BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|30181240 doublecortin isoform c [Homo sapiens] (360 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|30181244 doublecortin isoform c [Homo sapiens] 721 0.0 gi|30181240 doublecortin isoform c [Homo sapiens] 721 0.0 gi|30181246 doublecortin isoform a [Homo sapiens] 721 0.0 gi|30181242 doublecortin isoform b [Homo sapiens] 715 0.0 gi|4758128 doublecortin-like kinase 1 [Homo sapiens] 506 e-143 gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens] 473 e-134 gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens] 473 e-133 gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] 96 5e-20 gi|117938307 doublecortin domain containing 2 [Homo sapiens] 96 7e-20 gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 82 7e-16 gi|239753110 PREDICTED: doublecortin domain-containing protein E... 71 1e-12 gi|239747673 PREDICTED: doublecortin domain-containing protein E... 71 1e-12 gi|239741542 PREDICTED: doublecortin domain-containing protein E... 71 1e-12 gi|150456471 doublecortin domain containing 2B [Homo sapiens] 70 4e-12 gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 40 0.004 gi|153070260 myristoylated alanine-rich protein kinase C substra... 37 0.021 gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.036 gi|239754761 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036 gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo ... 37 0.036 gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo ... 37 0.036 gi|239509073 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036 gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.047 gi|118572603 ubinuclein 1 [Homo sapiens] 36 0.061 gi|118572601 ubinuclein 1 [Homo sapiens] 36 0.061 gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.080 gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 35 0.10 gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo s... 35 0.10 gi|33946327 nucleoporin 214kDa [Homo sapiens] 35 0.14 gi|149408146 TOX high mobility group box family member 2 isoform... 35 0.14 gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 35 0.14 >gi|30181244 doublecortin isoform c [Homo sapiens] Length = 360 Score = 721 bits (1862), Expect = 0.0 Identities = 360/360 (100%), Positives = 360/360 (100%) Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM Sbjct: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 >gi|30181240 doublecortin isoform c [Homo sapiens] Length = 360 Score = 721 bits (1862), Expect = 0.0 Identities = 360/360 (100%), Positives = 360/360 (100%) Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM Sbjct: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 >gi|30181246 doublecortin isoform a [Homo sapiens] Length = 441 Score = 721 bits (1862), Expect = 0.0 Identities = 360/360 (100%), Positives = 360/360 (100%) Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN Sbjct: 82 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 141 Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE Sbjct: 142 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 201 Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK Sbjct: 202 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 261 Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH Sbjct: 262 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 321 Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP Sbjct: 322 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 381 Query: 301 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM Sbjct: 382 MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 441 >gi|30181242 doublecortin isoform b [Homo sapiens] Length = 365 Score = 715 bits (1846), Expect = 0.0 Identities = 360/365 (98%), Positives = 360/365 (98%), Gaps = 5/365 (1%) Query: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN Sbjct: 1 MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRN 60 