Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RASSF1 Sequence: fasta or formatted (189aa) NCBI GI: 25777680
Description:

Ras association domain family 1 isoform B

Referenced in:

Ras
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [340aa] Ras association domain family 1 isoform A
alt prot [270aa] Ras association domain family 1 isoform C
alt prot [344aa] Ras association domain family 1 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         11           1
 C cysteine            1.1          2           1
 D aspartate           5.3         10           2
 E glutamate           6.9         13           4
 F phenylalanine       4.2          8           1
 G glycine             4.8          9           1
 H histidine           3.2          6           1
 I isoleucine          2.6          5           1
 K lysine              7.4         14           2
 L leucine            14.3         27           2
 M methionine          1.1          2           1
 N asparagine          2.1          4           1
 P proline             5.8         11           2
 Q glutamine           4.8          9           1
 R arginine           11.1         21           3
 S serine              7.4         14           2
 T threonine           2.1          4           1
 V valine              6.9         13           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association domain family 1 isoform B 
RASSF1                1.000   Ras association domain family 1 isoform D 
RASSF1                1.000   Ras association domain family 1 isoform C 
RASSF1                1.000   Ras association domain family 1 isoform A 
RASSF5                0.527   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.527   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF3                0.354   Ras association (RalGDS/AF-6) domain family member 3...
RASSF5                0.261   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF4                0.105   Ras association domain family 4 
RASSF2                0.105   Ras association domain family 2 
RASSF2                0.105   Ras association domain family 2 
RASSF6                0.096   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.096   Ras association (RalGDS/AF-6) domain family 6 isofor...
MLLT4                 0.028   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.023   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.023   myeloid/lymphoid or mixed-lineage leukemia (trithora...
SMG7                  0.017   SMG-7 homolog isoform 1 
SMG7                  0.017   SMG-7 homolog isoform 4 
SMG7                  0.017   SMG-7 homolog isoform 2 
RIMBP3B               0.014   RIMS binding protein 3B 
RIMBP3C               0.014   RIMS binding protein 3C 
RIMBP3                0.014   DKFZP434H0735 protein 
C19orf22              0.014   hypothetical protein LOC91300 
CELSR1                0.011   cadherin EGF LAG seven-pass G-type receptor 1 
NUMBL                 0.011   numb homolog (Drosophila)-like 
PION                  0.008   pigeon homolog 
MYO10                 0.008   myosin X 
SNX18                 0.006   sorting nexin 18 isoform a 
OSBP2                 0.006   oxysterol binding protein 2 isoform a 
KIAA0090              0.006   hypothetical protein LOC23065 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press