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Search of human proteins with 27735047
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27735047 DCN1, defective in cullin neddylation 1, domain
containing 3 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27735047 DCN1, defective in cullin neddylation 1, domain cont... 630 0.0
gi|62122952 DCN1, defective in cullin neddylation 1, domain cont... 171 6e-43
gi|36030883 RP42 homolog [Homo sapiens] 167 1e-41
gi|14150015 DCN1, defective in cullin neddylation 1, domain cont... 114 1e-25
gi|94536778 DCN1, defective in cullin neddylation 1, domain cont... 111 7e-25
gi|94536780 DCN1, defective in cullin neddylation 1, domain cont... 94 2e-19
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 33 0.24
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 33 0.41
gi|239755027 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|239749540 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo ... 32 0.70
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 32 0.70
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 32 0.91
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 32 0.91
gi|116089333 kelch domain containing 7A [Homo sapiens] 32 0.91
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 30 2.0
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 30 2.0
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 30 2.0
gi|60097902 filaggrin [Homo sapiens] 30 2.6
gi|119220552 sidekick 1 [Homo sapiens] 30 3.5
gi|239750483 PREDICTED: similar to zinc finger protein 165 [Homo... 29 4.5
gi|169205887 PREDICTED: similar to zinc finger protein 165 [Homo... 29 4.5
gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens] 29 4.5
gi|149944593 hypothetical protein LOC23349 [Homo sapiens] 29 4.5
gi|31543559 radial spoke 3 homolog [Homo sapiens] 29 5.9
gi|9966761 choroideremia isoform a [Homo sapiens] 29 5.9
gi|190885493 hypothetical protein LOC84984 [Homo sapiens] 29 5.9
gi|239743649 PREDICTED: IQ motif and ankyrin repeat domain-conta... 28 7.7
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 28 7.7
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 28 7.7
>gi|27735047 DCN1, defective in cullin neddylation 1, domain
containing 3 [Homo sapiens]
Length = 304
Score = 630 bits (1626), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAE 60
MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAE
Sbjct: 1 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAE 60
Query: 61 AATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCV 120
AATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCV
Sbjct: 61 AATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCV 120
Query: 121 DPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFK 180
DPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFK
Sbjct: 121 DPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFK 180
Query: 181 DLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISR 240
DLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISR
Sbjct: 181 DLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISR 240
Query: 241 DTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEGLCP 300
DTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEGLCP
Sbjct: 241 DTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGEGRGALSSGPEGLCP 300
Query: 301 EEQT 304
EEQT
Sbjct: 301 EEQT 304
>gi|62122952 DCN1, defective in cullin neddylation 1, domain
containing 2 [Homo sapiens]
Length = 259
Score = 171 bits (434), Expect = 6e-43
Identities = 92/201 (45%), Positives = 126/201 (62%), Gaps = 8/201 (3%)
Query: 77 RESKSNAEESSLQRLEELFRRYKDER-EDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQ 135
RES NA + ++LE L+ RYKD + E+ I +G+++FC+DL +DP VL++AWKF+
Sbjct: 53 RESMRNAVDK--KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFR 110
Query: 136 AATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEE 195