Query: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE Sbjct: 61 GDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELE 120 Query: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK Sbjct: 121 EGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK 180 Query: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH Sbjct: 181 LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLH 240 Query: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP Sbjct: 241 DFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGP 300 Query: 301 MRRSKSPADS-----ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS 355 MRRSKSPADS ANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS Sbjct: 301 MRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDS 360 Query: 356 LGDSM 360 LGDSM Sbjct: 361 LGDSM 365 >gi|4758128 doublecortin-like kinase 1 [Homo sapiens] Length = 729 Score = 506 bits (1302), Expect = e-143 Identities = 254/345 (73%), Positives = 296/345 (85%), Gaps = 9/345 (2%) Query: 2 ELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNG 61 +++ HFDERDK R RGSR+NGLPSPTHSAHCSFYRTRTLQ LS+EKKAKKVRFYRNG Sbjct: 6 DMELEHFDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNG 65 Query: 62 DRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEE 121 DRYFKGIVYA+S DRFRSF+ALLADLTR+LSDN+NLPQGVR IYTIDG +KI S+D+L E Sbjct: 66 DRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125 Query: 122 GESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASS--NSAQARENKDFVRP 179 GESYVC S FKK+EYTKNVNPNWSVNVKT++ +A SLA++ + ++ RENKDF+RP Sbjct: 126 GESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRP 185 Query: 180 KLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCL 239 KLVTIIRSGVKPRKAVR+LLNKKTAHSFEQVLTDIT+AIKL++GVVK+LYTLDGKQV CL Sbjct: 186 KLVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCL 245 Query: 240 HDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPG 299 DFFGDDD+FIACGPEKFRY QDDF LDE+ECRV+K +T+ K + + ++++ KSPG Sbjct: 246 QDFFGDDDIFIACGPEKFRY-QDDFLLDESECRVVK----STSYTKIASSSRRSTTKSPG 300 Query: 300 PMRRSKSPA--DSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHK 342 P RRSKSPA S NGT SQLSTP+S +SP +PTSPGSLRK + Sbjct: 301 PSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSPSPTSPGSLRKQR 345 >gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens] Length = 766 Score = 473 bits (1218), Expect = e-134 Identities = 245/357 (68%), Positives = 286/357 (80%), Gaps = 24/357 (6%) Query: 3 LDFGHFDERDKTSR--------------NMRGSRMNGL-PSPTHSAHCSFYRTRTLQALS 47 ++ HF+ERDK R + G + NGL PSP HSAHCSFYRTRTLQALS Sbjct: 7 IELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTRTLQALS 66 Query: 48 NEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTI 107 +EKKAKK RFYRNGDRYFKG+V+A+SSDRFRSFDALL +LTRSLSDN+NLPQGVR IYTI Sbjct: 67 SEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGVRTIYTI 126 Query: 108 DGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNS 167 DGSRK+ S+DEL EGESYVC+S+ F+KV+YTKN+NPNWSVN+K + + ASS Sbjct: 127 DGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRAL--AAASSVK 184 Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227 ++ +E+KDF++PKLVT+IRSGVKPRKAVR+LLNKKTAHSFEQVLTDITEAIKL++GVVK+ Sbjct: 185 SEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIKLDSGVVKR 244 Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287 L TLDGKQVTCL DFFGDDDVFIACGPEKFRYAQDDF LD +ECRV+K + S ++ K S Sbjct: 245 LCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYSRSSAVKYS 304 Query: 288 PTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDL 344 +KSPGP RRSKSPA S NGT SSQLSTPKS +S S+PTSPGS R K + Sbjct: 305 ------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFRGLKQI 354 >gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens] Length = 765 Score = 473 bits (1216), Expect = e-133 Identities = 244/352 (69%), Positives = 284/352 (80%), Gaps = 24/352 (6%) Query: 3 LDFGHFDERDKTSR--------------NMRGSRMNGL-PSPTHSAHCSFYRTRTLQALS 47 ++ HF+ERDK R + G + NGL PSP