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Search of human proteins with 253795490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo
sapiens]
(374 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens] 764 0.0
gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens] 764 0.0
gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens] 764 0.0
gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens] 661 0.0
gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens] 661 0.0
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens] 427 e-120
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens] 424 e-119
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 42 0.001
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 42 0.001
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 38 0.017
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 34 0.19
gi|62953127 polyhomeotic 1-like [Homo sapiens] 34 0.24
gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 33 0.32
gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 33 0.32
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 32 0.71
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 32 0.71
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 32 0.71
gi|221139761 zinc finger protein 853 [Homo sapiens] 32 0.93
gi|37574601 zinc finger protein 232 [Homo sapiens] 32 0.93
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 31 1.6
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 30 2.7
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 30 2.7
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 30 2.7
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 30 2.7
gi|22538413 forkhead box P2 isoform III [Homo sapiens] 30 2.7
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 30 2.7
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 30 2.7
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 30 2.7
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 30 2.7
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 30 2.7
>gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens]
Length = 374
Score = 764 bits (1974), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 60
MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP
Sbjct: 1 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 60
Query: 61 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 120
PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT
Sbjct: 61 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 120
Query: 121 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 180
GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN
Sbjct: 121 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 180
Query: 181 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 240
LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT
Sbjct: 181 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 240
Query: 241 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 300
DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI
Sbjct: 241 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 300
Query: 301 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 360
ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE
Sbjct: 301 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 360
Query: 361 RRQRPKHESDCILL 374
RRQRPKHESDCILL
Sbjct: 361 RRQRPKHESDCILL 374
>gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens]
Length = 517
Score = 764 bits (1974), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 60
MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP
Sbjct: 144 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 203
Query: 61 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 120
PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT
Sbjct: 204 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 263
Query: 121 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 180
GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN
Sbjct: 264 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 323
Query: 181 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 240
LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT
Sbjct: 324 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 383
Query: 241 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 300
DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI
Sbjct: 384 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 443
Query: 301 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 360
ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE
Sbjct: 444 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 503
Query: 361 RRQRPKHESDCILL 374
RRQRPKHESDCILL
Sbjct: 504 RRQRPKHESDCILL 517
>gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens]
Length = 469
Score = 764 bits (1974), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 60
MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP
Sbjct: 96 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 155
Query: 61 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 120
PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT
Sbjct: 156 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 215
Query: 121 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 180
GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN
Sbjct: 216 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 275
Query: 181 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 240
LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT
Sbjct: 276 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 335
Query: 241 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 300
DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI
Sbjct: 336 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 395
Query: 301 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 360
ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE
Sbjct: 396 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 455
