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Search of human proteins with 27734861
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734861 hypothetical protein LOC222826 [Homo sapiens]
(508 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734861 hypothetical protein LOC222826 [Homo sapiens] 1046 0.0
gi|32698752 hypothetical protein LOC63939 [Homo sapiens] 48 2e-05
gi|189491742 ataxin 7 isoform b [Homo sapiens] 35 0.16
gi|4506797 ataxin 7 isoform a [Homo sapiens] 35 0.16
gi|62821787 COBL-like 1 [Homo sapiens] 35 0.16
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso... 33 0.47
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 33 0.47
gi|122937227 U2-associated SR140 protein [Homo sapiens] 33 0.80
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 32 1.4
gi|15451916 bone morphogenetic protein receptor type II precurso... 31 2.3
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 31 2.3
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 31 2.3
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 31 2.3
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 4.0
gi|150418007 RAN binding protein 2 [Homo sapiens] 30 5.2
gi|47519562 reticulon 4 isoform E [Homo sapiens] 30 5.2
gi|24431935 reticulon 4 isoform A [Homo sapiens] 30 5.2
gi|239757222 PREDICTED: zinc finger protein 726 [Homo sapiens] 30 5.2
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens] 30 5.2
gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo... 30 5.2
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo... 30 5.2
gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo... 30 5.2
gi|74271888 lipin 3 [Homo sapiens] 30 5.2
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 30 5.2
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 30 6.8
gi|155030242 WD repeat domain 60 [Homo sapiens] 30 6.8
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 29 8.8
gi|59823631 G protein-coupled receptor 125 [Homo sapiens] 29 8.8
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 29 8.8
gi|31791006 keratin associated protein 13-2 [Homo sapiens] 29 8.8
>gi|27734861 hypothetical protein LOC222826 [Homo sapiens]
Length = 508
Score = 1046 bits (2705), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MGRRNENCANSLRVSNISQENLSHWNLDSEVPVSENKNLPAGRDGAAGGKINKNYLEIPV 60
MGRRNENCANSLRVSNISQENLSHWNLDSEVPVSENKNLPAGRDGAAGGKINKNYLEIPV
Sbjct: 1 MGRRNENCANSLRVSNISQENLSHWNLDSEVPVSENKNLPAGRDGAAGGKINKNYLEIPV 60
Query: 61 EQLMLEPNLSVHSQKSTQNSKQGIFQLWNCPLNEGSTIEKREFKKSSVETGFNVINHPIR 120
EQLMLEPNLSVHSQKSTQNSKQGIFQLWNCPLNEGSTIEKREFKKSSVETGFNVINHPIR
Sbjct: 61 EQLMLEPNLSVHSQKSTQNSKQGIFQLWNCPLNEGSTIEKREFKKSSVETGFNVINHPIR 120
Query: 121 VFTLNHPLTIASVDKQVGPYPGLPMPLGLCWPYADGDFFKNRNEIHVSSCSTIENNDGET 180
VFTLNHPLTIASVDKQVGPYPGLPMPLGLCWPYADGDFFKNRNEIHVSSCSTIENNDGET
Sbjct: 121 VFTLNHPLTIASVDKQVGPYPGLPMPLGLCWPYADGDFFKNRNEIHVSSCSTIENNDGET 180
Query: 181 LPAPNWNLKHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKPETIKNVEEPFTE 240
LPAPNWNLKHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKPETIKNVEEPFTE
Sbjct: 181 LPAPNWNLKHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKPETIKNVEEPFTE 240
Query: 241 EPNEVFPYPDFLPPPFSALDLHNLALSKSDNWKVTVDPAETSVEHLITRLLELERLQHMT 300
EPNEVFPYPDFLPPPFSALDLHNLALSKSDNWKVTVDPAETSVEHLITRLLELERLQHMT
Sbjct: 241 EPNEVFPYPDFLPPPFSALDLHNLALSKSDNWKVTVDPAETSVEHLITRLLELERLQHMT 300
Query: 301 IQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSC 360
IQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSC
Sbjct: 301 IQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSC 360
Query: 361 KLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTI 420
KLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTI
Sbjct: 361 KLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTI 420
Query: 421 GHTNQSMVKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLN 480
GHTNQSMVKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLN
Sbjct: 421 GHTNQSMVKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLN 480
Query: 481 RPFSIQKLNCLSPSLIAKDKCCSPIEQK 508
RPFSIQKLNCLSPSLIAKDKCCSPIEQK
Sbjct: 481 RPFSIQKLNCLSPSLIAKDKCCSPIEQK 508
>gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
Length = 383
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 195 VEENFTDES--DLSENEKTNDTLLSYFKKVDLNLKPETIKNVE---EPFTEEPNEVFPYP 249
++EN ++S DLS++E+ S DLNL+ E I V P + YP
Sbjct: 85 IKENADEDSASDLSDSERI-PIPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEYYYP 143
Query: 250 DFLPPPFSALDLHNLA-LSKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPR 307
+FLP PFS+ DL ++A L ++N V + I RL++LE LQ T+Q E+ +
Sbjct: 144 NFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKYIDRLIQLEWLQVQTVQCEKAK 202
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 307 RLQTTFCTPAVTERPSSSKATPKVRQP-KLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQN 365
++ ++ +P+ SS ++P R+P KL S SL+ ++S NS +C QN
Sbjct: 645 QVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLR-------PKESSGNSTNC---QN 694
Query: 366 ALKRNWSNAGKYRWNSRPL------SLKSSSTPKQLIETYDKN 402
A +GK R NS PL S SSS+ +E++ KN
Sbjct: 695 ASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKN 737
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 307 RLQTTFCTPAVTERPSSSKATPKVRQP-KLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQN 365
++ ++ +P+ SS ++P R+P KL S SL+ ++S NS +C QN
Sbjct: 645 QVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLR-------PKESSGNSTNC---QN 694
Query: 366 ALKRNWSNAGKYRWNSRPL------SLKSSSTPKQLIETYDKN 402
A +GK R NS PL S SSS+ +E++ KN
Sbjct: 695 ASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKN 737
>gi|62821787 COBL-like 1 [Homo sapiens]
Length = 1166
Score = 35.0 bits (79), Expect = 0.16
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 21/170 (12%)
Query: 303 KERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSL--------QIPCVDKSQEKSK 354
K +P L+T P+ P + +P PK+ +I + +S+ KS+
Sbjct: 835 KPKPNLRTEHQVPSSVSSPDDAMVSPLKPAPKMTRDTGTAPFAPNLEEINNILESKFKSR 894
Query: 355 NNSGSCKLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQEL 414
++ K L+ +G Y ++ S+ ++ P T + + + SP Q L
Sbjct: 895 ASNAQAKPSSFFLQMQKRVSGHYVTSAAAKSVHAAPNPAPKELTNKEAERDMLPSPEQTL 954
Query: 415 SF---------KPTIGHTNQSMVKMISTRCLPWRSPMPVSPIPLTFPENQ 455
S +P + T+ ++ SP P++P P+T P +Q
