Search of human proteins with 28559063

Search of human proteins with 28559063

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3
[Homo sapiens]
         (770 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [H...  1601   0.0  
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...  1504   0.0  
gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [H...  1504   0.0  
gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho...  1492   0.0  
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho...   650   0.0  
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho...   650   0.0  
gi|77176455 DNA cytosine methyltransferase 3 alpha isoform b [Ho...   650   0.0  
gi|28872780 cytosine-5-methyltransferase 3-like protein isoform ...   268   1e-71
gi|28872778 cytosine-5-methyltransferase 3-like protein isoform ...   265   1e-70
gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]         62   2e-09
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    57   6e-08
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    57   8e-08
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]        54   5e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         48   4e-05
gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform...    42   0.002
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform...    42   0.002
gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform ...    42   0.002
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform...    42   0.002
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform...    42   0.002
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor...    42   0.002
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]                41   0.005
gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]               41   0.005
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    40   0.008
gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens]         39   0.014
gi|4504191 mutS homolog 6 [Homo sapiens]                               39   0.018
gi|51173722 bromodomain and PHD finger-containing protein 1 isof...    39   0.024
gi|51173720 bromodomain and PHD finger-containing protein 1 isof...    39   0.024
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]    38   0.031
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    38   0.031
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]         37   0.053

>gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [Homo
           sapiens]
          Length = 770

 Score = 1601 bits (4145), Expect = 0.0
 Identities = 770/770 (100%), Positives = 770/770 (100%)

Query: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60
           MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV
Sbjct: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60

Query: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120
           SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS
Sbjct: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120

Query: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180
           PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT
Sbjct: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180

Query: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240
           PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP
Sbjct: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240

Query: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300
           AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK
Sbjct: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300

Query: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 360
           AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR
Sbjct: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 360

Query: 361 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 420
           RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR
Sbjct: 361 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 420

Query: 421 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 480
           KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC
Sbjct: 421 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 480

Query: 481 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 540
           VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA
Sbjct: 481 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 540

Query: 541 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 600
           PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG
Sbjct: 541 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 600

Query: 601 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 660
           NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN
Sbjct: 601 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 660

Query: 661 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 720
           YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP
Sbjct: 661 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 720

Query: 721 GMNRIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIRHLFAPLKDYFACE 770
           GMNRIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIRHLFAPLKDYFACE
Sbjct: 721 GMNRIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIRHLFAPLKDYFACE 770


>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
           sapiens]
          Length = 845

 Score = 1504 bits (3894), Expect = 0.0
 Identities = 724/724 (100%), Positives = 724/724 (100%)

Query: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60
           MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV
Sbjct: 13  MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 72

Query: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120
           SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS
Sbjct: 73  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 132

Query: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180
           PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT
Sbjct: 133 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 192

Query: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240
           PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP
Sbjct: 193 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 252

Query: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300
           AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK
Sbjct: 253 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 312

Query: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 360
           AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR
Sbjct: 313 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 372

Query: 361 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 420
           RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR
Sbjct: 373 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 432

Query: 421 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 480
           KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC
Sbjct: 433 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 492

Query: 481 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 540
           VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA
Sbjct: 493 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 552

Query: 541 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 600
           PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG
Sbjct: 553 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 612

Query: 601 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 660
           NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN
Sbjct: 613 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 672

Query: 661 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 720
           YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP
Sbjct: 673 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 732

Query: 721 GMNR 724
           GMNR
Sbjct: 733 GMNR 736


>gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [Homo
           sapiens]
          Length = 833

 Score = 1504 bits (3894), Expect = 0.0
 Identities = 724/724 (100%), Positives = 724/724 (100%)

Query: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60
           MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV
Sbjct: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60

Query: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120
           SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS
Sbjct: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120

Query: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180
           PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT
Sbjct: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180

Query: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240
           PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP
Sbjct: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240

Query: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300
           AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK
Sbjct: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300

Query: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 360
           AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR
Sbjct: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTR 360

Query: 361 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 420
           RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR
Sbjct: 361 RRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGR 420

Query: 421 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 480
           KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC
Sbjct: 421 KNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFC 480

Query: 481 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 540
           VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA
Sbjct: 481 VECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEA 540

Query: 541 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 600
           PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG
Sbjct: 541 PKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEG 600

Query: 601 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 660
           NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN
Sbjct: 601 NIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLN 660

Query: 661 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 720
           YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP
Sbjct: 661 YSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLP 720