AAT C+F+RKEF DG + DS++ + A P L E K KFKD Y+FTF F
Sbjct: 111 AATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA--KNP 168
Query: 196 GQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGP 255
GQ+ L E+A+A WKLV + LD W FL E+ + I RDTWN+ L+F +I
Sbjct: 169 GQKGLDLEMAVAYWKLVLS-GRFKFLDLWNTFLMEHHK--RSIPRDTWNLLLDFGNMIAD 225
Query: 256 DLSNYSEDEAWPSLFDTFVEW 276
D+SNY E+ AWP L D FVE+
Sbjct: 226 DMSNYDEEGAWPVLIDDFVEY 246
>gi|36030883 RP42 homolog [Homo sapiens]
Length = 259
Score = 167 bits (422), Expect = 1e-41
Identities = 83/189 (43%), Positives = 122/189 (64%), Gaps = 6/189 (3%)
Query: 89 QRLEELFRRYKDER-EDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEF 147
++LE+L+ RYKD + E+ I +G+++FC+DL +DP VL++AWKF+AAT C+F+++EF
Sbjct: 63 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 122
Query: 148 FDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIA 207
DG + DSI+ + A+ P + E K+ +FKD Y+FTF F GQ+ L E+AIA
Sbjct: 123 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFA--KNPGQKGLDLEMAIA 180
Query: 208 LWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWP 267
W LV LD W FL E+ + I +DTWN+ L+F+ +I D+SNY E+ AWP
Sbjct: 181 YWNLVL-NGRFKFLDLWNKFLLEHHK--RSIPKDTWNLLLDFSTMIADDMSNYDEEGAWP 237
Query: 268 SLFDTFVEW 276
L D FVE+
Sbjct: 238 VLIDDFVEF 246
>gi|14150015 DCN1, defective in cullin neddylation 1, domain
containing 5 [Homo sapiens]
Length = 237
Score = 114 bits (284), Expect = 1e-25
Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 103 EDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGI 162
++ + EGME+FC D+ V+P +L+LAWK +A +M FT++E+ G ++ D + +
Sbjct: 62 DEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKL 121
Query: 163 CARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLD 222
+F L ++ FK++YR+ F F D + QRSL + A ++ L+ + P+
Sbjct: 122 QNKFDFLRSQLNDISSFKNIYRYAFDFARDKD--QRSLDIDTAKSMLALLLGR-TWPLFS 178
Query: 223 QWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERR 281
+ +L + S + +++D W L F++ + DLSNY ED AWP L D FVEW+ R+
Sbjct: 179 VFYQYLEQ--SKYRVMNKDQWYNVLEFSRTVHADLSNYDEDGAWPVLLDEFVEWQKVRQ 235
>gi|94536778 DCN1, defective in cullin neddylation 1, domain
containing 4 isoform 1 [Homo sapiens]
Length = 292
Score = 111 bits (278), Expect = 7e-25
Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Query: 80 KSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATM 139
K+ E S +R E F Y +D + EGME+FC D+ V+P +L+LAWK A M
Sbjct: 95 KTEEEAFSSKRCLEWFYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNM 153
Query: 140 CKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRS 199
FT +E+ G ++ D+ + + L + FK +YR+ F F E+ QRS
Sbjct: 154 GYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFA--REKDQRS 211
Query: 200 LHREIAIALWKLVFTQNNP--PVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDL 257
L A + L+ + P PV Q+L S K I++D W L F++ I DL
Sbjct: 212 LDINTAKCMLGLLLGKIWPLFPVFHQFL-----EQSKYKVINKDQWCNVLEFSRTINLDL 266
Query: 258 SNYSEDEAWPSLFDTFVEWEMERR 281
SNY ED AWP L D FVEW +++
Sbjct: 267 SNYDEDGAWPVLLDEFVEWYKDKQ 290
>gi|94536780 DCN1, defective in cullin neddylation 1, domain
containing 4 isoform 2 [Homo sapiens]
Length = 257
Score = 93.6 bits (231), Expect = 2e-19
Identities = 60/202 (29%), Positives = 87/202 (43%), Gaps = 41/202 (20%)
Query: 80 KSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATM 139
K+ E S +R E F Y +D + EGME+FC D+ V+P +L+LAWK A M
Sbjct: 95 KTEEEAFSSKRCLEWFYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNM 153
Query: 140 CKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRS 199
FT +E+ G ++ D+ + + L + FK +YR+ F F S+
Sbjct: 154 GYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFARQSK----- 208
Query: 200 LHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDLSN 259
K I++D W L F++ I DLSN
Sbjct: 209 -----------------------------------YKVINKDQWCNVLEFSRTINLDLSN 233
Query: 260 YSEDEAWPSLFDTFVEWEMERR 281