Sbjct: 955 SPLSKMPHSVPQPLVEKTDDDVIGQAPAEA----SPPPIAPKPVTIPASQ 1000
>gi|225543215 antigen identified by monoclonal antibody Ki-67 isoform
2 [Homo sapiens]
Length = 2896
Score = 33.5 bits (75), Expect = 0.47
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 34/188 (18%)
Query: 308 LQTTFCTPAVTERPSSSKATPKV---RQPKLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQ 364
L+ F TP T++P++ + T K+ QP D+ P K Q K + E
Sbjct: 1110 LKELFQTPVCTDKPTTHEKTTKIACRSQPDPVDT-----PTSSKPQSKRSLRKVDVEEEF 1164
Query: 365 NALKRNWSNAGKYRWNSRPLSLKSSS------TPKQLIETYD---------KNPKSSILS 409
AL++ +AGK +P + TP Q ++ + + PK +
Sbjct: 1165 FALRKRTPSAGKAMHTPKPAVSGEKNIYAFMGTPVQKLDLTENLTGSKRRLQTPKEKAQA 1224
Query: 410 PCQELSFK---PTIGHTNQSMV--KMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKR 464
FK T GHT +SM K C P P P + K +K
Sbjct: 1225 LEDLAGFKELFQTRGHTEESMTNDKTAKVAC------KSSQPDPDKNPASSKRRLKTSLG 1278
Query: 465 NFGTKKKL 472
G K++L
Sbjct: 1279 KVGVKEEL 1286
>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
1 [Homo sapiens]
Length = 3256
Score = 33.5 bits (75), Expect = 0.47
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 34/188 (18%)
Query: 308 LQTTFCTPAVTERPSSSKATPKV---RQPKLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQ 364
L+ F TP T++P++ + T K+ QP D+ P K Q K + E
Sbjct: 1470 LKELFQTPVCTDKPTTHEKTTKIACRSQPDPVDT-----PTSSKPQSKRSLRKVDVEEEF 1524
Query: 365 NALKRNWSNAGKYRWNSRPLSLKSSS------TPKQLIETYD---------KNPKSSILS 409
AL++ +AGK +P + TP Q ++ + + PK +
Sbjct: 1525 FALRKRTPSAGKAMHTPKPAVSGEKNIYAFMGTPVQKLDLTENLTGSKRRLQTPKEKAQA 1584
Query: 410 PCQELSFK---PTIGHTNQSMV--KMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKR 464
FK T GHT +SM K C P P P + K +K
Sbjct: 1585 LEDLAGFKELFQTRGHTEESMTNDKTAKVAC------KSSQPDPDKNPASSKRRLKTSLG 1638
Query: 465 NFGTKKKL 472
G K++L
Sbjct: 1639 KVGVKEEL 1646
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 32.7 bits (73), Expect = 0.80
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 33/250 (13%)
Query: 177 DGETLPAPNWNL--KHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKPETIKNV 234
+ + + W L +H S EEN E E+E DT S ++ L P +
Sbjct: 770 EAQAVTTSKWELFDQHEESEEEENQNQEE---ESEDEEDTQSSKSEEHHLYSNP-----I 821
Query: 235 EEPFTEEPNEVFPYPDFLPPPFSALDLHNLALSKS----DNWKVTVDPAET---SVEHLI 287
+E TE ++ Y + + L L + K ++ K P ++ VEH
Sbjct: 822 KEEMTE--SKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYR 879
Query: 288 TRLLELERLQHMTIQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVD 347
+LL+ E+ + + ++ER + ++ + TP ++ K S S P
Sbjct: 880 DKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTS---PSPS 936
Query: 348 KSQEKSKNNSGSCKLE-----QNALKRNWSNAGKYRWNSRPLSLKS------SSTPKQLI 396
+S + S S K E + + K + + ++ + R +S K+ S TPK+
Sbjct: 937 RSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRSR 996
Query: 397 ETYDKNPKSS 406
+ ++PK S
Sbjct: 997 RSRSRSPKKS 1006
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 32.0 bits (71), Expect = 1.4
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 381 SRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTIGHTNQSMVKMISTRCLPWRS 440
SRP + K+SS + + P S+ ++ + L KP NQ +++ S + PWR
Sbjct: 810 SRPSAYKTSSC-----SSLQREPVSTAVTSLRSLP-KPQ----NQFLIQDFSLQPRPWRK 859
