Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27734929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734929 cyclic nucleotide binding domain containing 1 [Homo
sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734929 cyclic nucleotide binding domain containing 1 [Homo ... 885 0.0
gi|18201890 hypothetical protein LOC140894 [Homo sapiens] 47 4e-05
gi|38257139 protein kinase, cAMP-dependent, regulatory, type I, ... 41 0.002
gi|148727335 patatin-like phospholipase domain containing 7 isof... 31 1.9
gi|148727290 patatin-like phospholipase domain containing 7 isof... 31 1.9
gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isof... 30 3.3
gi|45267826 cytochrome P450, family 2, subfamily R, polypeptide ... 30 4.3
gi|222352141 DTW domain containing 1 [Homo sapiens] 30 5.6
gi|32563567 DTW domain containing 1 [Homo sapiens] 30 5.6
gi|22547161 frizzled 4 [Homo sapiens] 30 5.6
gi|103471999 serine/threonine kinase 3 [Homo sapiens] 30 5.6
gi|13540549 potassium voltage-gated channel, subfamily H, member... 30 5.6
gi|27886651 potassium voltage-gated channel, subfamily H, member... 30 5.6
gi|41352697 centromere protein I [Homo sapiens] 29 7.3
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 29 9.6
gi|238814387 zinc finger, MYND domain containing 11 isoform b [H... 29 9.6
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 29 9.6
gi|206597470 neural precursor cell expressed, developmentally do... 29 9.6
gi|206597468 neural precursor cell expressed, developmentally do... 29 9.6
gi|23097254 neural precursor cell expressed, developmentally dow... 29 9.6
gi|206597465 neural precursor cell expressed, developmentally do... 29 9.6
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 29 9.6
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 29 9.6
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens] 29 9.6
gi|45439370 TAO kinase 1 [Homo sapiens] 29 9.6
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 29 9.6
>gi|27734929 cyclic nucleotide binding domain containing 1 [Homo
sapiens]
Length = 436
Score = 885 bits (2287), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MPMSSLPAAILSHMTAINNVPPPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNIL 60
MPMSSLPAAILSHMTAINNVPPPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNIL
Sbjct: 1 MPMSSLPAAILSHMTAINNVPPPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNIL 60
Query: 61 SAHDTFMKQYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHG 120
SAHDTFMKQYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHG
Sbjct: 61 SAHDTFMKQYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHG 120
Query: 121 GHILYRPKRATEKFEEFLAILKKLPIHRTPYEHKTVWKFLKTIPDLTFQLNDKHLKTLSK 180
GHILYRPKRATEKFEEFLAILKKLPIHRTPYEHKTVWKFLKTIPDLTFQLNDKHLKTLSK
Sbjct: 121 GHILYRPKRATEKFEEFLAILKKLPIHRTPYEHKTVWKFLKTIPDLTFQLNDKHLKTLSK 180
Query: 181 TVFSETWLKGSTVVANDGFYVILKGLARPQTNVYKNLIEGSDSPDSFISQSFHSFIWSEE 240
TVFSETWLKGSTVVANDGFYVILKGLARPQTNVYKNLIEGSDSPDSFISQSFHSFIWSEE
Sbjct: 181 TVFSETWLKGSTVVANDGFYVILKGLARPQTNVYKNLIEGSDSPDSFISQSFHSFIWSEE 240
Query: 241 FKNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMFSVVTEDDCEILKIPAKGYAK 300
FKNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMFSVVTEDDCEILKIPAKGYAK
Sbjct: 241 FKNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMFSVVTEDDCEILKIPAKGYAK 300
Query: 301 IKEEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVG 360
IKEEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVG
Sbjct: 301 IKEEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVG 360
Query: 361 YINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTIITK 420
YINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTIITK
Sbjct: 361 YINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTIITK 420
Query: 421 KEVEMAIIEDKDLFVA 436
KEVEMAIIEDKDLFVA
Sbjct: 421 KEVEMAIIEDKDLFVA 436
>gi|18201890 hypothetical protein LOC140894 [Homo sapiens]
Length = 572