Query: 721 GMNR 724
           GMNR
Sbjct: 721 GMNR 724


>gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Homo
           sapiens]
          Length = 853

 Score = 1492 bits (3863), Expect = 0.0
 Identities = 724/744 (97%), Positives = 724/744 (97%), Gaps = 20/744 (2%)

Query: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60
           MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV
Sbjct: 1   MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV 60

Query: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120
           SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS
Sbjct: 61  SSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS 120

Query: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180
           PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT
Sbjct: 121 PRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT 180

Query: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240
           PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP
Sbjct: 181 PQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP 240

Query: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300
           AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK
Sbjct: 241 AMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK 300

Query: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQP----- 355
           AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQP     
Sbjct: 301 AMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPVVNKS 360

Query: 356 ---------------ENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQM 400
                          ENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQM
Sbjct: 361 KVRRAGSRKLESRKYENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQM 420

Query: 401 ASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTV 460
           ASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTV
Sbjct: 421 ASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTV 480

Query: 461 CCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRK 520
           CCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRK
Sbjct: 481 CCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRK 540

Query: 521 DWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGK 580
           DWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGK
Sbjct: 541 DWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGK 600

Query: 581 YVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPA 640
           YVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPA
Sbjct: 601 YVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPA 660

Query: 641 RKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVM 700
           RKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVM
Sbjct: 661 RKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVM 720

Query: 701 IDAIKVSAAHRARYFWGNLPGMNR 724
           IDAIKVSAAHRARYFWGNLPGMNR
Sbjct: 721 IDAIKVSAAHRARYFWGNLPGMNR 744


>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
           sapiens]
          Length = 912

 Score =  650 bits (1678), Expect = 0.0
 Identities = 311/539 (57%), Positives = 390/539 (72%), Gaps = 14/539 (2%)

Query: 199 GMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGM 258
           G ++    A     D  EY+DG+ FGIG+LVWGK++GFSWWP  +VSW  T + +A  G 
Sbjct: 266 GSDAGDKNATKAGDDEPEYEDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGT 325

Query: 259 RWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFP 318
           RWV WFGDGKFS V  +KL+ L  F   F+ AT+NK   YRKA+Y  L+ A  RAGK FP
Sbjct: 326 RWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQATYNKQPMYRKAIYEVLQVASSRAGKLFP 385

Query: 319 -------SSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTRRRTAD---DSA 368
                  S    ++E Q KPM+EWA GGF+P+G +GL+P   + +N  +    D   +  
Sbjct: 386 VCHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEE-KNPYKEVYTDMWVEPE 444

Query: 369 TSDYCPAPKRLKTNCYNNGKDRGDE---DQSREQMASDVANNKSSLEDGCLSCGRKNPVS 425
            + Y P P   K       K +  E   +++RE++  +V     ++ED C+SCG  N   
Sbjct: 445 AAAYAPPPPAKKPRKSTAEKPKVKEIIDERTRERLVYEVRQKCRNIEDICISCGSLNVTL 504

Query: 426 FHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLE 485
            HPLF GG+CQ C++ FLE  Y YDDDGYQSYCT+CC GRE+L+C N +CCRCFCVEC++
Sbjct: 505 EHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVD 564

Query: 486 VLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEAPKLYP 545
           +LVG G A  A  ++PW+CYMC  +  +G+LRRR+DW  RLQ FF ++   E++ PK+YP
Sbjct: 565 LLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFANNHDQEFDPPKVYP 624

Query: 546 AIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEGNIKYV 605
            +PA +R+PIRVLSLFDGIATG LVLK+LGI+V +Y+ASEVCE+SI VG V+H+G I YV
Sbjct: 625 PVPAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYV 684

Query: 606 NDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPK 665
            DVR++T+K+I+EWGPFDLVIGGSPCNDLS VNPARKGLYEGTGRLFFEFY LL+ +RPK
Sbjct: 685 GDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK 744

Query: 666 EGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLPGMNR 724
           EGDDRPFFW+FENVVAM V DKRDISRFLE NPVMIDA +VSAAHRARYFWGNLPGMNR
Sbjct: 745 EGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNR 803


>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
           sapiens]
          Length = 912

 Score =  650 bits (1678), Expect = 0.0
 Identities = 311/539 (57%), Positives = 390/539 (72%), Gaps = 14/539 (2%)

Query: 199 GMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGM 258
           G ++    A     D  EY+DG+ FGIG+LVWGK++GFSWWP  +VSW  T + +A  G 
Sbjct: 266 GSDAGDKNATKAGDDEPEYEDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGT 325

