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Search of human proteins with 28875782
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo
sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo s... 981 0.0
gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo ... 974 0.0
gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo ... 969 0.0
gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo sapi... 296 4e-80
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 45 2e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.039
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.039
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.039
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.039
gi|210032580 SET domain containing 1B [Homo sapiens] 37 0.039
gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens] 37 0.039
gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens] 37 0.039
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 37 0.051
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 37 0.051
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 36 0.066
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 36 0.087
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 36 0.087
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.087
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.087
gi|4504487 histidine rich calcium binding protein precursor [Hom... 36 0.087
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.11
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.11
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.11
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 35 0.11
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.15
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 35 0.15
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 35 0.19
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 35 0.19
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 35 0.19
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 35 0.19
>gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo
sapiens]
Length = 473
Score = 981 bits (2536), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
Query: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET
Sbjct: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
Query: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNT 180
GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNT
Sbjct: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNT 180
Query: 181 KDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPH 240
KDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPH
Sbjct: 181 KDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPH 240
Query: 241 ESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSE 300
ESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSE
Sbjct: 241 ESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSE 300
Query: 301 FLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNAS 360
FLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNAS
Sbjct: 301 FLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNAS 360
Query: 361 VISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISE 420
VISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISE
Sbjct: 361 VISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISE 420
Query: 421 QLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 473
QLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV
Sbjct: 421 QLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 473
>gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo
sapiens]
Length = 480
Score = 974 bits (2518), Expect = 0.0
Identities = 473/480 (98%), Positives = 473/480 (98%), Gaps = 7/480 (1%)
Query: 1 MAQHDFAPAWLNFPTPPSSTK-------SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 53
MAQHDFAPAWLNFPTPPSSTK SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
Query: 54 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 113
DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN
Sbjct: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
Query: 114 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 173
NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML
Sbjct: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 180
Query: 174 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 233
VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK
Sbjct: 181 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 240
Query: 234 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 293
VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM
Sbjct: 241 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 300
Query: 294 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 353
RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP
Sbjct: 301 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 360
Query: 354 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 413
QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR
Sbjct: 361 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 420
Query: 414 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 473
EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV
Sbjct: 421 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 480
>gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo
sapiens]
Length = 493
Score = 969 bits (2505), Expect = 0.0
Identities = 473/493 (95%), Positives = 473/493 (95%), Gaps = 20/493 (4%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
Query: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET
Sbjct: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
Query: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW--------------------E 160
GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW E
Sbjct: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLE 180
Query: 161 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 220
YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT
Sbjct: 181 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 240
Query: 221 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 280
KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK
Sbjct: 241 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 300
Query: 281 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 340
LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE
Sbjct: 301 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 360
Query: 341 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 400
RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN
Sbjct: 361 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 420
Query: 401 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 460
DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT
Sbjct: 421 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 480
Query: 461 ETSSSDTSDDDDV 473
ETSSSDTSDDDDV
Sbjct: 481 ETSSSDTSDDDDV 493
>gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo
sapiens]
Length = 474
Score = 296 bits (757), Expect = 4e-80
Identities = 203/502 (40%), Positives = 263/502 (52%), Gaps = 62/502 (12%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF------- 53
MAQHDF PAWLNF TP S+ + FEKH E+ E R+ V+RRRHNSSDGF
Sbjct: 1 MAQHDFVPAWLNFSTPQSAKSPTATFEKHGEHLPRGEGRFGVSRRRHNSSDGFFNNGPLR 60
Query: 54 --------------DSAIGRPNGGNFGRKEKN--GWRTHGRNGTENINHRGGYHGGSSRS 97
DS + G + N GW + R G + ++ R G G+ R
Sbjct: 61 TAGDSWHQPSLFRHDSVDSGVSKGAYAGITGNPSGWHSSSR-GHDGMSQRSGGGTGNHRH 119
Query: 98 RSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEY--EREPNHNKSLA 155
+ FH+ K E + +KEDK E+ QFE EDFPSLNPE + +P
Sbjct: 120 WNGSFHSRKGCAFQEKPPMEIREEKKEDKVEKLQFEEEDFPSLNPEAGKQHQPCRPIGTP 179
Query: 156 AGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTG-----PSVYKG 210
+GVWE PP+ K + +MLVIKK + +D + F P NG PSVYK
Sbjct: 180 SGVWENPPSAKQPS-KMLVIKKVSKED-PAAAFSAAFTSPGSHHANGNKLSSVVPSVYKN 237
Query: 211 LVPKPAAPPTKPTQWKSQTKENKVGT-SFPHESTFGVGNFNAFKSTAKNFSPSTNSVKEC 269
LVPKP PP+KP WK+ E+K G+ S ES F + K + +S KE
Sbjct: 238 LVPKPVPPPSKPNAWKANRMEHKSGSLSSSRESAF-TSPISVTKPVVLASGAALSSPKE- 295
Query: 270 NRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSF 329
+ S+++ P++ + RLTKLTR TD+KSEFLK LK DR + E+ +D D
Sbjct: 296 SPSSTTPPIEISSS--RLTKLTRRTTDRKSEFLKTLKDDRNGDFSEN-------RDCDKL 346
Query: 330 NLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLL 389
NST + P+ENG Q + + +VLS SLEAEHRLL
Sbjct: 347 EDLEDNSTPE-------------PKENGEEGC-HQNGLALPVVEEGEVLSHSLEAEHRLL 392
Query: 390 KEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNS 449
K MGWQE ENDE C PLTEDE++EF + +EQL++NG KNG L++ F PW+ S
Sbjct: 393 KAMGWQEYPENDENCLPLTEDELKEFHMKTEQLRRNGFGKNGFLQSR--SSSLFSPWR-S 449
Query: 450 TFKPTTENDDTETSSSDTSDDD 471
T K E+ DTETSSS+TSDDD
Sbjct: 450 TCKAEFEDSDTETSSSETSDDD 471
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 44.7 bits (104), Expect = 2e-04
Identities = 76/347 (21%), Positives = 125/347 (36%), Gaps = 59/347 (17%)
Query: 14 PTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRPNGGNFGRKEKNGW 73
P+ S+KSS K S +R R + S S + K+
Sbjct: 462 PSDIESSKSSTRRMKSS-----------CDRERSSRSSSLSSHHSSKRDWSKSDKDVQSS 510
Query: 74 RTHG-RNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQF 132
TH R+ + +H Y GSSRSR+ A KS H + + + K R+R
Sbjct: 511 LTHSSRDSYRSKSHSQSYSRGSSRSRT----ASKSSS-HSRSRSKSRSSSKSGHRKRASK 565
Query: 133 EAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVG 192
S + + NK P P + + +Q PVV
Sbjct: 566 SPRKTAS-------QLSENK------------PVKTEPLRATMAQNENVVVQ----PVVA 602
Query: 193 -NLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 251
N+P P+ + PS +K P P KP+ + Q + K P +ST+ + N
Sbjct: 603 ENIPVIPLSDSPPPSRWK-----PGQKPWKPSYERIQEMKAKTTHLLPIQSTYSLANIKE 657
Query: 252 FKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQ-QPRLTKLTRMRTDKKSEFLKALKRDRV 310
S++ NS E ++S S D+ ++ PR +R R+ + + ++ R R
Sbjct: 658 TGSSSSYHKREKNS--ESDQSTYSKYSDRSSESSPR----SRSRSSRSRSYSRSYTRSRS 711
Query: 311 EEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENG 357