Query: 441 PM---PVSPIPLTFPENQKEEIKAPKR 464
P PV P+T E Q+ E +A KR
Sbjct: 860 PTVPEPVMSTPIT--EEQRPEREAMKR 884
>gi|15451916 bone morphogenetic protein receptor type II precursor
[Homo sapiens]
Length = 1038
Score = 31.2 bits (69), Expect = 2.3
Identities = 50/252 (19%), Positives = 92/252 (36%), Gaps = 36/252 (14%)
Query: 244 EVFPYPDFLPPPFSALDLHNL-ALSKSDNWKVTVDPAETSVEHLITRLLELERLQHM--- 299
++ PYPD+ + +H+ ++ K+ + + ++ ++ + ER Q
Sbjct: 539 KIGPYPDYSSSSYIEDSIHHTDSIVKNISSEHSMSSTPLTIGEKNRNSINYERQQAQARI 598
Query: 300 --------TIQKERPRLQTTFCTPAVTERPSSSKATP---KVRQPKLCDSLSLQIPCVDK 348
++ TT TP+ S P + + S+ C+
Sbjct: 599 PSPETSVTSLSTNTTTTNTTGLTPSTGMTTISEMPYPDETNLHTTNVAQSIGPTPVCLQL 658
Query: 349 SQEKSKNNSGSCKLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSIL 408
++E + N KL+ + +N + N SLK S P L T SS+L
Sbjct: 659 TEEDLETN----KLDPKEVDKNLKESSDE--NLMEHSLKQFSGPDPLSST-----SSSLL 707
Query: 409 SPCQELSFKPTIGHTNQSMVKMISTRCLPWRSPMPVSPIP---------LTFPENQKEEI 459
P +L+ + T G + + +P P + P+P + P N K
Sbjct: 708 YPLIKLAVEAT-GQQDFTQTANGQACLIPDVLPTQIYPLPKQQNLPKRPTSLPLNTKNST 766
Query: 460 KAPKRNFGTKKK 471
K P+ FG+K K
Sbjct: 767 KEPRLKFGSKHK 778
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 31.2 bits (69), Expect = 2.3
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 5/161 (3%)
Query: 321 PSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQNALKRNWSNAGKYRWN 380
PS S TP++R S+ K K S +C N + S A
Sbjct: 139 PSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTC----NLFPASKSPASSPLTR 194
Query: 381 SRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTIGHTNQSMVKMISTRCLPWRS 440
S P ++ + P P S+L+P S + + K S +P
Sbjct: 195 STP-PVRGRAGPSGRAAASPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAI 253
Query: 441 PMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLNR 481
P P S +PLT P + T+K L R + +R
Sbjct: 254 PRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 294
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 31.2 bits (69), Expect = 2.3
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 5/161 (3%)
Query: 321 PSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQNALKRNWSNAGKYRWN 380
PS S TP++R S+ K K S +C N + S A
Sbjct: 139 PSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTC----NLFPASKSPASSPLTR 194
Query: 381 SRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTIGHTNQSMVKMISTRCLPWRS 440
S P ++ + P P S+L+P S + + K S +P
Sbjct: 195 STP-PVRGRAGPSGRAAASPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAI 253
Query: 441 PMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLNR 481
P P S +PLT P + T+K L R + +R
Sbjct: 254 PRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 294
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 31.2 bits (69), Expect = 2.3
Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 9/178 (5%)
Query: 295 RLQHMTIQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIP-CVDKSQEKS 353
R++ + K + F +PA + + + K+R+ ++C S P DK +
Sbjct: 4 RVRTSELWKRNGPSSSPFSSPASSRSQTPERPAKKIREEEMCHHSSSSTPLAADKESQGE 63
Query: 354 KNNSGSCKLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQE 413
K + + +QN+ + S G R + L S +QL SI + +