Query: 259 RWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFP 318
           RWV WFGDGKFS V  +KL+ L  F   F+ AT+NK   YRKA+Y  L+ A  RAGK FP
Sbjct: 326 RWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQATYNKQPMYRKAIYEVLQVASSRAGKLFP 385

Query: 319 -------SSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTRRRTAD---DSA 368
                  S    ++E Q KPM+EWA GGF+P+G +GL+P   + +N  +    D   +  
Sbjct: 386 VCHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEE-KNPYKEVYTDMWVEPE 444

Query: 369 TSDYCPAPKRLKTNCYNNGKDRGDE---DQSREQMASDVANNKSSLEDGCLSCGRKNPVS 425
            + Y P P   K       K +  E   +++RE++  +V     ++ED C+SCG  N   
Sbjct: 445 AAAYAPPPPAKKPRKSTAEKPKVKEIIDERTRERLVYEVRQKCRNIEDICISCGSLNVTL 504

Query: 426 FHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLE 485
            HPLF GG+CQ C++ FLE  Y YDDDGYQSYCT+CC GRE+L+C N +CCRCFCVEC++
Sbjct: 505 EHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVD 564

Query: 486 VLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEAPKLYP 545
           +LVG G A  A  ++PW+CYMC  +  +G+LRRR+DW  RLQ FF ++   E++ PK+YP
Sbjct: 565 LLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFANNHDQEFDPPKVYP 624

Query: 546 AIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEGNIKYV 605
            +PA +R+PIRVLSLFDGIATG LVLK+LGI+V +Y+ASEVCE+SI VG V+H+G I YV
Sbjct: 625 PVPAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYV 684

Query: 606 NDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPK 665
            DVR++T+K+I+EWGPFDLVIGGSPCNDLS VNPARKGLYEGTGRLFFEFY LL+ +RPK
Sbjct: 685 GDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK 744

Query: 666 EGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLPGMNR 724
           EGDDRPFFW+FENVVAM V DKRDISRFLE NPVMIDA +VSAAHRARYFWGNLPGMNR
Sbjct: 745 EGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNR 803


>gi|77176455 DNA cytosine methyltransferase 3 alpha isoform b [Homo
           sapiens]
          Length = 723

 Score =  650 bits (1678), Expect = 0.0
 Identities = 311/539 (57%), Positives = 390/539 (72%), Gaps = 14/539 (2%)

Query: 199 GMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGM 258
           G ++    A     D  EY+DG+ FGIG+LVWGK++GFSWWP  +VSW  T + +A  G 
Sbjct: 77  GSDAGDKNATKAGDDEPEYEDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGT 136

Query: 259 RWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFP 318
           RWV WFGDGKFS V  +KL+ L  F   F+ AT+NK   YRKA+Y  L+ A  RAGK FP
Sbjct: 137 RWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQATYNKQPMYRKAIYEVLQVASSRAGKLFP 196

Query: 319 -------SSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPENKTRRRTAD---DSA 368
                  S    ++E Q KPM+EWA GGF+P+G +GL+P   + +N  +    D   +  
Sbjct: 197 VCHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEE-KNPYKEVYTDMWVEPE 255

Query: 369 TSDYCPAPKRLKTNCYNNGKDRGDE---DQSREQMASDVANNKSSLEDGCLSCGRKNPVS 425
            + Y P P   K       K +  E   +++RE++  +V     ++ED C+SCG  N   
Sbjct: 256 AAAYAPPPPAKKPRKSTAEKPKVKEIIDERTRERLVYEVRQKCRNIEDICISCGSLNVTL 315

Query: 426 FHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLE 485
            HPLF GG+CQ C++ FLE  Y YDDDGYQSYCT+CC GRE+L+C N +CCRCFCVEC++
Sbjct: 316 EHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVD 375

Query: 486 VLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEAPKLYP 545
           +LVG G A  A  ++PW+CYMC  +  +G+LRRR+DW  RLQ FF ++   E++ PK+YP
Sbjct: 376 LLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFANNHDQEFDPPKVYP 435

Query: 546 AIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEGNIKYV 605
            +PA +R+PIRVLSLFDGIATG LVLK+LGI+V +Y+ASEVCE+SI VG V+H+G I YV
Sbjct: 436 PVPAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYV 495

Query: 606 NDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPK 665
            DVR++T+K+I+EWGPFDLVIGGSPCNDLS VNPARKGLYEGTGRLFFEFY LL+ +RPK
Sbjct: 496 GDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK 555