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/131 (19%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 242 KNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMFSVVTEDDCEILKIPAKGYAKI 301
K+ + +L + +L K S FG ++V+ + + ++V ++ E L + + +
Sbjct: 165 KDEDGSSAFLDPHPKLLHKGSCFGEMDVL---HASVRRSTIVCMEETEFLVVDREDFFAN 221
Query: 302 K-EEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVG 360
K +++++ + + + R + W +++L+A+ K ++F G +I + F+
Sbjct: 222 KLDQEVQKDAQYRFEFFRKMELFASWSDEKLWQLVAMAKIERFSYGQLISKDFGESPFIM 281
Query: 361 YINSGCCNIYR 371
+I+ G C + R
Sbjct: 282 FISKGSCEVLR 292
>gi|38257139 protein kinase, cAMP-dependent, regulatory, type I,
beta [Homo sapiens]
Length = 381
Score = 41.2 bits (95), Expect = 0.002
Identities = 75/367 (20%), Positives = 142/367 (38%), Gaps = 87/367 (23%)
Query: 71 PKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDS-----NNIAVHVQRAHGGHILY 125
P FL + KL K+E ++ L K SQ D+ N V +R GG
Sbjct: 46 PMKFLRE--HFEKLEKEENRQILARQKSNSQSDSHDEEVSPTPPNPVVKARRRRGG---V 100
Query: 126 RPKRATEKFEEFLAILKKLPIHRTPYEHKTVWKFLKTIPD--LTFQLNDKHLKTLSKTVF 183
+ TE E+ ++ ++K+ P ++KT+ K I L L+D + +F
Sbjct: 101 SAEVYTE--EDAVSYVRKV----IPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMF 154
Query: 184 SETWLKGSTVVAN----DGFYVILKGLARPQTNVYKNLIEGSDSPDSFISQSFHSFIWSE 239
T + G TV+ D FYV+ +G + +VY N
Sbjct: 155 PVTHIAGETVIQQGNEGDNFYVVDQG----EVDVYVN----------------------- 187
Query: 240 EFKNSTLAEMYLPSYDSMLSKWSTFGTLEVMPQNESETQMFSVVTEDDCEILKIPAKGYA 299
+ + +S+ +FG L ++ + +V + D ++ I Y
Sbjct: 188 ------------GEWVTNISEGGSFGELALI---YGTPRAATVKAKTDLKLWGIDRDSYR 232
Query: 300 KI------KEEKIKLENMQKLKLIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESG 353
+I ++ K+ E + K+ ++ E+W L++ + + ++ F G IV G
Sbjct: 233 RILMGSTLRKRKMYEEFLSKVSILESL---EKWERLTVADALEPVQ---FEDGEKIVVQG 286
Query: 354 NIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPF 413
I G ++ + + +++ V +G+L + FGEI++LL P
Sbjct: 287 EPGDDFYIITEGTASVLQ-----------RRSPNEEYVEVGRLGPSDYFGEIALLLNRPR 335
Query: 414 TCTIITK 420
T++ +
Sbjct: 336 AATVVAR 342
>gi|148727335 patatin-like phospholipase domain containing 7 isoform
a [Homo sapiens]
Length = 1342
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 66 FMKQYPKVFLH-QKPRLPKLFKQEEQRELNEGKEESQHQQPDDS------NNIAVHVQRA 118
+M + +V H +KP +L K +L EG+ Q ++PD S + V +Q
Sbjct: 163 YMLKNVRVLGHFEKPLFLELCKHIVFVQLQEGEHVFQPREPDPSICVVQDGRLEVCIQDT 222
Query: 119 HGGHILYRPKRATEKFEEFLAILKKLPIHRTPYEHKTV 156
G ++ + A + L+IL + H PY+ +V
Sbjct: 223 DGTEVVVKEVLAGDSVHSLLSILDIITGHAAPYKTVSV 260
>gi|148727290 patatin-like phospholipase domain containing 7 isoform
b [Homo sapiens]
Length = 1317
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 66 FMKQYPKVFLH-QKPRLPKLFKQEEQRELNEGKEESQHQQPDDS------NNIAVHVQRA 118
+M + +V H +KP +L K +L EG+ Q ++PD S + V +Q
Sbjct: 138 YMLKNVRVLGHFEKPLFLELCKHIVFVQLQEGEHVFQPREPDPSICVVQDGRLEVCIQDT 197
Query: 119 HGGHILYRPKRATEKFEEFLAILKKLPIHRTPYEHKTV 156
G ++ + A + L+IL + H PY+ +V
Sbjct: 198 DGTEVVVKEVLAGDSVHSLLSILDIITGHAAPYKTVSV 235
>gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isoform
a [Homo sapiens]
Length = 1011
Score = 30.4 bits (67), Expect = 3.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 368 NIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTIITKKEVEMAI 427
N Y + G + ++ ++ Q V + L +FGE S+L P TI+T++ E+
Sbjct: 79 NWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLR 137
Query: 428 IEDKD 432
IE KD
Sbjct: 138 IEQKD 142
>gi|45267826 cytochrome P450, family 2, subfamily R, polypeptide 1
[Homo sapiens]
Length = 501
Score = 30.0 bits (66), Expect = 4.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 50 GQHSRSMSNILSAHDTFMKQYPKVFLHQKPRLPKLFKQEEQRELNEGKEE 99
G+H + N +D + K +++KP+LP+ F E+++GK +
Sbjct: 241 GKHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGKND 290
>gi|222352141 DTW domain containing 1 [Homo sapiens]
Length = 304
Score = 29.6 bits (65), Expect = 5.6
