Guide to the Human Genome
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Name: DNMT3L Sequence: fasta or formatted (387aa) NCBI GI: 28872778
Description:

cytosine-5-methyltransferase 3-like protein isoform 1

Referenced in:

DNA Methylation

Other entries for this name:
alt prot [386aa] cytosine-5-methyltransferase 3-like protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         19           2
 C cysteine            4.4         17           2
 D aspartate           5.9         23           3
 E glutamate           6.5         25           3
 F phenylalanine       4.7         18           2
 G glycine             5.7         22           2
 H histidine           2.1          8           1
 I isoleucine          3.4         13           1
 K lysine              4.7         18           2
 L leucine            11.4         44           2
 M methionine          1.6          6           1
 N asparagine          2.8         11           1
 P proline             7.0         27           2
 Q glutamine           3.4         13           1
 R arginine            5.7         22           3
 S serine              9.6         37           3
 T threonine           3.9         15           1
 V valine              7.2         28           2
 W tryptophan          2.3          9           1
 Y tyrosine            3.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytosine-5-methyltransferase 3-like protein isoform ... 
DNMT3L                0.992   cytosine-5-methyltransferase 3-like protein isoform ...
DNMT3B                0.306   DNA cytosine-5 methyltransferase 3 beta isoform 3 [H...
DNMT3A                0.290   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.290   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.290   DNA cytosine methyltransferase 3 alpha isoform b [Ho...
DNMT3B                0.288   DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...
DNMT3B                0.288   DNA cytosine-5 methyltransferase 3 beta isoform 2 [H...
DNMT3B                0.288   DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho...
ATRX                  0.028   transcriptional regulator ATRX isoform 2 
ATRX                  0.028   transcriptional regulator ATRX isoform 1 
CHD5                  0.014   chromodomain helicase DNA binding protein 5 
PHF21A                0.014   BRAF35/HDAC2 complex isoform a 
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.011   chromodomain helicase DNA binding protein 3 isoform...
CHD4                  0.011   chromodomain helicase DNA binding protein 4 
PHF21A                0.010   BRAF35/HDAC2 complex isoform b 
TRIM33                0.006   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.006   tripartite motif-containing 33 protein isoform alpha...
OAS2                  0.006   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.006   2'-5'-oligoadenylate synthetase 2 isoform 1 
GON4L                 0.006   gon-4-like isoform a 
GON4L                 0.006   gon-4-like isoform b 
TRIM24                0.006   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.006   transcriptional intermediary factor 1 alpha isoform ...
WHSC1L1               0.006   WHSC1L1 protein isoform long 
AKAP9                 0.005   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.005   A-kinase anchor protein 9 isoform 3 
TRIM66                0.005   tripartite motif-containing 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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