Query: 666 EGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLPGMNR 724
           EGDDRPFFW+FENVVAM V DKRDISRFLE NPVMIDA +VSAAHRARYFWGNLPGMNR
Sbjct: 556 EGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNR 614


>gi|28872780 cytosine-5-methyltransferase 3-like protein isoform 2
           [Homo sapiens]
          Length = 386

 Score =  268 bits (685), Expect = 1e-71
 Identities = 136/372 (36%), Positives = 202/372 (54%), Gaps = 32/372 (8%)

Query: 397 REQMASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQS 456
           R+ +A +V  N+ ++ED C+ CG     + HPLFEGG+C  C+D+FL+  ++YDDDGYQS
Sbjct: 35  RDLIAYEVKANQRNIEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQS 94

Query: 457 YCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVL 516
           YC++CC G  LL+C N  C RC+C EC++ LVG GT+ +      W CY+CLP    G+L
Sbjct: 95  YCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLL 154

Query: 517 RRRKDWNVRLQAFFTSDTGLEYEAP-KLYPAIPAARRRPIRVLSLFDGIATGYLVLKELG 575
           +RR+ W  +L+AF+      E E P +++  +P  RR+P+RVLSLF+ I      L  LG
Sbjct: 155 QRRRKWRSQLKAFYDR----ESENPLEMFETVPVWRRQPVRVLSLFEDIKK---ELTSLG 207

Query: 576 IKVGKYVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLS 635
                            + +    G +K+V DV +  +K++EEWGPFDLV G +P     
Sbjct: 208 F----------------LESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATP----- 246

Query: 636 NVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLE 695
              P             F+F+ LL Y+RPK G  RPFFWMF + + +   D    SRFLE
Sbjct: 247 ---PLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE 303

Query: 696 CNPVMIDAIKVSAAHRARYFWGNLPGMNRIFGFPVHYTDVSNMGRGARQKLLGRSWSVPV 755
             PV I  +   +   A   W N+P +       V   ++S + +  +   L   W   +
Sbjct: 304 MEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKL 363

Query: 756 IRHLFAPLKDYF 767
           +++ F PL++YF
Sbjct: 364 VKNCFLPLREYF 375


>gi|28872778 cytosine-5-methyltransferase 3-like protein isoform 1
           [Homo sapiens]
          Length = 387

 Score =  265 bits (677), Expect = 1e-70
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 33/373 (8%)

Query: 397 REQMASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQS 456
           R+ +A +V  N+ ++ED C+ CG     + HPLFEGG+C  C+D+FL+  ++YDDDGYQS
Sbjct: 35  RDLIAYEVKANQRNIEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQS 94

Query: 457 YCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVL 516
           YC++CC G  LL+C N  C RC+C EC++ LVG GT+ +      W CY+CLP    G+L
Sbjct: 95  YCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLL 154

Query: 517 RRRKDWNVRLQAFFTSDTGLEYEAP-KLYPAIPAARRRPIRVLSLFDGIATGYLVLKELG 575
           +RR+ W  +L+AF+      E E P +++  +P  RR+P+RVLSLF+ I      L  LG
Sbjct: 155 QRRRKWRSQLKAFYDR----ESENPLEMFETVPVWRRQPVRVLSLFEDIKK---ELTSLG 207

Query: 576 IKVGKYVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLS 635
                            + +    G +K+V DV +  +K++EEWGPFDLV G +P     
Sbjct: 208 F----------------LESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATP----- 246

Query: 636 NVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLE 695
              P             F+F+ LL Y+RPK G  RPFFWMF + + +   D    SRFLE
Sbjct: 247 ---PLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE 303

Query: 696 CNPVMIDAIKVSAAHRARYFWGNLPGMNRIFGFP-VHYTDVSNMGRGARQKLLGRSWSVP 754
             PV I  +   +   A   W N+P +     +  V   ++S + +  +   L   W   
Sbjct: 304 MEPVTIPDVHGGSLQNAVRVWSNIPAIRSSRHWALVSEEELSLLAQNKQSSKLAAKWPTK 363

Query: 755 VIRHLFAPLKDYF 767
           ++++ F PL++YF
Sbjct: 364 LVKNCFLPLREYF 376


>gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]
          Length = 590

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 73/260 (28%), Positives = 100/260 (38%), Gaps = 48/260 (18%)

Query: 66  YTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERH--RPSPRS 123
           Y  +L G+ +G   D S  P            ++ PA    + +S SS E    +  P+ 
Sbjct: 349 YRAELVGELNGYLRDSSPAPC-----------ADGPAGGLADLSSGSSGEDDDFKSCPQG 397