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 170 LNDKHLK--TLSKTVFSE-TWLKGSTVVANDGFYVILKGLARPQTNVYKNLI--EGSDSP 224
LND K TL K +F + TW + + + ++ L+GL + + K P
Sbjct: 189 LNDSKCKGTTLKKIIFIDSTWNQTNKIFTDER----LQGLLQVELKTRKTCFWRHQKGKP 244
Query: 225 DSFISQSFHSFIWSEEFKNSTLAEMYLPSYDSMLSKWS 262
D+F+S + + ++ L E Y YD++L +S
Sbjct: 245 DTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYS 282
>gi|32563567 DTW domain containing 1 [Homo sapiens]
Length = 304
Score = 29.6 bits (65), Expect = 5.6
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 170 LNDKHLK--TLSKTVFSE-TWLKGSTVVANDGFYVILKGLARPQTNVYKNLI--EGSDSP 224
LND K TL K +F + TW + + + ++ L+GL + + K P
Sbjct: 189 LNDSKCKGTTLKKIIFIDSTWNQTNKIFTDER----LQGLLQVELKTRKTCFWRHQKGKP 244
Query: 225 DSFISQSFHSFIWSEEFKNSTLAEMYLPSYDSMLSKWS 262
D+F+S + + ++ L E Y YD++L +S
Sbjct: 245 DTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYS 282
>gi|22547161 frizzled 4 [Homo sapiens]
Length = 537
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 361 YINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESFGEISVLLQVPFTCTI 417
Y+ G I ++ K+RSN K K + +L K G SVL VP TC I
Sbjct: 398 YLVIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVK--IGVFSVLYTVPATCVI 452
>gi|103471999 serine/threonine kinase 3 [Homo sapiens]
Length = 491
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 7 PAAILSHMTAINNVP--PPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNILSAHD 64
P A + M AI +P PPP P L ++ + C ++ R+ + L H
Sbjct: 220 PYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKK---CLVKNPEQRATATQLLQHP 276
Query: 65 TFMKQYPKVFLH----QKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQ 116
P L + + +E+QREL E +E S + D + V+
Sbjct: 277 FIKNAKPVSILRDLITEAMEIKAKRHEEQQRELEEEEENSDEDELDSHTMVKTSVE 332
>gi|13540549 potassium voltage-gated channel, subfamily H, member 6
isoform 1 [Homo sapiens]
Length = 994
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 316 LIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVGYINSGCCNIYRSIIG 375
L++ CP + + L K PPG +V G+++S + +I+ G I R +
Sbjct: 588 LLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRGSIEILRDDVV 647
Query: 376 FVKLRSNKV 384
L N +
Sbjct: 648 VAILGKNDI 656
>gi|27886651 potassium voltage-gated channel, subfamily H, member 6
isoform 2 [Homo sapiens]
Length = 905
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 316 LIRMCPYYEEWPTLSIYELIALLKWKKFPPGHVIVESGNIISFVGYINSGCCNIYRSIIG 375
L++ CP + + L K PPG +V G+++S + +I+ G I R +
Sbjct: 535 LLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRGSIEILRDDVV 594
Query: 376 FVKLRSNKV 384
L N +
Sbjct: 595 VAILGKNDI 603
>gi|41352697 centromere protein I [Homo sapiens]
Length = 756
Score = 29.3 bits (64), Expect = 7.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 103 QQPDDSNNIAVHVQRAHGGHILYRPKRATEK-FEEFLAILKKLPIHRTPYEHKTVWKFLK 161
Q P +S NI+ H Q G + +A E + + +K PI + + KT+ K LK
Sbjct: 34 QDPSNSKNISKHGQNNPVGDYEHADDQAEEDALQMAVGYFEKGPIKASQNKDKTLEKHLK 93
Query: 162 TIPDLTFQ 169
T+ ++ ++
Sbjct: 94 TVENVAWK 101
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 69 QYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHGGHILYRPK 128
+Y K+F K R+ K+E +R + E E+ + + ++ G + + K
Sbjct: 470 KYTKIFNDFKDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCK 529
Query: 129 RATEKF-EEFLAILKKL 144
+ EK EEF+ +KKL
Sbjct: 530 QVKEKCKEEFVEEIKKL 546
>gi|238814387 zinc finger, MYND domain containing 11 isoform b [Homo
sapiens]
Length = 567
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 69 QYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHGGHILYRPK 128
+Y K+F K R+ K+E +R + E E+ + + ++ G + + K
Sbjct: 469 KYTKIFNDFKDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCK 528
Query: 129 RATEKF-EEFLAILKKL 144
+ EK EEF+ +KKL
Sbjct: 529 QVKEKCKEEFVEEIKKL 545
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 69 QYPKVFLHQKPRLPKLFKQEEQRELNEGKEESQHQQPDDSNNIAVHVQRAHGGHILYRPK 128
+Y K+F K R+ K+E +R + E E+ + + ++ G + + K
