Guide to the Human Genome
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Name: RASSF5 Sequence: fasta or formatted (265aa) NCBI GI: 32996735
Description:

Ras association (RalGDS/AF-6) domain family 5 isoform C

Referenced in:

Ras

Other entries for this name:
alt prot [418aa] Ras association (RalGDS/AF-6) domain family 5 isoform A
alt prot [336aa] Ras association (RalGDS/AF-6) domain family 5 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         12           2
 C cysteine            1.5          4           1
 D aspartate           5.7         15           1
 E glutamate           8.3         22           2
 F phenylalanine       5.3         14           2
 G glycine             4.2         11           1
 H histidine           1.5          4           1
 I isoleucine          5.3         14           1
 K lysine             10.2         27           2
 L leucine            10.6         28           2
 M methionine          1.5          4           1
 N asparagine          3.0          8           1
 P proline             4.5         12           2
 Q glutamine           6.4         17           2
 R arginine            4.5         12           2
 S serine              6.8         18           2
 T threonine           7.2         19           3
 V valine              6.0         16           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association (RalGDS/AF-6) domain family 5 isofor... 
RASSF5                0.843   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.502   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF1                0.434   Ras association domain family 1 isoform C 
RASSF1                0.404   Ras association domain family 1 isoform D 
RASSF1                0.404   Ras association domain family 1 isoform A 
RASSF3                0.375   Ras association (RalGDS/AF-6) domain family member 3...
RASSF1                0.371   Ras association domain family 1 isoform B 
RASSF2                0.096   Ras association domain family 2 
RASSF2                0.096   Ras association domain family 2 
RASSF4                0.072   Ras association domain family 4 
RASSF6                0.062   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.062   Ras association (RalGDS/AF-6) domain family 6 isofor...
MLLT4                 0.040   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.040   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.040   myeloid/lymphoid or mixed-lineage leukemia (trithora...
CENPF                 0.022   centromere protein F 
TRAK1                 0.018   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
NCAPD2                0.016   non-SMC condensin I complex, subunit D2 
NOC3L                 0.016   nucleolar complex associated 3 homolog 
MNS1                  0.012   meiosis-specific nuclear structural 1 
FHAD1                 0.012   forkhead-associated (FHA) phosphopeptide binding do...
SPHKAP                0.010   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.010   sphingosine kinase type 1-interacting protein isofo...
LOC389217             0.010   PREDICTED: similar to SET translocation 
LOC389217             0.010   PREDICTED: similar to SET translocation 
LOC389217             0.010   PREDICTED: similar to SET translocation 
PHAX                  0.010   RNA U, small nuclear RNA export adaptor (phosphoryla...
LONP1                 0.010   mitochondrial lon peptidase 1 
LOC646817             0.010   PREDICTED: similar to SET translocation 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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