HSAHCSFYRTRTLQALS Sbjct: 7 IELEHFEERDKRPRPGSRRGAPSSSGGSSSSGPKGNGLIPSPAHSAHCSFYRTRTLQALS 66 Query: 48 NEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTI 107 +EKKAKK RFYRNGDRYFKG+V+A+SSDRFRSFDALL +LTRSLSDN+NLPQGVR IYTI Sbjct: 67 SEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLIELTRSLSDNVNLPQGVRTIYTI 126 Query: 108 DGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNS 167 DGSRK+ S+DEL EGESYVC+S+ F+KV+YTKN+NPNWSVN+K + + ASS Sbjct: 127 DGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPNWSVNIKGGTSRAL--AAASSVK 184 Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227 ++ +E+KDF++PKLVT+IRSGVKPRKAVR+LLNKKTAHSFEQVLTDITEAIKL++GVVK+ Sbjct: 185 SEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSFEQVLTDITEAIKLDSGVVKR 244 Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287 L TLDGKQVTCL DFFGDDDVFIACGPEKFRYAQDDF LD +ECRV+K + S ++ K S Sbjct: 245 LCTLDGKQVTCLQDFFGDDDVFIACGPEKFRYAQDDFVLDHSECRVLKSSYSRSSAVKYS 304 Query: 288 PTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLR 339 +KSPGP RRSKSPA S NGT SSQLSTPKS +S S+PTSPGS R Sbjct: 305 ------GSKSPGPSRRSKSPA-SVNGTPSSQLSTPKSTKSSSSSPTSPGSFR 349 >gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] Length = 2156 Score = 95.9 bits (237), Expect = 5e-20 Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 15/215 (6%) Query: 45 ALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYI 104 +L++ AK++ FY++GD F G+ V+ F+SFDALL +L+R + LP GVR I Sbjct: 28 SLTHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKSFDALLDNLSRK----VPLPFGVRNI 83 Query: 105 YTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTK-NVNPNWSVNVKTSANMKAPQSLA 163 T G I ++ELE+GESY+CS + V+ K P ++ + + P +A Sbjct: 84 STPRGRHSITRLEELEDGESYLCSHGRKVQPVDLDKARRRPRPWLSSRAISAHSPPHPVA 143 Query: 164 SSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETG 223 + R P+ + + R+G P+ VLL+++ SFE L +TE ++ Sbjct: 144 VAAPGMPRP------PRSLVVFRNG-DPKTRRAVLLSRRVTQSFEAFLQHLTEVMQRP-- 194 Query: 224 VVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258 V KLY DG++V L +A G E F+ Sbjct: 195 -VVKLYATDGRRVPSLQAVILSSGAVVAAGREPFK 228 >gi|117938307 doublecortin domain containing 2 [Homo sapiens] Length = 476 Score = 95.5 bits (236), Expect = 7e-20 Identities = 80/282 (28%), Positives = 123/282 (43%), Gaps = 25/282 (8%) Query: 53 KKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQG-VRYIYTIDGSR 111 K V YRNGD ++ G + + SF+ L ++T + P G VR IYT Sbjct: 17 KSVLVYRNGDPFYAGRRVVIHEKKVSSFEVFLKEVT----GGVQAPFGAVRNIYTPRTGH 72 Query: 112 KIGSMDELEEGESYVCSSDNFFKKVEYTK----NVNPNWSVNVKTSANMKAPQSLASSNS 167 +I +D+++ G +YV FKK+ Y P VN + + S + Sbjct: 73 RIRKLDQIQSGGNYVAGGQEAFKKLNYLDIGEIKKRPMEVVNTEVKP------VIHSRIN 126 Query: 168 AQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKK 227 AR K P + +I +G A R+L+ +KT + ++ VL +TE I L +G V + Sbjct: 127 VSARFRKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHR 186 Query: 228 LYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKAS 287 LYTL+GK V + + ++A G +KF+ L +E K G KAS Sbjct: 187 LYTLEGKLVESGAE-LENGQFYVAVGRDKFK------KLPYSELLFDKSTMRRPFGQKAS 239 Query: 288 PTPQ---KTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQ 326 P +K G R SKS S++ +S L K+ Sbjct: 240 SLPPIVGSRKSKGSGNDRHSKSTVGSSDNSSPQPLKRKGKKE 281 >gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] Length = 2400 Score = 82.0 bits (201), Expect = 7e-16 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 43/353 (12%) Query: 23 MNGLP----SPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78 MN P +P+H C +++ AKK+ F + GD F G+ AV F+ Sbjct: 1 MNSTPRNAQAPSHR-ECFLPSVARTPSVTKVTPAKKITFLKRGDPRFAGVRLAVHQRAFK 59 Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138 +F AL+ + LS + L GVR + T G + ++++LE+G Y+CS KK Sbjct: 60 TFSALMDE----LSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCYLCSD----KKPPK 111 Query: 139 T-------KNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKP 191 T + NP +AP + +S S + P+ + +I++ + P Sbjct: 112 TPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKT--------PRRILLIKN-MDP 162 Query: 192 RKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIA 251 R V+L+ + + L ++ ++ VK+LYT GK+V L V + Sbjct: 163 RLQQTVVLSHRNTRNLAAFLGKASDLLRFP---VKQLYTTSGKKVDSLQALLHSPSVLVC 219 Query: 252 CGPEKFRYAQDDFSLDENECRVMKG----NPSATAGPKASPTPQKTSAKSPGPMRRSKSP 307 G E FR + +E + G N + + GPK P+ + + R + P Sbjct: 220 AGHEAFRTPAMK-NARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPERP 278 Query: 308 ADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDSDSLGDSM 360 G S+ + P + P TP G L D+ + +++ SL M Sbjct: 279 -----GPSNPPVG-PAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEM 325 >gi|239753110 PREDICTED: doublecortin domain-containing protein ENSP00000382097-like [Homo sapiens] Length = 530 Score = 71.2 bits (173), Expect = 1e-12 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%) Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78 R R L +P + TR A + AK + YRNGD ++ G + +S R Sbjct: 52 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111 Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138 +F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y Sbjct: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167 Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198 ++ P ++ +K P N + + + + + +G +++ Sbjct: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224 Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258 + K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+ Sbjct: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282 Query: 259 Y 259 Y Sbjct: 283 Y 283 >gi|239747673 PREDICTED: doublecortin domain-containing protein ENSP00000382097-like [Homo sapiens] Length = 714 Score = 71.2 bits (173), Expect = 1e-12 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%) Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78 R R L +P + TR A + AK + YRNGD ++ G + +S R Sbjct: 158 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 217 Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138 +F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y Sbjct: 218 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 273 Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198 ++ P ++ +K P N + + + + + +G +++ Sbjct: 274 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 330 Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258 + K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+ Sbjct: 331 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 388 Query: 259 Y 259 Y Sbjct: 389 Y 389 >gi|239741542 PREDICTED: doublecortin domain-containing protein ENSP00000382097-like [Homo sapiens] Length = 510 Score = 71.2 bits (173), Expect = 1e-12 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%) Query: 19 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78 R R L +P + TR A + AK + YRNGD ++ G + +S R Sbjct: 158 RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 217 Query: 79 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138 +F+ALL LT + +++P GVR ++T ++ +D L+ G YV + FK+++Y Sbjct: 218 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 273 Query: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198 ++ P ++ +K P N + + + + + +G +++ Sbjct: 274 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 330 Query: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258 + K + ++ VL I E + G V+KL+T++G + D D+ ++A G E F+ Sbjct: 331 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 388 Query: 259 Y 259 Y Sbjct: 389 Y 389 >gi|150456471 doublecortin domain containing 2B [Homo sapiens] Length = 349 Score = 69.7 bits (169), Expect = 4e-12 Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 30/294 (10%) Query: 52 AKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSR 111 AK+V YRNGD +F G V+ RF + +A L ++T + + P VR +YT Sbjct: 8 AKRVVVYRNGDPFFPGSQLVVTQRRFPTMEAFLCEVTSA----VQAPLAVRALYTPCHGH 63 Query: 112 KIGSMDELEEGESYVCSSDNFFKKVEYT--KNVNPNWSVNVKTSANMKAPQSLASSNSAQ 