Guide to the Human Genome
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Name: TTC18 Sequence: fasta or formatted (1121aa) NCBI GI: 229577238
Description:

tetratricopeptide repeat domain 18

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         83           3
 C cysteine            1.7         19           1
 D aspartate           3.8         43           2
 E glutamate           9.3        104           4
 F phenylalanine       3.7         41           2
 G glycine             5.8         65           2
 H histidine           2.4         27           2
 I isoleucine          5.0         56           2
 K lysine              7.3         82           2
 L leucine            11.0        123           3
 M methionine          1.8         20           1
 N asparagine          3.6         40           2
 P proline             5.5         62           2
 Q glutamine           5.4         61           2
 R arginine            3.3         37           2
 S serine              6.4         72           2
 T threonine           5.4         60           3
 V valine              6.5         73           2
 W tryptophan          0.9         10           1
 Y tyrosine            3.8         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 18 
PDCD11                0.011   programmed cell death 11 
IFT88                 0.010   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.010   intraflagellar transport 88 homolog isoform 2 
TTC27                 0.009   tetratricopeptide repeat domain 27 
CTR9                  0.009   SH2 domain binding protein 1 
CDC27                 0.007   cell division cycle protein 27 isoform 1 
CDC27                 0.007   cell division cycle protein 27 isoform 2 
TTC13                 0.007   tetratricopeptide repeat domain 13 isoform b 
TTC13                 0.007   tetratricopeptide repeat domain 13 isoform a 
CDC23                 0.007   cell division cycle protein 23 
RPAP3                 0.006   RNA polymerase II associated protein 3 isoform 3 [H...
RPAP3                 0.006   RNA polymerase II associated protein 3 isoform 1 [H...
TMTC1                 0.006   transmembrane and tetratricopeptide repeat containin...
SGTA                  0.006   small glutamine-rich tetratricopeptide 
CDC16                 0.005   anaphase-promoting complex, subunit 6 
CDC16                 0.005   anaphase-promoting complex, subunit 6 
RPAP3                 0.005   RNA polymerase II associated protein 3 isoform 2 [H...
TTC6                  0.005   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.005   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.005   PREDICTED: chromosome 14 open reading frame 25 [Hom...
STIP1                 0.005   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TTC37                 0.005   tetratricopeptide repeat domain 37 
LIG1                  0.005   DNA ligase I 
PEX5                  0.005   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.005   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.005   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.005   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.005   peroxisomal biogenesis factor 5 isoform b 
TTC7A                 0.005   tetratricopeptide repeat domain 7A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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