| Name: PGBD4 | Sequence: fasta or formatted (585aa) | NCBI GI: 25777746 | |
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Description: piggyBac transposable element derived 4
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Referenced in: DNA Transposon and Retrovirus-related Sequences
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 4.4 26 2 C cysteine 2.2 13 2 D aspartate 6.7 39 2 E glutamate 4.8 28 2 F phenylalanine 5.3 31 2 G glycine 5.1 30 1 H histidine 2.7 16 2 I isoleucine 4.4 26 1 K lysine 8.2 48 2 L leucine 9.9 58 3 M methionine 3.1 18 1 N asparagine 5.0 29 2 P proline 5.1 30 2 Q glutamine 3.4 20 2 R arginine 6.7 39 1 S serine 8.0 47 2 T threonine 5.6 33 2 V valine 5.5 32 2 W tryptophan 1.0 6 1 Y tyrosine 2.7 16 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 piggyBac transposable element derived 4 PGBD3 0.077 hypothetical protein LOC267004 PGBD1 0.064 piggyBac transposable element derived 1 PGBD2 0.061 hypothetical protein LOC267002 isoform a PGBD5 0.040 piggyBac transposable element derived 5 PGBD2 0.024 hypothetical protein LOC267002 isoform b DSPP 0.009 dentin sialophosphoprotein preproprotein PPP1R12A 0.006 protein phosphatase 1, regulatory (inhibitor) subun... PPP1R12A 0.006 protein phosphatase 1, regulatory (inhibitor) subun... PPP1R12A 0.006 protein phosphatase 1, regulatory (inhibitor) subunit... NPM1 0.006 nucleophosmin 1 isoform 3 NPM1 0.006 nucleophosmin 1 isoform 1 UBTF 0.006 upstream binding transcription factor, RNA polymera... UBTF 0.006 upstream binding transcription factor, RNA polymera... UBTF 0.006 upstream binding transcription factor, RNA polymerase... MAK16 0.005 MAK16 homolog CCDC34 0.005 coiled-coil domain containing 34 isoform 1 CCDC34 0.005 coiled-coil domain containing 34 isoform 2 WBP11 0.005 WW domain binding protein 11 KIF1A 0.005 axonal transport of synaptic vesicles ZCCHC10 0.005 zinc finger, CCHC domain containing 10 DFNB59 0.004 deafness, autosomal recessive 59 SPHKAP 0.004 sphingosine kinase type 1-interacting protein isofo... SPHKAP 0.004 sphingosine kinase type 1-interacting protein isofo...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