Y ED AWP L D FVEW +++
Sbjct: 234 YDEDGAWPVLLDEFVEWYKDKQ 255
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 33.5 bits (75), Expect = 0.24
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 23 EPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDAGRESKSN 82
E +++S + G R + PP K G + G +++ AAT + LP + G +
Sbjct: 3 EEASRSAAATNPGSRLTRWPPPDKREGSAVDPGKRRSLAATPSSSLPCTLIALGLRHEKE 62
Query: 83 AEESSLQRLEELFRRYKDEREDAILEE 109
A E +E+LF ++DE + +E+
Sbjct: 63 ANE----LMEDLFETFQDEMGFSNMED 85
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 32.7 bits (73), Expect = 0.41
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 7 KCKNPSSTLGS---KNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAAT 63
K N S GS K+G R S K +RG + P D + ++++++
Sbjct: 847 KRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAP------ADRKRQLSPQSKSSS 900
Query: 64 EACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAI 106
+ +P + D G S + + S+L R EEL ++ K EDAI
Sbjct: 901 KVTSVPGKASDPGAASTKSGKASTLSRREELLKQLK-AVEDAI 942
>gi|239755027 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 0.70
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 14 TLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP--TS 71
TLG +G E R G G P G PG + + AE + +LP
Sbjct: 101 TLGRADGSWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQ 160
Query: 72 SGDAGRESKSNAEES 86
+ D GR + N S
Sbjct: 161 TADRGRRTSGNGPTS 175
>gi|239749540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 0.70
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 14 TLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP--TS 71
TLG +G E R G G P G PG + + AE + +LP
Sbjct: 101 TLGRADGSWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQ 160
Query: 72 SGDAGRESKSNAEES 86
+ D GR + N S
Sbjct: 161 TADRGRRTSGNGPTS 175
>gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo
sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 0.70
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 14 TLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP--TS 71
TLG +G E R G G P G PG + + AE + +LP
Sbjct: 101 TLGRADGSWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQ 160
Query: 72 SGDAGRESKSNAEES 86
+ D GR + N S
Sbjct: 161 TADRGRRTSGNGPTS 175
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.0 bits (71), Expect = 0.70
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S SHSR G+ H PG + + +T+ LP
Sbjct: 3621 SPASTTSS--GVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 3678
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 3679 ASTTTSGSSQESTTSHSS 3696
Score = 31.6 bits (70), Expect = 0.91
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S SHSR G+ H PG + + +T+ LP
Sbjct: 2064 SPASTTSS--GVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 2121
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 2122 ASTTTSGPSQESTTSHSS 2139
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 6 TKCKNPSSTLG----SKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEA 61
T ++P +TL + +G E S+ SHS+ G+ H PG + +
Sbjct: 2528 TSPRSPDATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTPGLSRHSTTSHSSPG 2587
Query: 62 ATEACQLPTSSGDAGRESKSNAEESS 87
+T+ LP S+ +G +S SS
Sbjct: 2588 STDTTLLPASTTTSGPSQESTTSHSS 2613
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S S SR G+ H PG + + +T+ LP
Sbjct: 981 SPASTTSS--GVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 1038
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 1039 ASTTTSGPSQESTTSHSS 1056
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 31.6 bits (70), Expect = 0.91
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S SHSR G+ H PG + + +T+ LP
Sbjct: 140 SPASTTSS--GVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 197
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 198 ASTTTSGPSQESTTSHSS 215
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 31.6 bits (70), Expect = 0.91
