Search of human proteins with 28329433

Search of human proteins with 28329433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28329433 aprataxin isoform c [Homo sapiens]
         (254 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28329436 aprataxin isoform a [Homo sapiens]                        524   e-149
gi|28329433 aprataxin isoform c [Homo sapiens]                        524   e-149
gi|28329430 aprataxin isoform b [Homo sapiens]                        419   e-117
gi|28329427 aprataxin isoform d [Homo sapiens]                        351   4e-97
gi|8923156 aprataxin isoform d [Homo sapiens]                         351   4e-97
gi|189217863 histidine triad nucleotide binding protein 3 [Homo ...    59   5e-09
gi|4885413 histidine triad nucleotide binding protein 1 [Homo sa...    47   2e-05
gi|14211923 PKCI-1-related HIT protein [Homo sapiens]                  46   4e-05
gi|7661734 mRNA decapping enzyme [Homo sapiens]                        38   0.007
gi|57864582 hornerin [Homo sapiens]                                    31   0.91 
gi|40217790 zinc finger protein 512 [Homo sapiens]                     31   0.91 
gi|13376064 zinc finger protein 408 [Homo sapiens]                     30   2.0  
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ...    30   2.7  
gi|7662010 zinc finger protein 516 [Homo sapiens]                      29   3.5  
gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens]             29   4.5  
gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens]             29   4.5  
gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens]             29   4.5  
gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens]             29   4.5  
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ...    29   4.5  
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ...    29   4.5  
gi|16418391 zinc finger, imprinted 3 [Homo sapiens]                    29   4.5  
gi|46410933 zinc finger protein 528 [Homo sapiens]                     29   4.5  
gi|66932932 promyelocytic leukemia zinc finger protein [Homo sap...    28   5.9  
gi|21359888 promyelocytic leukemia zinc finger protein [Homo sap...    28   5.9  
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    28   5.9  
gi|145279222 WD repeat domain 66 [Homo sapiens]                        28   5.9  
gi|190610008 zinc finger protein 317 [Homo sapiens]                    28   5.9  
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]      28   7.7  
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]       28   7.7  
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]           28   7.7  

>gi|28329436 aprataxin isoform a [Homo sapiens]
          Length = 342

 Score =  524 bits (1349), Expect = e-149
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
           MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS
Sbjct: 89  MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 148

Query: 61  VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120
           VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT
Sbjct: 149 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 208

Query: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180
           SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF
Sbjct: 209 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 268

Query: 181 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 240
           DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS
Sbjct: 269 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 328

Query: 241 IPQLKEHLRKHWTQ 254
           IPQLKEHLRKHWTQ
Sbjct: 329 IPQLKEHLRKHWTQ 342


>gi|28329433 aprataxin isoform c [Homo sapiens]
          Length = 254

 Score =  524 bits (1349), Expect = e-149
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
           MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS
Sbjct: 1   MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60

Query: 61  VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120
           VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT
Sbjct: 61  VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120

Query: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180
           SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF
Sbjct: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180

Query: 181 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 240
           DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS
Sbjct: 181 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 240

Query: 241 IPQLKEHLRKHWTQ 254
           IPQLKEHLRKHWTQ
Sbjct: 241 IPQLKEHLRKHWTQ 254


>gi|28329430 aprataxin isoform b [Homo sapiens]
          Length = 306

 Score =  419 bits (1077), Expect = e-117
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
           MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS
Sbjct: 103 MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 162

Query: 61  VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120
           VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT
Sbjct: 163 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 222

Query: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180
           SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF
Sbjct: 223 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 282

Query: 181 DSPCLKNKKHWNSFNTEYFLESQ 203
           DSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 283 DSPCLKNKKHWNSFNTEYFLESQ 305


>gi|28329427 aprataxin isoform d [Homo sapiens]
          Length = 168

 Score =  351 bits (900), Expect = 4e-97
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 87  MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 146
           MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1   MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60

Query: 147 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 206
           IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61  IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120

Query: 207 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 254
           EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168


>gi|8923156 aprataxin isoform d [Homo sapiens]
          Length = 168

 Score =  351 bits (900), Expect = 4e-97
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 87  MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 146
           MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1   MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60

Query: 147 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 206
           IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61  IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120

Query: 207 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 254
           EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168


>gi|189217863 histidine triad nucleotide binding protein 3 [Homo
           sapiens]
          Length = 182

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 88  QDPKMQVY--KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEK 145
           QDP  ++   ++E ++  KD  P A +H+LV+P   I + + + ++ +EL+++M TVG+ 
Sbjct: 57  QDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKT 116

