PNKP 25573

Name: PNKP	Sequence: fasta or formatted (521aa)		NCBI GI: 31543419
Description: polynucleotide kinase 3' phosphatase		Referenced in: DNases, Recombination, and DNA Repair
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 44 2 C cysteine 1.7 9 1 D aspartate 4.2 22 1 E glutamate 6.9 36 2 F phenylalanine 4.6 24 2 G glycine 9.0 47 2 H histidine 1.3 7 1 I isoleucine 2.5 13 1 K lysine 5.4 28 3 L leucine 10.2 53 2 M methionine 1.3 7 1 N asparagine 2.5 13 2 P proline 8.4 44 2 Q glutamine 3.5 18 1 R arginine 6.9 36 1 S serine 5.4 28 2 T threonine 6.7 35 2 V valine 7.5 39 3 W tryptophan 1.7 9 1 Y tyrosine 1.7 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 polynucleotide kinase 3' phosphatase APTX 0.043 aprataxin isoform a APTX 0.043 aprataxin isoform b APLF 0.010 aprataxin and PNKP like factor HNRNPU 0.009 heterogeneous nuclear ribonucleoprotein U isoform b ... HNRNPU 0.009 heterogeneous nuclear ribonucleoprotein U isoform a ... DHX34 0.007 DEAH (Asp-Glu-Ala-His) box polypeptide 34 ZNF200 0.005 zinc finger protein 200 isoform 3 ZNF200 0.005 zinc finger protein 200 isoform 3 ZNF200 0.005 zinc finger protein 200 isoform 3 LMTK3 0.005 lemur tyrosine kinase 3 DTX1 0.005 deltex homolog 1 MAP4K4 0.005 mitogen-activated protein kinase kinase kinase kinas... MAP4K4 0.005 mitogen-activated protein kinase kinase kinase kinas... MAP4K4 0.005 mitogen-activated protein kinase kinase kinase kinas... GALNT10 0.005 GalNAc transferase 10 isoform a LILRB5 0.005 leukocyte immunoglobulin-like receptor, subfamily B... LILRB5 0.005 leukocyte immunoglobulin-like receptor, subfamily B... LILRB5 0.005 leukocyte immunoglobulin-like receptor, subfamily B, ... LOC100132015 0.005 PREDICTED: similar to testis expressed sequence 13A... LOC100132015 0.005 PREDICTED: similar to testis expressed sequence 13A... LOC100132015 0.005 PREDICTED: similar to testis expressed sequence 13A... ATP1A2 0.005 Na+/K+ -ATPase alpha 2 subunit proprotein CMPK1 0.005 UMP-CMP kinase 1 isoform a MINK1 0.005 misshapen/NIK-related kinase isoform 4 MINK1 0.005 misshapen/NIK-related kinase isoform 3 PBXIP1 0.005 pre-B-cell leukemia homeobox interacting protein 1 [... HNRNPUL1 0.004 heterogeneous nuclear ribonucleoprotein U-like 1 iso... HNRNPUL1 0.004 heterogeneous nuclear ribonucleoprotein U-like 1 iso... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.