Query: 124 TRGRQG--------RNHVDESPVEFPATRSL-RRRATASAGTPWPSPPSSYLTIDLTDDT 174
            +GR+G            D +     ++ SL   R++ S GTP             T D 
Sbjct: 398 PQGREGLAFLVSCPEGRADCASESACSSDSLDEARSSGSEGTPAD-----------TGDL 446

Query: 175 EDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIK 234
              HG    S +  AR         + +  V            +DG+   +GD+VWGKI 
Sbjct: 447 SPGHGASAPSVSREARQTVPPLTVRLHTQSVS-------ECITEDGRTVAVGDIVWGKIH 499

Query: 235 GFSWWPAMVVSWKATSKRQAMSGMR--WVQWFGDGKFSEVSADKLVALGLFSQHFNLATF 292
           GF WWPA V+      K       R   V WFG    S +S  K   L  FS+ F L  F
Sbjct: 500 GFPWWPARVLDISLGQKEDGEPSWREAKVSWFGSPTTSFLSISK---LSPFSEFFKL-RF 555

Query: 293 N--KLVSYRKAMYHALEKAR 310
           N  K   YRKA+  A   AR
Sbjct: 556 NRKKKGMYRKAITEAANAAR 575


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 392 DEDQSREQMASDVANNKSSLEDG------CLSCGR------KNPVSFHPLFEGGLCQTCR 439
           +ED S E   +D+       EDG      C +CG+      K+ +  HP  +  +C+ C 
Sbjct: 104 NEDASNENSENDITMQSLPKEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCF 163

Query: 440 DRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQ 499
             ++      D DG    C  C EG  L+ C    C   FC +C  +L   G    + + 
Sbjct: 164 KYYMSDDISRDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKC--ILRNLGRKELSTIM 219

Query: 500 E---PWSCYMCLPQ 510
           +    W CY+C P+
Sbjct: 220 DENNQWYCYICHPE 233


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 23/143 (16%)

Query: 385 NNGKD--RGDEDQSREQMASDVANNKSSLEDG------CLSCGR------KNPVSFHPLF 430
           N  KD  +G E +SR +M ++  N K   EDG      C +CG+      K+ +  HP  
Sbjct: 135 NEDKDDFKGPEFRSRSKMKTE--NLKKRGEDGLHGIVSCTACGQQVNHFQKDSIYRHPSL 192

Query: 431 EGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGT 490
           +  +C+ C   ++      D DG    C  C EG  L+ C    C   FC +C  +L   
Sbjct: 193 QVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKC--ILRNL 248

Query: 491 GTAAEAKLQE---PWSCYMCLPQ 510
           G    + + +    W CY+C P+
Sbjct: 249 GRKELSTIMDENNQWYCYICHPE 271


>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
          Length = 755

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 33/174 (18%)

Query: 160 SPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEY-- 217
           S  +S  +ID TDD + ++    SS +       D   G M +P   + S      +   
Sbjct: 577 SSSASVCSIDSTDDLKSSNSECSSSES------FDFPPGSMHAPSTSSTSSSSKEEKKLS 630

Query: 218 -----------------QDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR- 259
                             DG+   +GD+VW KI GF WWPA +++   + K   +   + 
Sbjct: 631 NSLKMKVFSKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLVRQE 690

Query: 260 -WVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVS--YRKAMYHALEKAR 310
             + WFG    S ++   L  L  F ++F  + FNK     YRKA+  A + A+
Sbjct: 691 ARISWFGSPTTSFLA---LSQLSPFLENFQ-SRFNKKRKGLYRKAITEAAKAAK 740


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 35/189 (18%)

Query: 44  PEIRGRRSSSRLSKREVSSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAV 103
           P  R RRS S + +R  SS       L+G         S +P  PK   +   R+ SP  
Sbjct: 334 PPPRHRRSRSPVRRRRRSSA-----SLSGSSSSSSSSRSRSP--PK---KPPKRTSSPPR 383

Query: 104 RTRNNNSVSS--RERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRRATASAG------ 155
           +TR  +  +S  R RHRPSP +T   + R+    SP    + R+ + R + S G      
Sbjct: 384 KTRRLSPSASPPRRRHRPSPPATPPPKTRH----SPTPQQSNRTRKSRVSVSPGRTSGKV 439