Query: 146 VIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 177
           ++     +     R+G+H  P  S+SH+HLHV++
Sbjct: 117 ILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150


>gi|4885413 histidine triad nucleotide binding protein 1 [Homo
           sapiens]
          Length = 126

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 82  GLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHT 141
           G  I  + P   +++D++ +   D  P+A  H+LV+P   IS +     +   LL H+  
Sbjct: 20  GKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMI 79

Query: 142 VGEKVIVDFAGSSKLRFRL--GYHAIPSMSHVHLHVI 176
           VG+K   D   +   R  +  G     S+ HVHLHV+
Sbjct: 80  VGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVL 116


>gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
          Length = 163

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 40  AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 95
           AA+ A A TG+  G   G   V     + K + A     +   +S+ L  S+  P   +Y
Sbjct: 13  AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70

Query: 96  KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 153
           +D+Q +V +D  P+A  H+LV+P   I  +     E  +LL H+  V ++          
Sbjct: 71  EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130

Query: 154 SKLRFRLGYHAIPSMSHVHLHVI 176
            +L    G     S+ H+H+HV+
Sbjct: 131 YRLVINDGKLGAQSVYHLHIHVL 153


>gi|7661734 mRNA decapping enzyme [Homo sapiens]
          Length = 337

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 122 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 181
           I SL+ +  EHL LL+++   G++ I+          R+  H +PS  H+H+H  +  F+
Sbjct: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286

Query: 182 SP 183
           +P
Sbjct: 287 AP 288


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 30   SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 82
            SG+S S E+  ++  ++  G + GS+SG  S     G+     ++SLGH   G
Sbjct: 1891 SGHSSSYEQHGSRSGQSSRGEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1940



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30   SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 82
            SG+S S E+  ++  ++  G   GS+SG  S     G+     ++SLGH   G
Sbjct: 1421 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1470



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30   SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 82
            SG+S S E+  ++  ++  G   GS+SG  S     G+     ++SLGH   G
Sbjct: 2361 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 2410



 Score = 28.9 bits (63), Expect = 4.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30   SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 82
            SG+S S E+  ++  ++    + GS+SG  S     G+     ++SLGH   G
Sbjct: 951  SGHSSSYEQHGSRSGQSSRSEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1000


>gi|40217790 zinc finger protein 512 [Homo sapiens]
          Length = 567

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)

Query: 121 SISSLKAVAREHLE-LLKHMHTVGEKVIVDFAGSSKLRFRLG--YHAIPSMSHVHLHVIS 177
           S  + +AV R+ +E L KHM    +++        +LR   G  YH + + + + +    
Sbjct: 170 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAG 229

Query: 178 QDFDSPCLKNK-----------KHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLK 226
            + D P  + +           +      +  F      +  V++ G+     G  EL K
Sbjct: 230 DEIDEPSERERLRTVLKRLGKLRCMRESCSSSFTSIMGYLYHVRKCGK-----GAAELEK 284

Query: 227 LPLRCHECQQLLPSIPQLKEHLR 249
           + L+CH C +   S   L  HLR
Sbjct: 285 MTLKCHHCGKPYRSKAGLAYHLR 307


>gi|13376064 zinc finger protein 408 [Homo sapiens]
          Length = 720

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 228 PLRCHECQQLLPSIPQLKEHLRKH 251
           P RC  C    P +P+L+ HL  H
Sbjct: 523 PYRCPHCADAFPQLPELRRHLISH 546


>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
            sapiens]
          Length = 2146

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 130  REHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHA 164
            REHLELL  +  V E  +   AGS   R  L ++A
Sbjct: 1885 REHLELLARLRGVPEAQVAQTAGSGLARLGLSWYA 1919


>gi|7662010 zinc finger protein 516 [Homo sapiens]
          Length = 1163

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 212 AGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 251
           +G   V +G PEL      C  C Q       LK H++KH
Sbjct: 231 SGEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKH 270


>gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens]
          Length = 425

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 167 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 217
           S S  H H+ ++QDF S   K           W+S  NTE   +     ++  ++  +T 
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170

Query: 218 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 251
           R       + P +C EC++       L  H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204


>gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens]
          Length = 425

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 167 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 217
           S S  H H+ ++QDF S   K           W+S  NTE   +     ++  ++  +T 
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170

Query: 218 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 251
           R       + P +C EC++       L  H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204


>gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens]
          Length = 425

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 167 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 217
           S S  H H+ ++QDF S   K           W+S  NTE   +     ++  ++  +T 
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170

Query: 218 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 251
           R       + P +C EC++       L  H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204


>gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens]
          Length = 425

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 167 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 217
           S S  H H+ ++QDF S   K           W+S  NTE   +     ++  ++  +T 
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170