Sbjct: 64 KAADTTPRKKQNS--NSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLD 121
Query: 414 LSFKPTIGHTNQSM------VKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRN 465
L K ++ NQ++ T P P +P P + + AP N
Sbjct: 122 LEKKASLQWFNQALEDKSDAASNSVTETPPITQPSFTFTLPAAAPASPPTSLLAPSTN 179
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 30.4 bits (67), Expect = 4.0
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 339 LSLQIPCVDKSQEKSKNNSGSCKLEQNALKRNWSNAGKYRWNSR--PLSLKSSSTPKQLI 396
L Q V K ++KSK + E + +K ++ K ++R P KSSS P
Sbjct: 1206 LQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRK 1265
Query: 397 ETYDKNPKSSILSPCQELSFKPTIGHTNQSMVKMISTRCL----------PWRSPMPVS- 445
+K+ + ++ +P E T S K +S L P R +P +
Sbjct: 1266 PVEEKSEEGNVSAPGPESKQATTPASRKSS--KQVSQPALVIPPQPPTTGPPRKEVPKTT 1323
Query: 446 ---------PIPLTFPENQKEEIKAPKRNFGTKKK 471
P P + PE K++ AP+ + K+K
Sbjct: 1324 PSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQK 1358
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 30.0 bits (66), Expect = 5.2
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 309 QTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSCKLEQNALK 368
Q+ P +S++A V++P D+ + K+++G+ E K
Sbjct: 1302 QSILKAPGTNVAMASNQAVRIVKEPTSHDNKDI-----------CKSDAGNLNFEFQVAK 1350
Query: 369 RNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNP--KSSILSPCQELSFKPTIGHTN 424
+ S W+ SLK++ST K+ + + NP K + P E F P N
Sbjct: 1351 KEGS-----WWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPEN 1403
>gi|47519562 reticulon 4 isoform E [Homo sapiens]
Length = 986
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 169 SCSTIENNDGETLPAPNWNLKHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKP 228
+C I+ PAP+++ + VE+ D S+L E+ + + F + P
Sbjct: 492 ACDLIKETKLSAEPAPDFSDYSEMAKVEQPVPDHSELVEDSSPDSEPVDLFSDDSIPDVP 551
Query: 229 ----ETIKNVEEPFTEEPNE-VFPYPD-----FLPPPFSALDLHNLALSKSDNWKVTVDP 278
ET+ V+E TE E + Y + LPP L + LS DN K T+ P
Sbjct: 552 QKQDETVMLVKESLTETSFESMIEYENKEKLSALPPEGGKPYLESFKLS-LDNTKDTLLP 610
Query: 279 AETS 282
E S
Sbjct: 611 DEVS 614
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 169 SCSTIENNDGETLPAPNWNLKHGNSSVEENFTDESDLSENEKTNDTLLSYFKKVDLNLKP 228
+C I+ PAP+++ + VE+ D S+L E+ + + F + P
Sbjct: 698 ACDLIKETKLSAEPAPDFSDYSEMAKVEQPVPDHSELVEDSSPDSEPVDLFSDDSIPDVP 757
Query: 229 ----ETIKNVEEPFTEEPNE-VFPYPD-----FLPPPFSALDLHNLALSKSDNWKVTVDP 278
ET+ V+E TE E + Y + LPP L + LS DN K T+ P
Sbjct: 758 QKQDETVMLVKESLTETSFESMIEYENKEKLSALPPEGGKPYLESFKLS-LDNTKDTLLP 816
Query: 279 AETS 282
E S
Sbjct: 817 DEVS 820
>gi|239757222 PREDICTED: zinc finger protein 726 [Homo sapiens]
Length = 853
Score = 30.0 bits (66), Expect = 5.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 364 QNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIET 398
+N L R+WS G +R + PLSL ++ P ++ T
Sbjct: 59 ENTLARSWSEQGGFRDLAGPLSLSAAGAPGLVLTT 93
>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
Length = 526
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 9/161 (5%)
Query: 312 FCTPAVTERPSSSKATPKVRQPKLCDSLSLQIP-CVDKSQEKSKNNSGSCKLEQNALKRN 370
F +PA + + + K+R+ +LC S P D+ + K + + +QN+ +
