Guide to the Human Genome
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Name: LOC100132598 Sequence: fasta or formatted (188aa) NCBI GI: 239750483
Description:

PREDICTED: similar to zinc finger protein 165

Not currently referenced in the text

Other entries for this name:
alt prot {188aa} PREDICTED: similar to zinc finger protein 165
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          6           1
 C cysteine            3.7          7           1
 D aspartate           1.6          3           1
 E glutamate           5.3         10           1
 F phenylalanine       3.7          7           1
 G glycine             4.8          9           1
 H histidine           8.0         15           2
 I isoleucine          4.8          9           1
 K lysine             11.2         21           2
 L leucine             3.7          7           1
 M methionine          3.2          6           1
 N asparagine          8.0         15           2
 P proline             3.7          7           3
 Q glutamine           3.7          7           1
 R arginine            4.3          8           1
 S serine             10.6         20           3
 T threonine           6.9         13           2
 V valine              4.8          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            3.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 165 [Homo... 
LOC100132598          0.997   PREDICTED: similar to zinc finger protein 165 [Homo...
LOC100132509          0.947   PREDICTED: hypothetical protein LOC100132509 
LOC100132509          0.942   PREDICTED: similar to hCG2001192 
LOC100132509          0.934   PREDICTED: similar to hCG2001192 
ZNF114                0.553   zinc finger protein 114 
ZNF317                0.220   zinc finger protein 317 
ZNF214                0.220   zinc finger protein 214 
ZFP37                 0.214   zinc finger protein 37 homolog 
ZNF79                 0.209   zinc finger protein 79 
ZNF43                 0.209   zinc finger protein 43 
ZNF559                0.206   zinc finger protein 559 
ZNF555                0.206   zinc finger protein 555 
ZNF184                0.204   zinc finger protein 184 
ZNF329                0.201   zinc finger protein 329 
ZNF347                0.198   zinc finger protein 347 
ZNF254                0.198   zinc finger protein 254 
ZNF502                0.198   zinc finger protein 502 
ZNF502                0.198   zinc finger protein 502 
ZNF502                0.198   zinc finger protein 502 
ZNF502                0.198   zinc finger protein 502 
ZNF665                0.198   zinc finger protein 665 
ZNF486                0.198   zinc finger protein 486 
ZNF135                0.198   zinc finger protein 135 
ZNF480                0.196   zinc finger protein 480 
ZNF558                0.196   zinc finger protein 558 
ZNF585A               0.196   zinc finger protein 585A 
ZNF585A               0.196   zinc finger protein 585A 
ZNF91                 0.196   zinc finger protein 91 
ZNF586                0.196   zinc finger protein 586 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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