Guide to the Human Genome
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Name: ACSM5 Sequence: fasta or formatted (579aa) NCBI GI: 38505220
Description:

acyl-CoA synthetase medium-chain family member 5

Referenced in:

Xenobiotic Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         43           2
 C cysteine            2.1         12           2
 D aspartate           4.3         25           2
 E glutamate           6.4         37           2
 F phenylalanine       3.8         22           2
 G glycine             6.9         40           2
 H histidine           2.1         12           1
 I isoleucine          4.0         23           2
 K lysine              5.2         30           1
 L leucine             8.6         50           2
 M methionine          1.9         11           2
 N asparagine          3.1         18           1
 P proline             6.9         40           2
 Q glutamine           3.3         19           1
 R arginine            6.7         39           2
 S serine              7.9         46           3
 T threonine           5.7         33           2
 V valine              8.1         47           2
 W tryptophan          2.9         17           2
 Y tyrosine            2.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acyl-CoA synthetase medium-chain family member 5 [Ho... 
ACSM4                 0.617   acyl-CoA synthetase medium-chain family member 4 [H...
ACSM3                 0.608   SA hypertension-associated homolog isoform 1 
ACSM1                 0.550   acyl-CoA synthetase medium-chain family member 1 [H...
ACSM2A                0.534   acyl-CoA synthetase medium-chain family member 2A [H...
ACSM2B                0.532   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2B                0.532   acyl-CoA synthetase medium-chain family member 2B [...
LOC100291873          0.490   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
LOC100291873          0.490   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
ACSM3                 0.390   SA hypertension-associated homolog isoform 2 
C10orf129             0.338   acyl-coenzyme A synthetase ACSM6, mitochondrial [Ho...
ACSS2                 0.132   acyl-CoA synthetase short-chain family member 2 isofo...
ACSS2                 0.132   acyl-CoA synthetase short-chain family member 2 iso...
ACSS1                 0.123   acyl-CoA synthetase short-chain family member 1 [Hom...
ACSS3                 0.121   acyl-CoA synthetase short-chain family member 3 [Hom...
ACSF3                 0.089   acyl-CoA synthetase family member 3 
ACSF3                 0.089   acyl-CoA synthetase family member 3 
ACSF2                 0.086   acyl-CoA synthetase family member 2 
SLC27A1               0.057   solute carrier family 27, member 1 
SLC27A3               0.039   solute carrier family 27 member 3 
SLC27A4               0.038   solute carrier family 27 (fatty acid transporter), m...
AACS                  0.033   acetoacetyl-CoA synthetase 
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A2               0.029   solute carrier family 27 (fatty acid transporter), ...
SLC27A5               0.027   solute carrier family 27 (fatty acid transporter), m...
AASDH                 0.023   aminoadipate-semialdehyde dehydrogenase 
LOC100132247          0.022   hypothetical protein LOC100132247 
LOC728888             0.022   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC728741             0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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