Query: 156 --------TPWPSPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEA 207
                      PSP      ++L++  ED  G   ++ +      Q  +Q   ++ Q  +
Sbjct: 440 TKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADS-----VQQRRQYRRQNQQSSS 494

Query: 208 DSGDGDSSE 216
           DSG   SSE
Sbjct: 495 DSGSSSSSE 503



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 94  TRTRSESPA-VRTRNNNSVSSRE---RHRPSPR---STRGRQGRNHVDESPVEFPATRSL 146
           +RTRS SP+  R R  +   SR    R RPSPR   S R R     +   P    +   +
Sbjct: 286 SRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPV 345

Query: 147 RRRATASAGTPWPSPPSS 164
           RRR  +SA     S  SS
Sbjct: 346 RRRRRSSASLSGSSSSSS 363



 Score = 30.4 bits (67), Expect = 6.5
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 97  RSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGT 156
           +  SP+  TR   S    +RH PSPR    R  +      PV   A+ S +RR + S  T
Sbjct: 662 KGSSPSRSTREARSPQPNKRHSPSPRP---RAPQTSSSPPPVRRGASSSPQRRQSPSPST 718


>gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform 3
           [Homo sapiens]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269


>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
           [Homo sapiens]
          Length = 1365

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 205 VEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMV 243
           +E   G    ++ + GK+    D++W K+  + WWPA V
Sbjct: 860 IEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEV 898



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 458  CTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPW-SCYMC 507
            C  C +G +L+LC    C + + + CL    G G     K + PW  C +C
Sbjct: 1242 CFRCGDGGQLVLCDRKFCTKAYHLSCL----GLGKRPFGKWECPWHHCDVC 1288


>gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform 4
           [Homo sapiens]
          Length = 629

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269


>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
           [Homo sapiens]
          Length = 1365

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 205 VEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMV 243
           +E   G    ++ + GK+    D++W K+  + WWPA V
Sbjct: 860 IEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEV 898



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 458  CTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPW-SCYMC 507
            C  C +G +L+LC    C + + + CL    G G     K + PW  C +C
Sbjct: 1242 CFRCGDGGQLVLCDRKFCTKAYHLSCL----GLGKRPFGKWECPWHHCDVC 1288


>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
           [Homo sapiens]
          Length = 1365

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 205 VEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMV 243
           +E   G    ++ + GK+    D++W K+  + WWPA V
Sbjct: 860 IEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEV 898



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 458  CTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPW-SCYMC 507
            C  C +G +L+LC    C + + + CL    G G     K + PW  C +C
Sbjct: 1242 CFRCGDGGQLVLCDRKFCTKAYHLSCL----GLGKRPFGKWECPWHHCDVC 1288


>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
           [Homo sapiens]
          Length = 1365

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
           ++ +GDLVW K+ G+ WWP MV +         + G +       VQ+FGD
Sbjct: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 205 VEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMV 243
           +E   G    ++ + GK+    D++W K+  + WWPA V
Sbjct: 860 IEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEV 898



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 458  CTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPW-SCYMC 507
            C  C +G +L+LC    C + + + CL    G G     K + PW  C +C
Sbjct: 1242 CFRCGDGGQLVLCDRKFCTKAYHLSCL----GLGKRPFGKWECPWHHCDVC 1288


>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
          Length = 1437

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 214 SSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVS 245
           ++E   G +F +GDLVW K+  + WWP MV S
Sbjct: 259 TTEVSTGVKFQVGDLVWSKVGTYPWWPCMVSS 290



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 201 ESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMV 243
           E   +E   G  + ++ + GK+     +VW K+  + WWPA +
Sbjct: 936 ECLSIEMPEGCWNCNDCKAGKKLHYKQIVWVKLGNYRWWPAEI 978



 Score = 30.8 bits (68), Expect = 5.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 454  YQSYCTVCCEGRELLLCSNTSCCRCFCVECLEV 486
            ++ YC  C +G EL++C    C + + + CL +
Sbjct: 1320 HEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNL 1352


>gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 214 SSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVS 245
           ++E   G +F +GDLVW K+  + WWP MV S
Sbjct: 259 TTEVSTGVKFQVGDLVWSKVGTYPWWPCMVSS 290


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
           sapiens]
          Length = 1912

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 23/168 (13%)

Query: 346 EGLKPNNTQPENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRG---DEDQSREQMAS 402
           EG  PN  + + K   R  D         AP ++K   + + + R    D+D   E    
Sbjct: 264 EGKGPN-ARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSSEDDDLDVESDFD 322

Query: 403 DVANNKSSLEDGCLSCG---RKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCT 459
           D + N  S+ DG  S     RK   +     +G    T  D +        +  +Q YC 
Sbjct: 323 DASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGY--------ETDHQDYCE 374

Query: 460 VCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMC 507
           VC +G E++LC   +C R + + CL+         E   +  WSC  C
Sbjct: 375 VCQQGGEIILCD--TCPRAYHMVCLD------PDMEKAPEGKWSCPHC 414



 Score = 31.6 bits (70), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 450 DDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECL 484
           +DD +  +C VC +G ELL C   +C   + + CL
Sbjct: 444 EDDHHMEFCRVCKDGGELLCCD--TCPSSYHIHCL 476


>gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens]
          Length = 711

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 136 SPVEFPATR-SLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQD 194
           SP   P  R S+  R+TA  G     PP S+ + D T         P   S    +  Q 
Sbjct: 327 SPGPGPGPRESVTPRSTARLG-----PPPSHASADAT------RCLPCPDSQKLEKECQS 375

Query: 195 SQQG-GMESPQ--VEADSGDGDSSE---YQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKA 248
           S++  G  S +  +E D  D +      Y + + F +G LVW K K + +WPA+V S + 
Sbjct: 376 SEESMGSNSMRSILEEDEEDEEPPRVLLYHEPRSFEVGMLVWHKHKKYPFWPAVVKSVRQ 435

Query: 249 TSKRQAM 255
             K+ ++
Sbjct: 436 RDKKASV 442


>gi|4504191 mutS homolog 6 [Homo sapiens]
          Length = 1360

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 222 EFGIGDLVWGKIKGFSWWPAMVVS--WKATSKRQAMSGMR-WVQWFGD 266
           +F  GDLVW K++G+ WWP +V +  +  T  R+    +R  VQ+F D
Sbjct: 89  DFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKGKSVRVHVQFFDD 136


>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform 2
            [Homo sapiens]
          Length = 1214

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 59/263 (22%), Positives = 99/263 (37%), Gaps = 36/263 (13%)

Query: 13   DAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREVSSL--------- 63
            D  G+ DS     +  + S    P + +    E+ GRR+S   SK+   +          
Sbjct: 853  DKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEV-GRRTSVLFSKKNPKTAGPPKRPGRP 911

Query: 64   -LSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPR 122
              +    +T    G        P+M  L +  R RS  P+  + +++  S+ +   P   
Sbjct: 912  PKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDKSTEDP--PMDL 969

Query: 123  STRGRQGRNH-VDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGTP 181
               G  G N  V +S + +    SL R ++ S  +   S  SS    D T  T    G  
Sbjct: 970  PANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESS---SSSSSSAASDRTSTTPSKQGRG 1026

Query: 182  QSSSTPYARLAQDSQQ--GGMESPQVEADSGDGDS---------------SEYQDGKEFG 224
            + S +      +DS +   G E+      +G G                 SE +D     
Sbjct: 1027 KPSFSR-GTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDA 1085

Query: 225  IGDLVWGKIKGFSWWPAMVVSWK 247
            + DLVW K +G+  +PA+++  K
Sbjct: 1086 L-DLVWAKCRGYPSYPALIIDPK 1107


>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform 1
            [Homo sapiens]
          Length = 1220

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 59/263 (22%), Positives = 99/263 (37%), Gaps = 36/263 (13%)

Query: 13   DAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREVSSL--------- 63
            D  G+ DS     +  + S    P + +    E+ GRR+S   SK+   +          
Sbjct: 859  DKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEV-GRRTSVLFSKKNPKTAGPPKRPGRP 917

Query: 64   -LSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPR 122
              +    +T    G        P+M  L +  R RS  P+  + +++  S+ +   P   
Sbjct: 918  PKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDKSTEDP--PMDL 975

Query: 123  STRGRQGRNH-VDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGTP 181
               G  G N  V +S + +    SL R ++ S  +   S  SS    D T  T    G  
Sbjct: 976  PANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESS---SSSSSSAASDRTSTTPSKQGRG 1032

Query: 182  QSSSTPYARLAQDSQQ--GGMESPQVEADSGDGDS---------------SEYQDGKEFG 224
            + S +      +DS +   G E+      +G G                 SE +D     
Sbjct: 1033 KPSFSR-GTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDA 1091

Query: 225  IGDLVWGKIKGFSWWPAMVVSWK 247
            + DLVW K +G+  +PA+++  K
Sbjct: 1092 L-DLVWAKCRGYPSYPALIIDPK 1113


>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
          Length = 1301

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 7/219 (3%)