Query: 218 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 251
           R       + P +C EC++       L  H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204


>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)

Query: 15  EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 74
           E+  P  +  +K+K+    D +E  +  E   G      S   +   P  K K   I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319

Query: 75  SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 134
            +   S+  K + +D ++   +++    +KD                 SSL    R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361

Query: 135 LLKHMHTVGEKVI 147
             K  H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374


>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)

Query: 15  EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 74
           E+  P  +  +K+K+    D +E  +  E   G      S   +   P  K K   I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319

Query: 75  SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 134
            +   S+  K + +D ++   +++    +KD                 SSL    R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361

Query: 135 LLKHMHTVGEKVI 147
             K  H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374


>gi|16418391 zinc finger, imprinted 3 [Homo sapiens]
          Length = 472

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 229 LRCHECQQLLPSIPQLKEHLRKHWTQ 254
           L+C+ C++L  S  +L+ HLR+H  Q
Sbjct: 167 LKCNACRKLFSSKSRLQSHLRRHACQ 192


>gi|46410933 zinc finger protein 528 [Homo sapiens]
          Length = 628

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 228 PLRCHECQQLLPSIPQLKEHLRKH 251
           P +CHEC +L  S   L +H R H
Sbjct: 240 PYKCHECGKLFSSNSNLSQHQRIH 263



 Score = 28.5 bits (62), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 228 PLRCHECQQLLPSIPQLKEHLRKH 251
           P +CHEC ++  S  +L +H R H
Sbjct: 268 PYKCHECDKVFRSSSKLAQHQRIH 291


>gi|66932932 promyelocytic leukemia zinc finger protein [Homo
           sapiens]
          Length = 673

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 231 CHECQQLLPSIPQLKEHLRKH 251
           C EC +  PS   LK HLR H
Sbjct: 520 CSECNRTFPSHTALKRHLRSH 540


>gi|21359888 promyelocytic leukemia zinc finger protein [Homo
           sapiens]
          Length = 673

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 231 CHECQQLLPSIPQLKEHLRKH 251
           C EC +  PS   LK HLR H
Sbjct: 520 CSECNRTFPSHTALKRHLRSH 540


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 22/96 (22%)

Query: 76  LGHWSQGLKISMQDPKMQV--------YKDEQVVVIKDKYPKARYHWLVLPWTSISSLKA 127
           L HW      +   P +QV         KDE+++ +K+K  K               L+ 
Sbjct: 829 LRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKVKEKQTKVE-----------GELEE 877

Query: 128 VAREHLELLKHMHTVGEKVIVD---FAGSSKLRFRL 160
           + R+H +LL+  + + E++  +   FA + ++R RL
Sbjct: 878 MERKHQQLLEEKNILAEQLQAETELFAEAEEMRARL 913


>gi|145279222 WD repeat domain 66 [Homo sapiens]
          Length = 1149

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 13 EEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQ 58
          EEE  NP  +     ++    D+I    +QE E  TG E G   G+
Sbjct: 22 EEEEPNPNYKEVEDPQQESKDDTIAWRESQEEERKTGEEEGEEEGK 67


>gi|190610008 zinc finger protein 317 [Homo sapiens]
          Length = 595

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 228 PLRCHECQQLLPSIPQLKEHLRKH 251
           P  CH+C +       LKEH+R H
Sbjct: 333 PYECHDCGKAFQHPSHLKEHVRNH 356


>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
          Length = 733

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 220 GMPELLKLPLRCHECQQLLPSIPQLKEHLRKHW 252
           G+ ELL+ P RC  C +       L++H + HW
Sbjct: 499 GLGELLR-PYRCASCDKSYKDPATLRQHEKTHW 530


>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
          Length = 714

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 220 GMPELLKLPLRCHECQQLLPSIPQLKEHLRKHW 252
           G+ ELL+ P RC  C +       L++H + HW
Sbjct: 480 GLGELLR-PYRCASCDKSYKDPATLRQHEKTHW 511


>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
          Length = 5120

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 1    MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
            M  E Y  + E E+   + G++   + ++    + + ++  QE +    LE      +  
Sbjct: 2301 MDEEEYDALTEEEKLTFDRGIQQALRERKKREQERLAKEM-QEKKLQQELERQKEEDELK 2359

Query: 61   VPLKKGKDAPIKKE 74
              +KKGK  PIK+E
Sbjct: 2360 RRVKKGKQGPIKEE 2373


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,358
Number of Sequences: 37866
Number of extensions: 462348
Number of successful extensions: 4228
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4183
Number of HSP's gapped (non-prelim): 53
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.