Query: 361 RRQRPKHESDCILL 374
RRQRPKHESDCILL
Sbjct: 456 RRQRPKHESDCILL 469
>gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
Length = 327
Score = 661 bits (1705), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 48 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 107
MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
Sbjct: 1 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60
Query: 108 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 167
KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
Sbjct: 61 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120
Query: 168 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 227
ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180
Query: 228 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 287
MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240
Query: 288 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 347
PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 300
Query: 348 QGRGATSGRPAGERRQRPKHESDCILL 374
QGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 301 QGRGATSGRPAGERRQRPKHESDCILL 327
>gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
Length = 327
Score = 661 bits (1705), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 48 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 107
MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
Sbjct: 1 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60
Query: 108 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 167
KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
Sbjct: 61 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120
Query: 168 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 227
ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180
Query: 228 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 287
MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240
Query: 288 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 347
PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 300
Query: 348 QGRGATSGRPAGERRQRPKHESDCILL 374
QGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 301 QGRGATSGRPAGERRQRPKHESDCILL 327
>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
Length = 621
Score = 427 bits (1099), Expect = e-120
Identities = 222/381 (58%), Positives = 275/381 (72%), Gaps = 26/381 (6%)
Query: 10 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 69
+ R P Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP E+IT++
Sbjct: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293
Query: 70 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 129
+LM +LG+ +L KP+E SE +LN++QN+ DAM +L KL TGLDVNVRFTGV FEYTP
Sbjct: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353
Query: 130 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 189
EC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413
Query: 190 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 249
QFL TA QLTYHGLCELT+ +EGEL VFFRNNHFSTMTK+K LYLLVTDQGFL EE+
Sbjct: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473
Query: 250 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 308
VVWESLHNVDGD FCDS+FHL P ++ + +Q Q+DQDYL+ALSLQQ+Q
Sbjct: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527
Query: 309 ------PRGPLGLTDLELAQQLQQEE-------YQQQQAAQPVRMRTRVLSLQGRGA--- 352
+ P G++DLELA++LQ+EE YQ+Q+ A + QG+ A
Sbjct: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQQGQPAQAS 587
Query: 353 -TSGRPAG--ERRQRPKHESD 370
+SGR +G ER+++ E D
Sbjct: 588 PSSGRQSGNSERKRKEPREKD 608
>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
Length = 620
Score = 424 bits (1091), Expect = e-119
Identities = 221/380 (58%), Positives = 272/380 (71%), Gaps = 25/380 (6%)
Query: 10 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 69
+ R P Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP E+IT++
Sbjct: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293
Query: 70 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 129
+LM +LG+ +L KP+E SE +LN++QN+ DAM +L KL TGLDVNVRFTGV FEYTP
Sbjct: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353
Query: 130 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 189
EC VFDLL IPLYHGWLVDPQ + V+AVG SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413
Query: 190 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 249
QFL TA QLTYHGLCELT+ +EGEL VFFRNNHFSTMTK+K LYLLVTDQGFL EE+
Sbjct: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473
Query: 250 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 308
VVWESLHNVDGD FCDS+FHL P ++ + +Q Q+DQDYL+ALSLQQ+Q
Sbjct: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527
Query: 309 ------PRGPLGLTDLELAQQLQQEE------YQQQQAAQPVRMRTRVLSLQGRGA---- 352
+ P G++DLELA++LQ+EE Y Q+Q QG+ A
Sbjct: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASP 587
Query: 353 TSGRPAG--ERRQRPKHESD 370
+SGR +G ER+++ E D
Sbjct: 588 SSGRQSGNSERKRKEPREKD 607
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 41.6 bits (96), Expect = 0.001
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 239 VTDQGFLQE-EQVVWESLHNVDGDSCFCDS-----DFHLSHSLGKGPGAEGGSGSPEKQL 292
V D+ F+Q ++++ E+L G+S HL L KGP GG G E
Sbjct: 1108 VEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESA- 1166
Query: 293 QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 347
D + + L ++ + + ++ ++ QL + QQQA Q RMR + L+L
Sbjct: 1167 ----DTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTL 1217
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 41.6 bits (96), Expect = 0.001
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 239 VTDQGFLQE-EQVVWESLHNVDGDSCFCDS-----DFHLSHSLGKGPGAEGGSGSPEKQL 292
V D+ F+Q ++++ E+L G+S HL L KGP GG G E
Sbjct: 1108 VEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESA- 1166
Query: 293 QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 347
D + + L ++ + + ++ ++ QL + QQQA Q RMR + L+L
Sbjct: 1167 ----DTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTL 1217
