Guide to the Human Genome
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Name: DFNB59 Sequence: fasta or formatted (352aa) NCBI GI: 111607457
Description:

deafness, autosomal recessive 59

Referenced in:

Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         18           3
 C cysteine            2.6          9           1
 D aspartate           6.0         21           2
 E glutamate           4.8         17           2
 F phenylalanine       6.2         22           1
 G glycine             6.2         22           2
 H histidine           2.8         10           1
 I isoleucine          6.2         22           1
 K lysine              6.5         23           3
 L leucine             9.1         32           2
 M methionine          2.3          8           1
 N asparagine          3.4         12           1
 P proline             3.1         11           1
 Q glutamine           2.6          9           1
 R arginine            7.4         26           2
 S serine              8.5         30           2
 T threonine           5.1         18           2
 V valine              8.2         29           2
 W tryptophan          0.3          1           1
 Y tyrosine            3.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   deafness, autosomal recessive 59 
DFNA5                 0.164   deafness, autosomal dominant 5 protein isoform a [Hom...
DFNA5                 0.164   deafness, autosomal dominant 5 protein isoform a [H...
GSDMA                 0.056   gasdermin 1 
DFNA5                 0.038   deafness, autosomal dominant 5 protein isoform b [H...
GSDMD                 0.037   gasdermin D 
GSDMB                 0.019   gasdermin-like isoform 1 
GSDMB                 0.019   gasdermin-like isoform 2 
PGBD4                 0.007   piggyBac transposable element derived 4 
HAS2                  0.004   hyaluronan synthase 2 
RAPSN                 0.004   43 kD receptor-associated protein of the synapse iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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