169 + ++ +L+ YV + F K+ Y + +P S ++ P Sbjct: 64 PVTNLADLKNRGQYVAAGFERFHKLHYLPHRGKDPGGK-----SCRLQGPPVTRHLCDGA 118 Query: 170 ARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLY 229 P + + R+G + L++ + +E VL +TE +KL++G V KL Sbjct: 119 IGRQLPAGAPSYIHVFRNGDLVSPPFSLKLSQAASQDWETVLKLLTEKVKLQSGAVCKLC 178 Query: 230 TLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAG----PK 285 TL+G ++ + ++A G ++F+ D ++ +PS G P Sbjct: 179 TLEGLPLSAGKELV-TGHYYVAVGEDEFK--------DLPYLELLVPSPSLPRGCWQPPG 229 Query: 286 ASPTPQKTSAKSPGPMRRSKSPAD------SANGTSSSQLSTPKSKQSPISTPT 333 + P + A+ SP + SA Q P+SK +S P+ Sbjct: 230 SKSRPHRQGAQGHRAQVTQPSPKEPDRIKPSAFYARPQQTIQPRSKLPTLSFPS 283 >gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] Length = 1049 Score = 39.7 bits (91), Expect = 0.004 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 247 DVFIACGPEKFRYAQDDFSLDENECRVMKGNPSA---TAGPKASPTPQKTSAKSPGPMRR 303 + I G E + + Q DFS DE+ + + A + G ASP+ K S +SP P+ Sbjct: 168 EAIIGVGKEDYPHTQGDFSFDEDSSDALSPDQPASQESQGSAASPSEPKVS-ESPSPV-T 225 Query: 304 SKSPAD--SANGTSSSQLSTPKSKQSPISTPTSP 335 + +PA S + T L TP + P P +P Sbjct: 226 TNTPAQFASVSPTVPEFLKTPPTADQPPPRPAAP 259 >gi|153070260 myristoylated alanine-rich protein kinase C substrate [Homo sapiens] Length = 332 Score = 37.4 bits (85), Expect = 0.021 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSP--ADSANGTSSSQLSTPKSKQSPISTP 332 KG P+A A P+A +P + A + G SP A+ +++S S+PK++ +P Sbjct: 87 KGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGATPSP 146 Query: 333 TSPGSLRKHK 342 ++ +K K Sbjct: 147 SNETPKKKKK 156 >gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo sapiens] Length = 3969 Score = 36.6 bits (83), Expect = 0.036 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%) Query: 247 DVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKS 306 D+ A GP+ + Q ++D ++ N + ++ +ASPT S SP +RS S Sbjct: 3471 DLDSASGPQVSNFTQ---TVDAPNSMGLEQNKALSSAVQASPTSPGGSPSSPSSGQRSAS 3527 Query: 307 PADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDDS 353 P S G + PK K P G+ +KHK +L S ++ Sbjct: 3528 P--SVPGPTK-----PKPKTKRFQLPLDKGNGKKHKVSHLRTSSSEA 3567 >gi|239754761 PREDICTED: hypothetical protein [Homo sapiens] Length = 154 Score = 36.6 bits (83), Expect = 0.036 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329 G P T+G P + P + SPGP + K+P S +G S S TP + + Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66 Query: 330 -STPTSPGSLRK 340 ++P PG RK Sbjct: 67 GASPLLPGGSRK 78 >gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo sapiens] Length = 154 Score = 36.6 bits (83), Expect = 0.036 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329 G P T+G P + P + SPGP + K+P S +G S S TP + + Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66 Query: 330 -STPTSPGSLRK 340 ++P PG RK Sbjct: 67 GASPLLPGGSRK 78 >gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo sapiens] Length = 154 Score = 36.6 bits (83), Expect = 0.036 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329 G P T+G P + P + SPGP + K+P S +G S S TP + + Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66 Query: 330 -STPTSPGSLRK 340 ++P PG RK Sbjct: 67 GASPLLPGGSRK 78 >gi|239509073 PREDICTED: hypothetical protein [Homo sapiens] Length = 154 Score = 36.6 bits (83), Expect = 0.036 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329 G P T+G P + P + SPGP + K+P S +G S S TP + + Sbjct: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66 Query: 330 -STPTSPGSLRK 340 ++P PG RK Sbjct: 67 GASPLLPGGSRK 78 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 36.2 bits (82), Expect = 0.047 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 16/83 (19%) Query: 275 KGNPSATAGPKASPTP-------QKTSAKSPGPMRRSKSPA---DSANGTSSSQLSTPKS 324 KG P AT+ PK +PTP K S +P P PA S GT + +TP S Sbjct: 1298 KGGP-ATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS 1356 Query: 325 KQSPIST-----PTSPGSLRKHK 342 K P + PT P + HK Sbjct: 1357 KGGPTTPSSKEGPTPPAATPSHK 1379 Score = 35.8 bits (81), Expect = 0.061 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKS-KQSPISTPT 333 KG P AT PK +PTP + SP + S + G S+ +TP S K SP +TP Sbjct: 997 KGGP-ATPSPKGAPTPPAVTPPSP---KGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052 Query: 334 SPGS 337 G+ Sbjct: 1053 PKGA 1056 Score = 33.5 bits (75), Expect = 0.30 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 10/70 (14%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPG--PMRRSKSPADSANGTSSSQ-------LSTPKSK 325 KG+P T PK +PTP + SP P + +P+ T+ S +TP K Sbjct: 1321 KGSPG-TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHK 1379 Query: 326 QSPISTPTSP 335 P TP SP Sbjct: 1380 GGPAMTPPSP 1389 Score = 33.1 bits (74), Expect = 0.40 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334 KG+P+AT PK +PT + SP + S G + +TP S + +TP+ Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSP----KGGPATPSLKGAPTPPAATPPSPKGGPATPSP 1099 Query: 335 PGS 337 G+ Sbjct: 1100 KGA 1102 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334 KG P AT PK +PTP +A P P +P S G + +TP S + +TP+ Sbjct: 951 KGGP-ATPSPKWAPTP--PAATPPSPKGGPATP--SPKGAPTPPAATPPSPKGGPATPSP 1005 Query: 335 PGS 337 G+ Sbjct: 1006 KGA 1008 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPK----------S 324 KG+P+AT PK + TP + SP + A T ++ L +PK + Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079 Query: 325 KQSPISTPTSP 335 P +TP SP Sbjct: 1080 PTPPAATPPSP 1090 Score = 31.6 bits (70), Expect = 1.2 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 10/63 (15%) Query: 278 PSATA-GPKASPTPQKTSAKSPGPMRRSKSPADSA-NGTSSSQLSTPKSKQSPISTPTSP 335 P+ T+ PK +PTP + SP K PA A GT +S TP S + +PTSP Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSP-----EKGPATPAPKGTPTSPPVTPSSLK---DSPTSP 1654 Query: 336 GSL 338 S+ Sbjct: 1655 ASV 1657 Score = 30.0 bits (66), Expect = 3.4 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 275 KGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334 KG P AT PK +P P +A P P +P G ++ +TP S + ++TP Sbjct: 1091 KGGP-ATPSPKGAPMP--PAATPPSPKGGLATPPH--KGAPTTPAATPPSPKGGLATPPP 1145 Query: 335 PGS 337 G+ Sbjct: 1146 KGA 1148 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 280 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGS 337 AT PK +PT + SP + SP G ++ +TP S + ++TP+ G+ Sbjct: 1187 ATPSPKGAPTTPAATPPSPKGGLATPSP----KGAPTTPAATPPSPKGGLATPSPKGA 1240 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 280 ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGS 337 AT PK +PT + SP + SP G ++ +TP S + ++TP+ G+ Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSP----KGAPTTPAATPPSPKGGLATPSPKGA 1217 Score = 28.5 bits (62), Expect = 9.8 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%) Query: 250 IACGPEKFRYAQDDFSLDENECRVMKGNPSATAG-PKASPTPQKTSAKSPGPMRRSKSPA 308 I C P FSL ++K +P+AT P + P S+ P+ + Sbjct: 391 ITCSPSGSLNVATSFSLSPTTSLILKSSPNATYHYPLVAQMP--VSSVGTTPLVVTNPCT 448 Query: 309 DSANGTSSSQLST---PKSKQSPIST--PTSPGSL 338 +A T++ +++T P PIS PTSP +L Sbjct: 449 IAAAPTTTFEVATCVSPPMSSGPISNIEPTSPAAL 483 Score = 28.5 bits (62), Expect = 9.8 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 275 KGNPS------ATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQS- 327 KG P+ A P A+P K +P P PA + S +TP K + Sbjct: 974 KGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS 1033 Query: 328 --PISTPTSP 335 P +TP SP Sbjct: 1034 TPPAATPPSP 1043 >gi|118572603 ubinuclein 1 [Homo sapiens] Length = 1134 Score = 35.8 bits (81), Expect = 0.061 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 283 GPKASPTP--------QKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334 GPKASPT KT+AK G + + + + +SSS TP S S +S P Sbjct: 829 GPKASPTQCHRSLLQLVKTAAKGQGFHPSAPATSGGLSASSSSSHKTPASSSSALSHPAK 888 Query: 335 PGSL 338 P S+ Sbjct: 889 PHSV 892 >gi|118572601 ubinuclein 1 [Homo sapiens] Length = 1134 Score = 35.8 bits (81), Expect = 0.061 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 283 GPKASPTP--------QKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS 334 GPKASPT KT+AK G + + + + +SSS TP S S +S P Sbjct: 829 GPKASPTQCHRSLLQLVKTAAKGQGFHPSAPATSGGLSASSSSSHKTPASSSSALSHPAK 888 Query: 335 PGSL 338 P S+ Sbjct: 889 PHSV 892 >gi|41281612 zinc finger protein 828 [Homo sapiens] Length = 812 Score = 35.4 bits (80), Expect = 0.080 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 16/82 (19%) Query: 272 RVMKGNPSATAG--------PKASPTPQK-TSAKSPGPMRRSKSPADSANGTSSSQLSTP 322 R K NPSA++G P SP P K + SPGP + + S SA+ SSS +P Sbjct: 321 RPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPS-VSSASWKSSS--VSP 377 Query: 323 KSKQSPISTPTS----PGSLRK 340 S +SP ++P S P LRK Sbjct: 378 SSWKSPPASPESWKSGPPELRK 399 >gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo sapiens] Length = 1719 Score = 35.0 bits (79), Expect = 0.10 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 279 SATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSS-SQLSTPKSKQSPISTPTSPGS 337 S +A + P+P + S S G + S +PA +G S S + S S +S+P SP S Sbjct: 1641 SYSAKRQPMPSPSEGSLSSGGMDQGSDAPARDFDGEDSDSPRHSTASNSSNLSSPPSPAS 1700 Query: 338 LRKHKDLYL 346 RK K L L Sbjct: 1701 PRKTKSLSL 1709 >gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo sapiens] Length = 1638 Score = 35.0 bits (79), Expect = 0.10 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 279 SATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSS-SQLSTPKSKQSPISTPTSPGS 337 S +A + P+P + S S G + S +PA +G S S + S S +S+P SP S Sbjct: 1560 SYSAKRQPMPSPSEGSLSSGGMDQGSDAPARDFDGEDSDSPRHSTASNSSNLSSPPSPAS 1619 Query: 338 LRKHKDLYL 346 RK K L L Sbjct: 1620 PRKTKSLSL 1628 >gi|33946327 nucleoporin 214kDa [Homo sapiens] Length = 2090 Score = 34.7 bits (78), Expect = 0.14 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 278 PSATAGPKASPTPQKTSAKSPGP------MRRSKSPADSANGTSSSQLSTPKSKQSPIST 331 PS A P++SP TSA + P R +P+ +A T+SS+L TP SK + Sbjct: 1263 PSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLF 1322 Query: 332 PTS 334 P+S Sbjct: 1323 PSS 1325 >gi|149408146 TOX high mobility group box family member 2 isoform b [Homo sapiens] Length = 488 Score = 34.7 bits (78), Expect = 0.14 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 5/110 (4%) Query: 243 FGDDDVFIACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASP---TPQKTSAKSPG 299 FGD +A + Q S D+ E + + NP A P P P S +P Sbjct: 282 FGDVSKIVASMWDSLGEEQKQSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLTPS 341 Query: 300 PMRRSKSPADSAN--GTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLP 347 ++ +S A A+ T S+ P SP P+ P S H+ L LP Sbjct: 342 DLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQLSLP 391 >gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] Length = 1013 Score = 34.7 bits (78), Expect = 0.14 Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 278 PSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTP 332 P AT G +P ++ S S S + SA+ +SSS S+P P S+P Sbjct: 68 PPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSP 122 Score = 30.8 bits (68), Expect = 2.0 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 288 PTPQKTSAKSPGP----MRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKD 343 P P T +P P S S + S++ +SSS S+ S S P SP + + Sbjct: 66 PLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRV 125 Query: 344 LYLP 347 L LP Sbjct: 126 LELP 129 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.129 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,078,659 Number of Sequences: 37866 Number of extensions: 662559 Number of successful extensions: 5238 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 207 Number of HSP's that attempted gapping in prelim test: 4202 Number of HSP's gapped (non-prelim): 1123 length of query: 360 length of database: 18,247,518 effective HSP length: 103 effective length of query: 257 effective length of database: 14,347,320 effective search space: 3687261240 effective search space used: 3687261240 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.