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S SHSR G+ H PG + + +T+ LP
Sbjct: 34 SPASTTSS--GVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 91
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 92 ASTTTSGPSQESTTSHSS 109
>gi|116089333 kelch domain containing 7A [Homo sapiens]
Length = 777
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 CKNPSS----TLGSKNGDREPSNKS--HSRRGAGHREEQVPPC 44
C+NP G+ + DR+P K R G G EQVPPC
Sbjct: 97 CENPRGPYVLVTGATSTDRKPQRKGSGEERGGQGSDSEQVPPC 139
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 12 SSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTS 71
SS+ + D E K + G PP P L GT+ + A E Q S
Sbjct: 264 SSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSL--GTQPPKKAVEKQQPVES 321
Query: 72 SGDAGRESKSNAEE 85
S D+ ES S++EE
Sbjct: 322 SEDSSDESDSSSEE 335
Score = 29.6 bits (65), Expect = 3.5
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 11 PSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPT 70
PS +K G E SN S S + EE++ G P +A A L
Sbjct: 503 PSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSP--------RPQAPKANGTSALTA 554
Query: 71 SSGDAGRESKSNAEE 85
+G A + S+ EE
Sbjct: 555 QNGKAAKNSEEEEEE 569
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 11 PSSTLGSKNGDREPSNKSHSRRGAGHREEQ----------VPPC-GKPGGDILVNGTKKA 59
P+ST ++N P ++S SRR + Q VPP +P G G+KK
Sbjct: 1236 PASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGGSKKG 1295
Query: 60 EAATEACQLPTSSGDAG 76
Q T+ G AG
Sbjct: 1296 PRGKLQAQRATTKGRAG 1312
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 35 GHREEQVP-PCGKPGGDILVNGTKKAEAATEACQLPTSSGDA----GRESKSNAEESSLQ 89
G R P P G PGG + GT A + + TSS A G K SS
Sbjct: 280 GSRGPPTPAPPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSSTD 339
Query: 90 RLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLL 130
+ EL + ++ A L E + + P R LL
Sbjct: 340 QERELKEKQRNAEALAELSESLRNRAEEWASKPKMVRDTLL 380
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 30.0 bits (66), Expect = 2.6
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 16 GSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDA 75
GS G R+ + HS +GH G G + +A+ + SGD+
Sbjct: 3115 GSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDS 3174
Query: 76 GRESKSNAEESS 87
R S S E+S
Sbjct: 3175 SRHSVSRHHEAS 3186
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 16 GSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDA 75
GS G R+ + HS +GH G G + +A+ + SGD
Sbjct: 2791 GSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDG 2850
Query: 76 GRESKSNAEESS 87
R S S E+S
Sbjct: 2851 SRHSGSRHHEAS 2862
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 16 GSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDA 75
GS G R+ S+ S +GH G +G + +A+ + SGD
Sbjct: 521 GSSRGGRQGSHHEQSVNRSGHSGSHHSHTTSQGRSDASHGQSGSRSASRQTRNEEQSGDG 580
Query: 76 GRESKSNAEESSLQ 89
R S S E+S Q
Sbjct: 581 TRHSGSRHHEASSQ 594
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 16 GSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGDA 75
GS+ G R+ S S +GH G +G + +A+ + SGD
Sbjct: 3763 GSRRGGRQGSYHEQSVDRSGHSGSHHSHTTSQGRSDASHGQSGSRSASRETRNEEQSGDG 3822
Query: 76 GRESKSNAEESSLQ 89
R S S E+S Q
Sbjct: 3823 SRHSGSRHHEASTQ 3836
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 29.6 bits (65), Expect = 3.5
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 38/127 (29%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
N ST KNG R P S G + +E + C K G +L TE+ L
Sbjct: 2072 NVKSTFSKKNGTRSPPRPSPG--GLHYSDEDI--CNKYNGAVL----------TESVSLK 2117
Query: 70 TSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLL 129
S DA S+S A +S + EDA+ + F N DPT +
Sbjct: 2118 EKSADA---SESEATDS--------------DYEDALPKHS---FVNHYMSDPTYYN--- 2154
Query: 130 LAWKFQA 136
+WK +A
Sbjct: 2155 -SWKRRA 2160
>gi|239750483 PREDICTED: similar to zinc finger protein 165 [Homo
sapiens]
Length = 188