SR+ S + H+ N +R+ I ++G
Sbjct: 712 LASSHSRSRSPSSRS------HSRNKYSDHSQCSRSSSYTSISSDDG 752
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.039
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 192 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 251
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 252 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 298
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 299 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 328
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.039
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 192 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 251
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 252 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 298
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 299 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 328
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.039
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 192 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 251
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 252 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 298
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 299 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 328
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.039
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 192 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 251
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 252 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 298
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 299 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 328
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 37.0 bits (84), Expect = 0.039
Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 257 KNFSPSTN-------SVKECNRSNSSSPVDKLNQQPRLTKLTRM-----------RTDKK 298
K PST+ S +E +R + +P + + P+ + R D+K
Sbjct: 979 KRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLELDSGGEEDEK 1038
Query: 299 SEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGN 358
+ + EEE E+E + DDDS + S + ++ ++ +++E G+
Sbjct: 1039 ESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDE-----GD 1093
Query: 359 ASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVI 418
+ I +S T SS +E E + +E A E+E E +++
Sbjct: 1094 SDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMV 1153
Query: 419 SEQ 421
+E+
Sbjct: 1154 AEE 1156
>gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]
Length = 247
Score = 37.0 bits (84), Expect = 0.039
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 272 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 331
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 38 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 97
Query: 332 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 391
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 98 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 142
Query: 392 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 444
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 143 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 193
Query: 445 PWKNSTFKPTTENDDTETSSSDTSDDDD 472
+ +N+D+E S D DDDD
Sbjct: 194 --------DSDDNEDSEESEIDMEDDDD 213
>gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]
Length = 413
Score = 37.0 bits (84), Expect = 0.039
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 272 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 331
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 204 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 263
Query: 332 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 391
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 264 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 308
Query: 392 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 444
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 309 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 359
Query: 445 PWKNSTFKPTTENDDTETSSSDTSDDDD 472
+ +N+D+E S D DDDD
Sbjct: 360 --------DSDDNEDSEESEIDMEDDDD 379
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 36.6 bits (83), Expect = 0.051
Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 74/309 (23%)
Query: 66 GRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKED 125
G KE+ + E GGS + SS E + E G E
Sbjct: 525 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS-----------EKEEGEQEEGETEA 573
Query: 126 KRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQL 185
+ E ++ EA++ + + E + +A E P KS P+ V +KG +
Sbjct: 574 EAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP---- 629
Query: 186 SGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---------PTKPTQWKSQTKENKVGT 236
+P PV+ KG P P +P P P + K ++ +K
Sbjct: 630 --------VPKSPVEE-------KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV 674
Query: 237 SFPHESTFGVGNFNAFKSTAK--NFSPSTNSVKECNRSNSSSPVDKLNQQPR-------- 286
