Guide to the Human Genome
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Name: LOC100291873 Sequence: fasta or formatted (571aa) NCBI GI: 239756507
Description:

PREDICTED: similar to Acyl-coenzyme A synthetase ACSM2B, mitochondrial isoform 2

Referenced in:

Xenobiotic Pathways

Other entries for this name:
alt mRNA [571aa] PREDICTED: similar to Acyl-coenzyme A synthetase ACSM2B, mitochon...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         41           2
 C cysteine            1.9         11           1
 D aspartate           4.6         26           2
 E glutamate           5.3         30           1
 F phenylalanine       3.3         19           1
 G glycine             8.1         46           2
 H histidine           2.3         13           2
 I isoleucine          5.1         29           2
 K lysine              6.5         37           2
 L leucine            10.7         61           2
 M methionine          3.7         21           2
 N asparagine          2.8         16           1
 P proline             4.4         25           1
 Q glutamine           4.7         27           2
 R arginine            4.2         24           1
 S serine              8.1         46           2
 T threonine           5.8         33           2
 V valine              6.1         35           2
 W tryptophan          3.0         17           2
 Y tyrosine            2.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Acyl-coenzyme A synthetase AC... 
LOC100291873          1.000   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
ACSM2B                0.946   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2B                0.946   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2A                0.925   acyl-CoA synthetase medium-chain family member 2A [H...
ACSM4                 0.537   acyl-CoA synthetase medium-chain family member 4 [H...
ACSM1                 0.512   acyl-CoA synthetase medium-chain family member 1 [H...
ACSM5                 0.502   acyl-CoA synthetase medium-chain family member 5 [Ho...
ACSM3                 0.497   SA hypertension-associated homolog isoform 1 
ACSM3                 0.324   SA hypertension-associated homolog isoform 2 
C10orf129             0.280   acyl-coenzyme A synthetase ACSM6, mitochondrial [Ho...
ACSS1                 0.114   acyl-CoA synthetase short-chain family member 1 [Hom...
ACSS3                 0.100   acyl-CoA synthetase short-chain family member 3 [Hom...
ACSS2                 0.097   acyl-CoA synthetase short-chain family member 2 isofo...
ACSS2                 0.096   acyl-CoA synthetase short-chain family member 2 iso...
ACSF3                 0.074   acyl-CoA synthetase family member 3 
ACSF3                 0.074   acyl-CoA synthetase family member 3 
ACSF2                 0.072   acyl-CoA synthetase family member 2 
SLC27A1               0.059   solute carrier family 27, member 1 
SLC27A4               0.040   solute carrier family 27 (fatty acid transporter), m...
SLC27A3               0.034   solute carrier family 27 member 3 
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
LOC100132247          0.028   hypothetical protein LOC100132247 
LOC728888             0.028   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC728741             0.028   PREDICTED: hypothetical protein 
NPIPL3                0.028   nuclear pore complex interacting protein-like 3 [Ho...
LOC100288332          0.027   PREDICTED: hypothetical protein XP_002343465 
LOC642799             0.027   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC642778             0.027   PREDICTED: similar to GPS, PLAT and transmembrane d...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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