Sbjct: 470 KYTKIFNDFKDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCK 529
Query: 129 RATEKF-EEFLAILKKL 144
+ EK EEF+ +KKL
Sbjct: 530 QVKEKCKEEFVEEIKKL 546
>gi|206597470 neural precursor cell expressed, developmentally
down-regulated 1 isoform c [Homo sapiens]
Length = 571
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 343 FPPGHVIVESGNIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESF 402
FPP + S ++S N++ G + + + K +YMGK + K+SF
Sbjct: 354 FPP-----RKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQESKDSF 408
Query: 403 GEISVLL 409
+++ L+
Sbjct: 409 KQLAKLV 415
>gi|206597468 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 343 FPPGHVIVESGNIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESF 402
FPP + S ++S N++ G + + + K +YMGK + K+SF
Sbjct: 443 FPP-----RKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQESKDSF 497
Query: 403 GEISVLL 409
+++ L+
Sbjct: 498 KQLAKLV 504
>gi|23097254 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 343 FPPGHVIVESGNIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESF 402
FPP + S ++S N++ G + + + K +YMGK + K+SF
Sbjct: 443 FPP-----RKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQESKDSF 497
Query: 403 GEISVLL 409
+++ L+
Sbjct: 498 KQLAKLV 504
>gi|206597465 neural precursor cell expressed, developmentally
down-regulated 1 isoform a [Homo sapiens]
Length = 667
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 343 FPPGHVIVESGNIISFVGYINSGCCNIYRSIIGFVKLRSNKVKRSQKLVYMGKLKEKESF 402
FPP + S ++S N++ G + + + K +YMGK + K+SF
Sbjct: 450 FPP-----RKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGKQESKDSF 504
Query: 403 GEISVLL 409
+++ L+
Sbjct: 505 KQLAKLV 511
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 28.9 bits (63), Expect = 9.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 2 PMSSLPAAILSHMTAINNVPPPPLHSIPNLKKS----KHINYGQLNALCHIRGQHSRSM 56
P S LP+A S ++PP PL P+ ++S KH + + H RG+ RS+
Sbjct: 189 PSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGRGERHRSL 247
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 28.9 bits (63), Expect = 9.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 2 PMSSLPAAILSHMTAINNVPPPPLHSIPNLKKS----KHINYGQLNALCHIRGQHSRSM 56
P S LP+A S ++PP PL P+ ++S KH + + H RG+ RS+
Sbjct: 189 PSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGRGERHRSL 247
>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 9.6
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 55 SMSNILSAHDTFMKQYPKVFLHQ----KPRLPKLFKQEEQRELNEGKEESQHQQPDD--- 107
SMS D +K + K FLHQ + KL K + QR ++ + DD
Sbjct: 37 SMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWES 96
Query: 108 ---SNNIAVHVQRAHGGHILYRPKRATEKFEEFL 138
+ A+H+++ +L K AT+K + L
Sbjct: 97 GLNAMECALHLEKNVNQSLLELHKLATDKNDPHL 130
>gi|45439370 TAO kinase 1 [Homo sapiens]
Length = 1001
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 26 HSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNILSAHDT---FMKQYPKVFLHQKPRLP 82
H K++K ++ + HI+ Q + +++ L + K+ K L++ P
Sbjct: 518 HQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRKEQLKEELNENQSTP 577
Query: 83 KLFKQEEQRELNEGKEESQHQQPDDSNNI 111
K +E+Q L++ KE QH Q ++ N+
Sbjct: 578 K---KEKQEWLSKQKENIQHFQAEEEANL 603
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 28.9 bits (63), Expect = 9.6
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 3 MSSLPAAILSHMTAINNVPPPPLHSIPNLKKSKHINYGQLNALCHIRGQHSRSMSNILSA 62
+S +P L M A N LH + ++SK ++ N C ++ R M
Sbjct: 1050 VSQVPQGHLQSMPAGNMRASQELHDLMAARRSKLVHEEPRNPNCQGSCKNQRPM------ 1103
Query: 63 HDTFMKQYPKVFLHQKPRLPKLFKQEEQRE 92
+P + +K R P L K EE+ E
Sbjct: 1104 -------FPPIHKSEKSRKPNLEKHEERLE 1126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,124,461
Number of Sequences: 37866
Number of extensions: 756216
Number of successful extensions: 2596
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2586
Number of HSP's gapped (non-prelim): 34
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.