+S KS A+ KE + V+K ++P+
Sbjct: 675 EEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKA 734
Query: 287 --------------LTKLTRMRTDKKS-EFLKALKRDRV----------EEEHEDESRAG 321
+TK ++ +K++ E K L++++ EEE D+ G
Sbjct: 735 ESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKG 794
Query: 322 SEKDDDSFN 330
S K+D + N
Sbjct: 795 SRKEDIAVN 803
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 36.6 bits (83), Expect = 0.051
Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 74/309 (23%)
Query: 66 GRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKED 125
G KE+ + E GGS + SS E + E G E
Sbjct: 149 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS-----------EKEEGEQEEGETEA 197
Query: 126 KRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQL 185
+ E ++ EA++ + + E + +A E P KS P+ V +KG +
Sbjct: 198 EAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP---- 253
Query: 186 SGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---------PTKPTQWKSQTKENKVGT 236
+P PV+ KG P P +P P P + K ++ +K
Sbjct: 254 --------VPKSPVEE-------KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV 298
Query: 237 SFPHESTFGVGNFNAFKSTAK--NFSPSTNSVKECNRSNSSSPVDKLNQQPR-------- 286
+S KS A+ KE + V+K ++P+
Sbjct: 299 EEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKA 358
Query: 287 --------------LTKLTRMRTDKKS-EFLKALKRDRV----------EEEHEDESRAG 321
+TK ++ +K++ E K L++++ EEE D+ G
Sbjct: 359 ESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKG 418
Query: 322 SEKDDDSFN 330
S K+D + N
Sbjct: 419 SRKEDIAVN 427
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 36.2 bits (82), Expect = 0.066
Identities = 51/184 (27%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 49 SSDGFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAG--- 105
SS +S + P GG+ GR +G T + T +I G G S R
Sbjct: 444 SSTASNSVVPPPQGGS-GRGSPSGGSTAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPR 502
Query: 106 KSQGLHENN--IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPP 163
++ LH+ +PD G K ERKQ P+ R P S AG PP
Sbjct: 503 RTHSLHQRGLAVPDGPLGLPP-KPERKQ---------QPQLPRPPTTGGSEGAGAAPCPP 552
Query: 164 NP-KSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---- 218
NP S P + G ++ S + ++GT KGL PA+P
Sbjct: 553 NPANSWVPG---LSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQ 609
Query: 219 PTKP 222
P KP
Sbjct: 610 PPKP 613
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 35.8 bits (81), Expect = 0.087
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 306 KRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQ 365
+R+R ++ + E G EKD+D F S + + + + + N + E +S
Sbjct: 497 RRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSL 556
Query: 366 I-IRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQK 424
+ IR S F +SL + K++G + D +DE + R+ + ++
Sbjct: 557 LSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVP---RR 613
Query: 425 NGLRKNGIL 433
+G R+N L
Sbjct: 614 HGERRNSNL 622
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 35.8 bits (81), Expect = 0.087
Identities = 62/277 (22%), Positives = 109/277 (39%), Gaps = 43/277 (15%)
Query: 94 SSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAE---DFPSLNPEYEREPNH 150
SS S SS + S + +++ +D RE K E D + E ++P
Sbjct: 179 SSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKE 238
Query: 151 NKSL-----AAGVWEYPPNPKSRAPR----MLVIKKGNTKDLQLSGFPVVGN--LPSQPV 199
NK L + P P S+ P+ +L I G K P+ + L ++
Sbjct: 239 NKPLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKR 298
Query: 200 KNGTGPSVYKGLVPKP-----AAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKS 254
K + +++K P + K + KS K KV E++ KS
Sbjct: 299 KKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKV--KIESETS------EKKKS 350
Query: 255 TAKNFS----PSTNSVKE--CNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRD 308
T F P+ + V+E ++S+S P + + T +T ++ L+++ +D
Sbjct: 351 TLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGP-LRSIMKD 409
Query: 309 RVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINR 345
+++E+ES E +D N N + ER +NR
Sbjct: 410 LHSDDNEEES---DEVED------NDNDSEMERPVNR 437
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 35.8 bits (81), Expect = 0.087
Identities = 47/181 (25%), Positives = 58/181 (32%), Gaps = 33/181 (18%)
Query: 58 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 114
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 519 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 575
Query: 115 IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRM-- 172
DN R + + P P + P + PP P S +P
Sbjct: 576 NRDNNNSNNRGSYNRAP-QQQPPPQQPPPPQPPP-----------QQPPPPPSYSPARNP 623
Query: 173 -----------LVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTK 221
+ NT +S + SQP N G S +G P PP
Sbjct: 624 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYS--QGYTAPPPPPPPP 681
Query: 222 P 222
P
Sbjct: 682 P 682
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 35.8 bits (81), Expect = 0.087
Identities = 47/181 (25%), Positives = 58/181 (32%), Gaps = 33/181 (18%)
