Guide to the Human Genome
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Name: CDK5RAP3 Sequence: fasta or formatted (506aa) NCBI GI: 28872792
Description:

CDK5 regulatory subunit associated protein 3

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         39           3
 C cysteine            1.2          6           1
 D aspartate           5.5         28           2
 E glutamate          10.7         54           3
 F phenylalanine       2.4         12           1
 G glycine             5.7         29           2
 H histidine           1.6          8           1
 I isoleucine          5.5         28           2
 K lysine              5.5         28           2
 L leucine            12.8         65           3
 M methionine          2.2         11           1
 N asparagine          1.8          9           1
 P proline             3.4         17           1
 Q glutamine           8.1         41           2
 R arginine            4.2         21           2
 S serine              6.9         35           2
 T threonine           4.3         22           1
 V valine              6.3         32           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDK5 regulatory subunit associated protein 3 
CALCOCO2              0.016   calcium binding and coiled-coil domain 2 
ENOX1                 0.013   ecto-NOX disulfide-thiol exchanger 1 
ENOX1                 0.013   ecto-NOX disulfide-thiol exchanger 1 
TPM1                  0.012   tropomyosin 1 alpha chain isoform 6 
TPM1                  0.010   tropomyosin 1 alpha chain isoform 2 
TPM1                  0.010   tropomyosin 1 alpha chain isoform 3 
KIAA1026              0.010   kazrin isoform E 
KIAA1026              0.010   kazrin isoform C 
KIAA1026              0.010   kazrin isoform B 
KIAA1026              0.010   kazrin isoform C 
KIAA1026              0.010   kazrin isoform A 
MYH6                  0.010   myosin heavy chain 6 
ZNF853                0.010   zinc finger protein 853 
JAKMIP1               0.010   janus kinase and microtubule interacting protein 1 i...
JAKMIP1               0.010   janus kinase and microtubule interacting protein 1 ...
SKIL                  0.009   SKI-like isoform 3 
SKIL                  0.009   SKI-like isoform 2 
SKIL                  0.009   SKI-like isoform 1 
CENPE                 0.009   centromere protein E 
CENPF                 0.009   centromere protein F 
MYH14                 0.008   myosin, heavy chain 14 isoform 1 
MYH14                 0.008   myosin, heavy chain 14 isoform 2 
MYH14                 0.008   myosin, heavy chain 14 isoform 3 
KRT80                 0.008   keratin 80 isoform a 
KRT80                 0.008   keratin 80 isoform b 
TPM1                  0.008   tropomyosin 1 alpha chain isoform 1 
NINL                  0.008   ninein-like 
AKAP9                 0.008   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.008   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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