ITCSPSGSLNVATSFSLSPTTSLILKSSPNATYHYPLVAQMP--VSSVGTTPLVVTNPCT 448
Query: 309 DSANGTSSSQLST---PKSKQSPIST--PTSPGSL 338
+A T++ +++T P PIS PTSP +L
Sbjct: 449 IAAAPTTTFEVATCVSPPMSSGPISNIEPTSPAAL 483
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 275 KGNPS------ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQS- 327
KG P+ A P A+P K +P P PA + S +TP K +
Sbjct: 974 KGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS 1033
Query: 328 --PISTPTSP 335
P +TP SP
Sbjct: 1034 TPPAATPPSP 1043
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 35.8 bits (81), Expect = 0.061
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 283 GPKASPTP--------QKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334
GPKASPT KT+AK G + + + + +SSS TP S S +S P
Sbjct: 829 GPKASPTQCHRSLLQLVKTAAKGQGFHPSAPATSGGLSASSSSSHKTPASSSSALSHPAK 888
Query: 335 PGSL 338
P S+
Sbjct: 889 PHSV 892
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 35.8 bits (81), Expect = 0.061
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 283 GPKASPTP--------QKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334
GPKASPT KT+AK G + + + + +SSS TP S S +S P
Sbjct: 829 GPKASPTQCHRSLLQLVKTAAKGQGFHPSAPATSGGLSASSSSSHKTPASSSSALSHPAK 888
Query: 335 PGSL 338
P S+
Sbjct: 889 PHSV 892
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 35.4 bits (80), Expect = 0.080
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 272 RVMKGNPSATAG--------PKASPTPQK-TSAKSPGPMRRSKSPADSANGTSSSQLSTP 322
R K NPSA++G P SP P K + SPGP + + S SA+ SSS +P
Sbjct: 321 RPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPS-VSSASWKSSS--VSP 377
Query: 323 KSKQSPISTPTS----PGSLRK 340
S +SP ++P S P LRK
Sbjct: 378 SSWKSPPASPESWKSGPPELRK 399
>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
sapiens]
Length = 1719
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 279 SATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSS-SQLSTPKSKQSPISTPTSPGS 337
S +A + P+P + S S G + S +PA +G S S + S S +S+P SP S
Sbjct: 1641 SYSAKRQPMPSPSEGSLSSGGMDQGSDAPARDFDGEDSDSPRHSTASNSSNLSSPPSPAS 1700
Query: 338 LRKHKDLYL 346
RK K L L
Sbjct: 1701 PRKTKSLSL 1709
>gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo
sapiens]
Length = 1638
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 279 SATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSS-SQLSTPKSKQSPISTPTSPGS 337
S +A + P+P + S S G + S +PA +G S S + S S +S+P SP S
Sbjct: 1560 SYSAKRQPMPSPSEGSLSSGGMDQGSDAPARDFDGEDSDSPRHSTASNSSNLSSPPSPAS 1619
Query: 338 LRKHKDLYL 346
RK K L L
Sbjct: 1620 PRKTKSLSL 1628
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 278 PSATAGPKASPTPQKTSAKSPGP------MRRSKSPADSANGTSSSQLSTPKSKQSPIST 331
PS A P++SP TSA + P R +P+ +A T+SS+L TP SK +
Sbjct: 1263 PSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLF 1322
Query: 332 PTS 334
P+S
Sbjct: 1323 PSS 1325
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 34.7 bits (78), Expect = 0.14
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 243 FGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASP---TPQKTSAKSPG 299
FGD +A + Q S D+ E + + NP A P P P S +P
Sbjct: 282 FGDVSKIVASMWDSLGEEQKQSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLTPS 341
Query: 300 PMRRSKSPADSAN--GTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLP 347
++ +S A A+ T S+ P SP P+ P S H+ L LP
Sbjct: 342 DLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQLSLP 391
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 278 PSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTP 332
P AT G +P ++ S S S + SA+ +SSS S+P P S+P
Sbjct: 68 PPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 288 PTPQKTSAKSPGP----MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKD 343
P P T +P P S S + S++ +SSS S+ S S P SP + +
Sbjct: 66 PLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRV 125
Query: 344 LYLP 347
L LP
Sbjct: 126 LELP 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,078,659
Number of Sequences: 37866
Number of extensions: 662559
Number of successful extensions: 5238
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 4202
Number of HSP's gapped (non-prelim): 1123
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.