Query: 58 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 114
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 619 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 675
Query: 115 IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRM-- 172
DN R + + P P + P + PP P S +P
Sbjct: 676 NRDNNNSNNRGSYNRAP-QQQPPPQQPPPPQPPP-----------QQPPPPPSYSPARNP 723
Query: 173 -----------LVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTK 221
+ NT +S + SQP N G S +G P PP
Sbjct: 724 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYS--QGYTAPPPPPPPP 781
Query: 222 P 222
P
Sbjct: 782 P 782
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.8 bits (81), Expect = 0.087
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 305 LKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQ-ERDINRNFDENEIPQENGNASVIS 363
L++D EEE E E GS ++DD + TH RD E+E +E G+ ++
Sbjct: 477 LRKDDSEEEKEKEEDPGSHEEDDESSEQGEKGTHHGSRD-----QEDEEDEEEGHGLSLN 531
Query: 364 QQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQED----SENDETCAPLTEDEMREFQVIS 419
Q+ E E +E +ED E E APL+ D E +
Sbjct: 532 QE-----------------EEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEE 574
Query: 420 EQLQKN 425
E L+++
Sbjct: 575 EGLEED 580
Score = 30.0 bits (66), Expect = 4.8
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 374 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 433
+ +V+SS E H +L+ D E+DE E+E E Q + R +G
Sbjct: 165 EDEVVSS--EHHHHILRHGHRGHDGEDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSE 222
Query: 434 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 473
++ + D + + E+DD + D DDDDV
Sbjct: 223 EDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDDDV 262
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 152 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 201
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 202 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 245
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 152 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 201
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 202 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 245
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 152 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 201
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 202 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 245
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 35.4 bits (80), Expect = 0.11
Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 22/277 (7%)
Query: 96 RSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLA 155
+SRS + GKS+ + + ++ R E +E+K ++ + + + R P+ +
Sbjct: 291 KSRSPVDLRGKSKDRRSRS-KERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRS 349
Query: 156 AGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKP 215
P P+ ++ R S P++ + S+ K+ PS + L P
Sbjct: 350 PKRRSLSPKPRDKSRR--------------SRSPLLNDRRSKQSKS---PS--RTLSPGR 390
Query: 216 AAPPTKPTQWKSQTKENKVGT--SFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 273
A + + + + ++ + + P + + S +SP+ + R
Sbjct: 391 RAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKDASPINRWSPTRRRSRSPIRRR 450
Query: 274 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 333
S SP+ + R ++ R R + + +R R SR+ ++D +L
Sbjct: 451 SRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSE 510
Query: 334 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSS 370
QE + N ++ ++ +E+ A + ++I R +
Sbjct: 511 GMKVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQA 547
Score = 34.7 bits (78), Expect = 0.19
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 223 TQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLN 282
T+ +S K++K G E T + K K+ SPS S + S SP +
Sbjct: 192 TRHRSDKKKSKGGIEIVKEKT----TRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRR 247
Query: 283 QQPRLTKLTRMRTDKKSEFLKALKRDRVEEE--HEDESRAGSEKDDDSFNLHNSNSTHQE 340
Q ++ K DK K+ +DR + +E SR +K +L + +
Sbjct: 248 SQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRS 307
Query: 341 RDINRNFDENEIPQE 355
R R +E +E
Sbjct: 308 RSKERKSKRSETDKE 322
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.15
Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 209 KGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKE 268
KG P P PP + + + T ++ ++ + + G+ +A ++ + S S+ S K+
Sbjct: 269 KGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFSDKK 328
Query: 269 CNRSNSSSPVDKL--NQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDD 326
+ SS+ +K+ +PR K + SE + K + + + S + D
Sbjct: 329 PAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSD 388
Query: 327 DSFNLHNSNSTHQERDINRNFDENEIPQENGNA 359
F ++S R + + E +++ ++
Sbjct: 389 SDFEPSQNHSQGPLRSMVEDLQSEESDEDDSSS 421
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 35.0 bits (79), Expect = 0.15
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 67 RKEKNGWRTHGRNGTENINHRGGY--HGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKE 124
++E WR + R N +R Y G S+SRS +S+ D + R