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 1 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGK 46
M C + KN + G K P++ SHS G + P CGK
Sbjct: 78 MQSCTVETKNKNHQSG-KTSAPPPNSGSHSSSTTGEKSHTCPKCGK 122
>gi|169205887 PREDICTED: similar to zinc finger protein 165 [Homo
sapiens]
Length = 188
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 1 MGQCVTKCKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGK 46
M C + KN + G K P++ SHS G + P CGK
Sbjct: 78 MQSCTVETKNKNHQSG-KTAAPPPNSGSHSSSTTGEKSHTCPKCGK 122
>gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens]
Length = 1079
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 79 SKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFR 126
+ N+E S+ + + ++Y E+E I EE ME FC+D TE+R
Sbjct: 401 NNENSEMSTEKSENTIIQKYNTEQE--IREENMENFCSD-----TEYR 441
>gi|149944593 hypothetical protein LOC23349 [Homo sapiens]
Length = 400
Score = 29.3 bits (64), Expect = 4.5
Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 53 VNGTKKAEAATEACQLPTSSGDAGRE---SKSNAEESSLQRLEEL--------FRRYKDE 101
V K+AEA T Q +S+G A E E R R+ D+
Sbjct: 55 VQEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDD 114
Query: 102 REDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGC 151
+ I E E ND D E W ++ C+ + F DGC
Sbjct: 115 KPPEICLEPREPVVNDEMCDVCE------VWTAESLFPCRVCTRVFHDGC 158
>gi|31543559 radial spoke 3 homolog [Homo sapiens]
Length = 560
Score = 28.9 bits (63), Expect = 5.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 78 ESKSNAEESSLQRLEELFRRYKDERE 103
E N+E + +QRLEE RR+++E+E
Sbjct: 350 EELRNSERAEVQRLEEQERRHREEKE 375
>gi|9966761 choroideremia isoform a [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 8 CKNPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQ 67
C P LG+ N ++ E+ PP P DI+++G A+E+
Sbjct: 575 CSGPDCGLGNDNAVKQAETLFQE---ICPNEDFCPPPPNPE-DIILDGDSLQPEASESSA 630
Query: 68 LPTSSGDAGRESKS--NAEESS 87
+P ++ + +ES + N EESS
Sbjct: 631 IPEANSETFKESTNLGNLEESS 652
>gi|190885493 hypothetical protein LOC84984 [Homo sapiens]
Length = 167
Score = 28.9 bits (63), Expect = 5.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 80 KSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTE 124
KS E+ SL++LE+LF + L E ME+ + +DP E
Sbjct: 63 KSYLEQVSLRQLEKLFSFLRGYLSGQSLAETMEQIQRETTIDPEE 107
>gi|239743649 PREDICTED: IQ motif and ankyrin repeat
domain-containing protein LOC642574 [Homo sapiens]
Length = 580
Score = 28.5 bits (62), Expect = 7.7
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 15 LGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLPTSSGD 74
L ++ G ++P RRGAG + P PG +A ++ C G
Sbjct: 29 LRARRGSQDPR-----RRGAGEVPADLGPLRVPGS--------RAASSCGLCGREPRLGR 75
Query: 75 AGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDL 118
AG AE+ + + ++ FR+ + RE A E + +
Sbjct: 76 AGGFESRPAEDRAARAIQGAFRQLRARRELARRREERREYLEQM 119
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 10 NPSSTLGSKNGDREPSNKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKAEAATEACQLP 69
+P+ST S G E S S SR G+ H PG + + +T+ LP
Sbjct: 468 SPASTTSS--GVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLP 525
Query: 70 TSSGDAGRESKSNAEESS 87
S+ +G +S SS
Sbjct: 526 ASTTTSGPSQESTTSHSS 543
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 5 VTKCKNPSSTLGSKNGDREPS-----NKSHSRRGAGHREEQVPPCGKPGGDILVNGTKKA 59
+T + S L SK ++ +K+ +++ + EE +P GD +KK
Sbjct: 403 ITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDADSEPKGD-----SKKG 457
Query: 60 EAATEACQLPTSSGDAGRESKSNAEESSLQRLEELFRRYKDERE 103
+ + + + D +++K NAE + ++ EL + K +E
Sbjct: 458 KKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKHSKE 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,335,259
Number of Sequences: 37866
Number of extensions: 629525
Number of successful extensions: 2360
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2302
Number of HSP's gapped (non-prelim): 68
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.