Sbjct: 300 FSSPASSRSQTPERPAKKIREEELCHHSSSSTPLAADRESQGEKAADTTPRKKQNS--NS 357
Query: 371 WSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTIGHTNQSM--- 427
S G R + L S +QL SI + +L K ++ NQ++
Sbjct: 358 QSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLDLEKKASLQWFNQALEDK 417
Query: 428 ---VKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRN 465
T P P +P P + + AP N
Sbjct: 418 SDAASNSVTETPPITQPSFTFTLPAAAPASPPTSLLAPSTN 458
>gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo
sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 267 SKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPR---LQTTFCT 314
+K N ++ VD + V+HL T L + +H Q+ER R L TF T
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTT 111
>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
sapiens]
Length = 212
Score = 30.0 bits (66), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 267 SKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPR---LQTTFCT 314
+K N ++ VD + V+HL T L + +H Q+ER R L TF T
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTT 111
>gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo
sapiens]
Length = 213
Score = 30.0 bits (66), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 267 SKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPR---LQTTFCT 314
+K N ++ VD + V+HL T L + +H Q+ER R L TF T
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTT 111
>gi|74271888 lipin 3 [Homo sapiens]
Length = 851
Score = 30.0 bits (66), Expect = 5.2
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 196 EENFTDESDLSENEKTNDTLLSYFKKVDLNLKPETIK-NVEEPFTEEPNEVFPYPDFLPP 254
E+ +S E E ++ LS +K L+PE +EE + +P +++PY D P
Sbjct: 154 EDAVATDSSPEELEAGAESELSLPEK----LRPEPPGVQLEEKSSLQPKDIYPYSDGEWP 209
Query: 255 PFSALDLHNLALSKSDNWKVTVDP------AETSVEHLITRLLELERLQHMTIQKERPRL 308
P ++L L KSD+ P AE+ ++ RL ++ R ERP
Sbjct: 210 PQASLSAGELTSPKSDSELEVRTPEPSPLRAESHMQWAWGRLPKVAR-------AERPES 262
Query: 309 QTTFCTPA-VTERPSSSKATPKVRQPKLCDSLSLQI 343
A T P +TP D L L I
Sbjct: 263 SVVLEGRAGATSPPRGGPSTPSTSVAGGVDPLGLPI 298
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 30.0 bits (66), Expect = 5.2
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 9/161 (5%)
Query: 312 FCTPAVTERPSSSKATPKVRQPKLCDSLSLQIP-CVDKSQEKSKNNSGSCKLEQNALKRN 370
F +PA + + + K+R+ +LC S P D+ + K + + +QN+ +
Sbjct: 172 FSSPASSRSQTPERPAKKIREEELCHHSSSSTPLAADRESQGEKAADTTPRKKQNS--NS 229
Query: 371 WSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTIGHTNQSM--- 427
S G R + L S +QL SI + +L K ++ NQ++
Sbjct: 230 QSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLDLEKKASLQWFNQALEDK 289
Query: 428 ---VKMISTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRN 465
T P P +P P + + AP N
Sbjct: 290 SDAASNSVTETPPITQPSFTFTLPAAAPASPPTSLLAPSTN 330
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 6.8
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 5/144 (3%)
Query: 305 RPRLQTTFCTPAVTE----RPSSSKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGSC 360
RPR T CTPA RP+ P RQ + + + +G+
Sbjct: 14 RPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTT 73
Query: 361 KL-EQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPT 419
