Guide to the Human Genome
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Name: SLC27A1 Sequence: fasta or formatted (646aa) NCBI GI: 38524616
Description:

solute carrier family 27, member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         64           4
 C cysteine            2.3         15           1
 D aspartate           4.6         30           2
 E glutamate           4.8         31           2
 F phenylalanine       4.5         29           2
 G glycine             9.8         63           2
 H histidine           2.0         13           2
 I isoleucine          4.5         29           2
 K lysine              3.4         22           2
 L leucine            11.9         77           2
 M methionine          1.7         11           1
 N asparagine          2.3         15           1
 P proline             4.5         29           1
 Q glutamine           3.9         25           2
 R arginine            7.6         49           2
 S serine              5.1         33           1
 T threonine           4.2         27           2
 V valine              7.9         51           2
 W tryptophan          1.4          9           1
 Y tyrosine            3.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 27, member 1 
SLC27A4               0.621   solute carrier family 27 (fatty acid transporter), m...
SLC27A3               0.301   solute carrier family 27 member 3 
SLC27A6               0.301   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.301   solute carrier family 27 (fatty acid transporter), m...
SLC27A2               0.290   solute carrier family 27 (fatty acid transporter), ...
SLC27A5               0.275   solute carrier family 27 (fatty acid transporter), m...
SLC27A2               0.234   solute carrier family 27 (fatty acid transporter), ...
ACSM2B                0.063   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2B                0.063   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2A                0.058   acyl-CoA synthetase medium-chain family member 2A [H...
LOC100291873          0.052   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
LOC100291873          0.052   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
ACSM5                 0.052   acyl-CoA synthetase medium-chain family member 5 [Ho...
ACSM4                 0.050   acyl-CoA synthetase medium-chain family member 4 [H...
ACSM1                 0.049   acyl-CoA synthetase medium-chain family member 1 [H...
ACSF2                 0.045   acyl-CoA synthetase family member 2 
ACSS1                 0.041   acyl-CoA synthetase short-chain family member 1 [Hom...
ACSM3                 0.039   SA hypertension-associated homolog isoform 1 
ACSF3                 0.036   acyl-CoA synthetase family member 3 
ACSF3                 0.036   acyl-CoA synthetase family member 3 
ACSS2                 0.033   acyl-CoA synthetase short-chain family member 2 iso...
ACSS2                 0.032   acyl-CoA synthetase short-chain family member 2 isofo...
C10orf129             0.020   acyl-coenzyme A synthetase ACSM6, mitochondrial [Ho...
ACSM3                 0.015   SA hypertension-associated homolog isoform 2 
ACSL5                 0.013   acyl-CoA synthetase long-chain family member 5 isofo...
ACSL5                 0.013   acyl-CoA synthetase long-chain family member 5 isofo...
ACSL5                 0.013   acyl-CoA synthetase long-chain family member 5 isofo...
ACSL4                 0.009   acyl-CoA synthetase long-chain family member 4 isofor...
ACSL4                 0.009   acyl-CoA synthetase long-chain family member 4 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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