Sbjct: 137 KREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNV 196
Query: 125 DKRERKQFEAED---FPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAP 170
+ RER +F++E S P PN ++ ++G P AP
Sbjct: 197 EHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAP 245
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 34.7 bits (78), Expect = 0.19
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 218 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 277
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 471 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 530
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 34.7 bits (78), Expect = 0.19
Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 10/219 (4%)
Query: 254 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 313
S + N S S+NS + SNSS D + + R+D + + D
Sbjct: 818 SDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSS 877
Query: 314 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 373
+S +E + S + +SNS+ + + N ++ + ++S S S++
Sbjct: 878 DSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSD 937
Query: 374 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 433
++ SS ++ + DS N + + + S+ + +
Sbjct: 938 SSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDS 997
Query: 434 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDD 472
+ NS+ + + ++SSD+S+ D
Sbjct: 998 SDS----------SNSSDSSDSSDSSDSSNSSDSSNSSD 1026
Score = 33.5 bits (75), Expect = 0.43
Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 1/220 (0%)
Query: 254 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 313
S + + S S+NS + SNSS D N + S+ + D
Sbjct: 771 SDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSS 830
Query: 314 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 373
+S S+ D S + S+S R + N ++ ++ N+S S + +
Sbjct: 831 DSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSN 890
Query: 374 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 433
+D SS ++ + S++ + + S+ + +
Sbjct: 891 SSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDS 950
Query: 434 KNGLICDFKFGPWKNSTFKPTTENDDTETS-SSDTSDDDD 472
N +S + +D +++S SSD+SD D
Sbjct: 951 SNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD 990
Score = 32.7 bits (73), Expect = 0.73
Identities = 83/440 (18%), Positives = 164/440 (37%), Gaps = 41/440 (9%)
Query: 52 GFDSAIGRPNGGNFGRKEKNGWRT----HGRNGTENINHRGGY----HGGSSRSRSSIFH 103
G D++ G P+G E G NG ++ N+ G HG SSI
Sbjct: 238 GLDNSDGSPSGNGADEDEDEGSGDDEDEEAGNGKDSSNNSKGQEGQDHGKEDDHDSSIGQ 297
Query: 104 AGKSQGLHE---NNIPDNET-GRKEDKRERKQFEA-EDFPSLNPEYEREPNHNKSLAAGV 158
S+ ++ P NE G K K E ED S E ++ NH +S
Sbjct: 298 NSDSKEYYDPEGKEDPHNEVDGDKTSKSEENSAGIPEDNGSQRIEDTQKLNHRESKRV-- 355
Query: 159 WEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLP-SQPVKNGTGPSVYKGLVPKPAA 217
N ++ + K K +++ G P GN ++ V G KG
Sbjct: 356 ----ENRITKESETHAVGKSQDKGIEIKG-PSSGNRNITKEVGKGNEGKEDKGQHGMILG 410
Query: 218 PPTKPTQWK-----SQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRS 272
TQ + ++++ G H +T N + + S +F + + N S
Sbjct: 411 KGNVKTQGEVVNIEGPGQKSEPGNKVGHSNTGSDSNSDGYDSY--DFDDKSMQGDDPNSS 468
Query: 273 NSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLH 332
+ S+ D N + +R S+ K ++ + S + +DDDS +
Sbjct: 469 DESNGNDDANSESDNNSSSRGDASYNSDESK---------DNGNGSDSKGAEDDDSDSTS 519
Query: 333 NSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEM 392
++N++ + N D+N+ ++G S S + +D SS +++
Sbjct: 520 DTNNSDSNGNGNNGNDDND-KSDSGKGKSDSSDSDSSDSSNSSDSSDSS-DSDSSDSNSS 577
Query: 393 GWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFK 452
+ S++D + + ++ + + S+ + + + ++ +
Sbjct: 578 SDSDSSDSDSSDS--SDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSD 635
Query: 453 PTTENDDTETSSSDTSDDDD 472
+++D ++++SSD+SD+ D
Sbjct: 636 SDSKSDSSDSNSSDSSDNSD 655
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 34.7 bits (78), Expect = 0.19
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 220 TKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVD 279
+K K + KE K + P ++ + ++ S S + +RS + SP
Sbjct: 308 SKTRDKKKEDKEKKRSKTPP----------KSYSTARRSRSASRERRRRRSRSGTRSP-- 355
Query: 280 KLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDE-----SRAGSEKDDDSFNLHNS 334
++PR K R+ K K+D+ +E DE S+ KD + S
Sbjct: 356 ---KKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKS 412
Query: 335 NSTHQERDINRNFDENE 351
S + + R++DE E
Sbjct: 413 ESDKDVKQVTRDYDEEE 429
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.19
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 218 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 277
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 622 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 681
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,206,472
Number of Sequences: 37866
Number of extensions: 1100182
Number of successful extensions: 4810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 4465
Number of HSP's gapped (non-prelim): 447
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.