Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RASSF1 Sequence: fasta or formatted (344aa) NCBI GI: 25777684
Description:

Ras association domain family 1 isoform D

Referenced in:

Ras
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [340aa] Ras association domain family 1 isoform A
alt prot [189aa] Ras association domain family 1 isoform B
alt prot [270aa] Ras association domain family 1 isoform C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           1
 C cysteine            3.5         12           2
 D aspartate           5.2         18           2
 E glutamate           7.6         26           4
 F phenylalanine       3.5         12           1
 G glycine             6.4         22           1
 H histidine           2.6          9           1
 I isoleucine          3.2         11           1
 K lysine              5.5         19           2
 L leucine            11.9         41           2
 M methionine          0.9          3           1
 N asparagine          2.9         10           1
 P proline             6.1         21           2
 Q glutamine           4.4         15           1
 R arginine           10.8         37           3
 S serine              5.2         18           2
 T threonine           3.5         12           1
 V valine              5.8         20           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association domain family 1 isoform D 
RASSF1                0.978   Ras association domain family 1 isoform A 
RASSF1                0.611   Ras association domain family 1 isoform C 
RASSF1                0.517   Ras association domain family 1 isoform B 
RASSF5                0.357   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.297   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.221   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF3                0.208   Ras association (RalGDS/AF-6) domain family member 3...
RASSF4                0.054   Ras association domain family 4 
RASSF2                0.054   Ras association domain family 2 
RASSF2                0.054   Ras association domain family 2 
RASSF6                0.050   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.050   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASGRP1               0.041   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.041   RAS guanyl releasing protein 1 isoform a 
PRKD3                 0.040   protein kinase D3 
RASGRP3               0.038   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.038   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.038   RAS guanyl releasing protein 3 (calcium and DAG-regul...
PRKCH                 0.037   protein kinase C, eta 
PRKCI                 0.037   protein kinase C, iota 
PRKCD                 0.037   protein kinase C, delta 
PRKCD                 0.037   protein kinase C, delta 
PRKCZ                 0.035   protein kinase C, zeta isoform 1 
PRKCG                 0.035   protein kinase C, gamma 
PRKD2                 0.034   protein kinase D2 isoform B 
PRKD2                 0.034   protein kinase D2 isoform A 
PRKD2                 0.034   protein kinase D2 isoform A 
PRKD2                 0.034   protein kinase D2 isoform A 
RASGRP4               0.034   RAS guanyl releasing protein 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press