Guide to the Human Genome
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Name: RASSF1 Sequence: fasta or formatted (270aa) NCBI GI: 25777682
Description:

Ras association domain family 1 isoform C

Referenced in:

Ras
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [340aa] Ras association domain family 1 isoform A
alt prot [189aa] Ras association domain family 1 isoform B
alt prot [344aa] Ras association domain family 1 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         17           1
 C cysteine            1.1          3           1
 D aspartate           5.6         15           2
 E glutamate           9.3         25           4
 F phenylalanine       4.1         11           1
 G glycine             4.1         11           1
 H histidine           2.2          6           1
 I isoleucine          3.0          8           1
 K lysine              5.9         16           2
 L leucine            11.5         31           2
 M methionine          1.5          4           1
 N asparagine          2.6          7           1
 P proline             5.6         15           2
 Q glutamine           5.6         15           1
 R arginine            9.6         26           3
 S serine              9.3         25           2
 T threonine           3.7         10           2
 V valine              5.2         14           2
 W tryptophan          1.1          3           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association domain family 1 isoform C 
RASSF1                0.808   Ras association domain family 1 isoform D 
RASSF1                0.808   Ras association domain family 1 isoform A 
RASSF1                0.684   Ras association domain family 1 isoform B 
RASSF5                0.422   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.388   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF3                0.308   Ras association (RalGDS/AF-6) domain family member 3...
RASSF5                0.207   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF4                0.072   Ras association domain family 4 
RASSF2                0.072   Ras association domain family 2 
RASSF2                0.072   Ras association domain family 2 
RASSF6                0.066   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.066   Ras association (RalGDS/AF-6) domain family 6 isofor...
MLLT4                 0.019   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
SMG7                  0.012   SMG-7 homolog isoform 1 
SMG7                  0.012   SMG-7 homolog isoform 4 
SMG7                  0.012   SMG-7 homolog isoform 2 
RIMBP3B               0.010   RIMS binding protein 3B 
RIMBP3C               0.010   RIMS binding protein 3C 
RIMBP3                0.010   DKFZP434H0735 protein 
C19orf22              0.010   hypothetical protein LOC91300 
NRXN1                 0.010   neurexin 1 isoform alpha2 precursor 
NRXN1                 0.010   neurexin 1 isoform beta precursor 
NRXN1                 0.010   neurexin 1 isoform alpha1 precursor 
NUCB2                 0.008   nucleobindin 2 
CELSR1                0.008   cadherin EGF LAG seven-pass G-type receptor 1 
ARHGAP12              0.008   Rho GTPase activating protein 12 
NUMBL                 0.008   numb homolog (Drosophila)-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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