A K G + +P +++ T +QL+ +K + LS C+ L+ +
Sbjct: 74 PQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALS 133
Query: 420 IGHTNQSMVKMISTRCLPWRSPMP 443
+ T + R W+ P
Sbjct: 134 LSLTETQVKIWFQNRRTKWKKQNP 157
>gi|155030242 WD repeat domain 60 [Homo sapiens]
Length = 1066
Score = 29.6 bits (65), Expect = 6.8
Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 254 PPFSALDLHNLALSKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPRLQTTFC 313
PP + D++ K + + V E +VE R ++ E ++ + + P T
Sbjct: 511 PPVNEYDMYIRNFGKKNTKQAYVQCNEDNVE----RDIQTEEIETREVWTQHPGESTVVS 566
Query: 314 TPAVTERPSSSKATPKVRQPKLCDSL--SLQIPCVDKSQEK-SKNNSGSCKLEQNALKRN 370
+ S + PK+ P+LC L + Q+ V +++ + S + + + AL +
Sbjct: 567 GGSEQRDTSDAVVMPKIDTPRLCSFLRAACQVMAVLLEEDRLAAEPSWNLRAQDRALYFS 626
Query: 371 WSNAG-----KYRWNSRPLSLKSSSTPKQLIETYDKNPKSSIL 408
S++ + N + SL +S +Q++ + P+ S +
Sbjct: 627 DSSSQLNTSLPFLQNRKVSSLHTSRVQRQMVVSVHDLPEKSFV 669
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 29.3 bits (64), Expect = 8.8
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 380 NSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQEL--SFKPTIGHTNQSMVKMISTRCLP 437
NS + ++P+Q IE YD + SSI ++ +K HT + ++ S
Sbjct: 4601 NSETIPSAPLASPEQEIEHYDIDNASSIAPSDADIIQHYKQFRSHTPKFSIQRHSPLGFA 4660
Query: 438 WRSPMPVSPIPLTF 451
+SPMP+ LT+
Sbjct: 4661 RQSPMPLGASSLTY 4674
>gi|59823631 G protein-coupled receptor 125 [Homo sapiens]
Length = 1321
Score = 29.3 bits (64), Expect = 8.8
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 298 HMTIQKERPRLQTTF-CTPA-------VTERPSSSKATPKVRQPKLCDSLSLQIPCVDKS 349
H + +E RL C P V +P +S T PK C + S + C +KS
Sbjct: 1045 HHCVNREDVRLAWIMTCCPGRSSYSVQVNVQPPNSNGT-NGEAPK-CPNSSAESSCTNKS 1102
Query: 350 QEKSKNNSGSCKLEQNALKRNWSNAGKYRWNSRP 383
KN+S CKL +A NS P
Sbjct: 1103 ASSFKNSSQGCKLTNLQAAAAQCHANSLPLNSTP 1136
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 29.3 bits (64), Expect = 8.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 232 KNVEEPFTEEPNEVFPYPDFLPPPFSALDLHNLALSKSDNWKVTVDPAETS 282
KN EE E PNE+ D LPP S+ + +S SDN +T A S
Sbjct: 271 KNKEEEEEEIPNEI--REDDLPPKCSSAKAFHTEISSSDNNTLTSSNAYNS 319
>gi|31791006 keratin associated protein 13-2 [Homo sapiens]
Length = 175
Score = 29.3 bits (64), Expect = 8.8
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 362 LEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDK-NPK-----SSILSPCQELS 415
+ N N+S+ + P S + S P L+ + D +P SS+ CQE+
Sbjct: 1 MSYNCCSGNFSSRSCGDYLRYPASSRGFSYPSNLVYSTDLCSPSTCQLGSSLYRGCQEIC 60
Query: 416 FKPTIGHTNQSMVKMISTRCLPWRSPMPVSPIPLTF 451
++PT T+ T C R+ + SP T+
Sbjct: 61 WEPTSCQTSYVESSPCQTSCYRPRTSLLCSPCKTTY 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,847,287
Number of Sequences: 37866
Number of extensions: 1092571
Number of successful extensions: 2554
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2539
Number of HSP's gapped (non-prelim): 43
length of query: 508
length of database: 18,247,518
effective HSP length: 107
effective length of query: 401
effective length of database: 14,195,856
effective search space: 5692538256
effective search space used: 5692538256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.