Query: 2   KGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREVS 61
           K D+   N  + +   + S   N + S  SSDS    ++  + +     +SS  S    S
Sbjct: 639 KSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSD---SSNSSDSSDSSDS 695

Query: 62  SLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERH---- 117
           S  S + D +   D +  D SD+        ++   S+S      +++S SS   +    
Sbjct: 696 SNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDS 755

Query: 118 RPSPRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDT 177
             S  S+      +  D S     +  S    ++ S+ +   S  S       + D+ D+
Sbjct: 756 SDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDS 815

Query: 178 HGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSE 216
             +  S+S+  +  +  S           +DS DG  S+
Sbjct: 816 SDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSD 854



 Score = 35.4 bits (80), Expect = 0.20
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 9   NGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREVSSLLSYTQ 68
           NG  + G  ++    +G     SSDS                SS+     + S   S   
Sbjct: 527 NGNGNNGNDDNDKSDSGKGKSDSSDSD------------SSDSSNSSDSSDSSDSDSSDS 574

Query: 69  DLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQ 128
           + + D D  D D SD+             S+S      +++S SS          ++   
Sbjct: 575 NSSSDSDSSDSDSSDS--------SDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDS 626

Query: 129 GRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGTPQSSSTPY 188
            ++  D S  +  +  S    + +S  +      +S  + D +D ++ +  +  S S+  
Sbjct: 627 SKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNS 686

Query: 189 ARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGD 227
           +  +  S           +DS D DSS+  D       D
Sbjct: 687 SDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSD 725



 Score = 33.1 bits (74), Expect = 1.0
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 24/216 (11%)

Query: 4   DTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREVSSL 63
           D+ + +   D+    DS   N + S  SSDS          +      SS  S    SS 
Sbjct: 787 DSSNSSDSSDSSNSSDSS--NSSDSSDSSDSSD-------SDSSNSSDSSNSSDSSDSSN 837

Query: 64  LSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPRS 123
            S + D +   DG D D S+             RS+S      +++S SS      S  S
Sbjct: 838 SSDSSDSSDSSDGSDSDSSN-------------RSDSSNSSDSSDSSDSSNS--SDSSDS 882

Query: 124 TRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGTPQS 183
           +   +  N  D S     +       + +S  +   +   S  + + +D++  +  +  S
Sbjct: 883 SDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSS 942

Query: 184 SSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQD 219
            S+  +  +  S           +DS D +SS+  D
Sbjct: 943 DSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSD 978


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
           sapiens]
          Length = 1954

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 450 DDDGY----QSYCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCY 505
           D DGY    Q YC VC +G E++LC   +C R + + CL+         E   +  WSC 
Sbjct: 334 DGDGYETDHQDYCEVCQQGGEIILCD--TCPRAYHLVCLD------PELEKAPEGKWSCP 385

Query: 506 MC 507
            C
Sbjct: 386 HC 387



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 450 DDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLP 509
           ++D +  +C VC +G ELL C   +C   + + CL   +      E      W C  C  
Sbjct: 411 EEDDHMEFCRVCKDGGELLCCD--ACPSSYHLHCLNPPLPEIPNGE------WLCPRCTC 462

Query: 510 QRCHGVLRRRKDW 522
               G ++R   W
Sbjct: 463 PPLKGKVQRILHW 475


>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
          Length = 2229

 Score = 37.4 bits (85), Expect = 0.053
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 21/105 (20%)

Query: 137  PVEFPATRSLRRRATASAGTPWPSPPSSYLT------IDLTDDTEDTHGTPQSSSTPYAR 190
            PV+ PA  S R+  TA + T   S    + +      +DL+ ++ ++  T    S+PY  
Sbjct: 1636 PVQAPANDSWRKAVTAFSSTETGSAEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGT 1695

Query: 191  LAQDSQQG-GMESP--------------QVEADSGDGDSSEYQDG 220
            L  +   G G+  P              Q +++ G G S E++ G
Sbjct: 1696 LKPEEMSGPGLAEPKADSHKEQAPKPSEQKDSEQGSGQSKEHRPG 1740


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,240,754
Number of Sequences: 37866
Number of extensions: 1589574
Number of successful extensions: 5560
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 5273
Number of HSP's gapped (non-prelim): 335
length of query: 770
length of database: 18,247,518
effective HSP length: 110
effective length of query: 660
effective length of database: 14,082,258
effective search space: 9294290280
effective search space used: 9294290280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.