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 37.7 bits (86), Expect = 0.017
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 279 PGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQ-QAAQP 337
PGA G G P +Q+ + Q +++ QQ +G +G + QQ QQ+++QQQ A
Sbjct: 3815 PGALGPQG-PHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVTAQQQQQQQQHQQQGSMAGL 3873
Query: 338 VRMRTRVLSLQGRGATSGRPAGERRQ 363
++ ++S G+ S +P G +Q
Sbjct: 3874 SHLQQSLMSHSGQPKLSAQPMGSLQQ 3899
Score = 34.7 bits (78), Expect = 0.14
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 270 HLSHSLGKGPGAEGGSGSPE---KQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQ 326
HL SL G S P +QLQ Q LQQQQ + L+ QQLQQ
Sbjct: 3875 HLQQSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQQQ------QLQQQQQLQQ 3928
Query: 327 EEYQQQQAAQPVRMR 341
++ QQQQ Q ++ +
Sbjct: 3929 QQLQQQQQQQQLQQQ 3943
Score = 30.0 bits (66), Expect = 3.5
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 273 HSLGKGP--GAEGG---SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQE 327
HS G G G GG + L D L LQ QQ R ++LAQ+LQQ+
Sbjct: 3685 HSGGAGSLAGPSGGFFPGNLALRSLGPDSRLLQERQLQLQQQR-------MQLAQKLQQQ 3737
Query: 328 EYQQQQAAQPV-RMRTRVLSLQGRGATSGRPAGERRQ 363
+ QQQQ + ++ + QG G + + G + Q
Sbjct: 3738 QQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQ 3774
Score = 28.9 bits (63), Expect = 7.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQ 336
++QLQ Q L LQQQQ + L + QQ QQ+ QQQQ Q
Sbjct: 3917 QQQLQ-QQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQQ 3963
Score = 28.9 bits (63), Expect = 7.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQ 336
++Q Q+ Q L QQQQ L+ QQ QQ+++QQQQ Q
Sbjct: 3935 QQQQQLQQQQQQQLQQQQQQ---------LQQQQQQQQQQFQQQQQQQ 3973
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 34.3 bits (77), Expect = 0.19
Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 27/146 (18%)
Query: 222 NNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFH----------- 270
+NH+S +T S ++ G Q E+ V GD S+ H
Sbjct: 6 SNHYSLLTSSASIVHA-EPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA 64
Query: 271 LSHSLGKGPGAEGGSG---------------SPEKQLQVDQDYLIALSLQQQQPRGPLGL 315
LSH G G G GG G SP Q + ++ + + GP L
Sbjct: 65 LSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGAL 124
Query: 316 TDLELAQQLQQEEYQQQQAAQPVRMR 341
QQ QQ++ QQQQ Q + R
Sbjct: 125 QQQHQQQQQQQQQQQQQQQQQQQQQR 150
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 33.9 bits (76), Expect = 0.24
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPL--GLTDLELAQQLQQEEYQQQQAAQP 337
+KQ+ + Q I Q Q + L T L+LAQQ QQ++ QQQQ QP
Sbjct: 390 QKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQQP 440
>gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.32
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 259 DGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALS 303
+ +SC C F L+HSLG+G G+ G+ K + D D+++ S
Sbjct: 59 EAESCDCLQGFQLTHSLGEGTGSGMGTLLHSKIREEDPDHIMNTS 103
>gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.32
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 259 DGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALS 303
+ +SC C F L+HSLG+G G+ G+ K + D D+++ S
Sbjct: 59 EAESCDCLQGFQLTHSLGEGTGSGMGTLLHSKIREEDPDHIMNTS 103
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 32.3 bits (72), Expect = 0.71
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 271 LSHSLGKG-PGAEGG---SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDL-----ELA 321
++HSLG G P + G S S + Q +I +L QQ PL L + +L
Sbjct: 3000 VNHSLGTGKPATQTGPQTSQSGTSSMSGPQQLMIPQTLAQQNRERPLLLEEQPLLLQDLL 3059
Query: 322 QQLQQEEYQQQQAAQPVRMRT 342
Q +QE+ QQ+Q +R R+
Sbjct: 3060 DQERQEQQQQRQMQAMIRQRS 3080
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 32.3 bits (72), Expect = 0.71
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 290 KQLQVDQDYLIALSLQ-----QQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVR 339
+Q Q Q +LI L Q QQQ + + L+L QQ QQ++ QQQQ Q ++
Sbjct: 211 QQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQ 265
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 285 SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMR 341
+ +P+ QLQ+ Q ++LQQQQ + QQ QQ++ QQQ AQ M+
Sbjct: 146 TATPQTQLQLQQ-----VALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQ 197
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 32.3 bits (72), Expect = 0.71
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 290 KQLQVDQDYLIALSLQ-----QQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVR 339
+Q Q Q +LI L Q QQQ + + L+L QQ QQ++ QQQQ Q ++
Sbjct: 211 QQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQ 265
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 285 SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMR 341
+ +P+ QLQ+ Q ++LQQQQ + QQ QQ++ QQQ AQ M+
Sbjct: 146 TATPQTQLQLQQ-----VALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQ 197
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 32.0 bits (71), Expect = 0.93
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 278 GPGAE---GGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTD-----------LELAQQ 323
GPG + GGSG E Q + + + S Q+ P+G ++ L+L Q
Sbjct: 36 GPGPDTLSGGSGGSESQEEEEPQERNS-SPQRPAVSAPVGASEIAEETRPGQRELQLQQL 94
Query: 324 LQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHES 369
QQ E QQQ + ++ L LQ + G+ + Q+ KH+S
Sbjct: 95 EQQPEPQQQPQHEQLQQPQPHLELQQQPQQDGQQQLSQLQQEKHQS 140
Score = 29.6 bits (65), Expect = 4.6
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQ---LQQEEYQQQQAAQPVRMRTRVL 345
++Q Q+ Q LQQQQ + L +L QQ LQQ+++QQQQ + ++ + ++L
Sbjct: 189 QQQEQLQQQVQEQQLLQQQQEQ----LQQQQLLQQQEQLQQQQFQQQQ--EQLQQQQQLL 242
Query: 346 SLQGRG 351
LQ +G
Sbjct: 243 LLQQQG 248
>gi|37574601 zinc finger protein 232 [Homo sapiens]
Length = 444
Score = 32.0 bits (71), Expect = 0.93
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 36 QSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLG-NCLLSIKPQEKSEGLQLN 94
Q T GP L+ + +L +W L P+K T ++++ L L+I P+E ++ +
Sbjct: 88 QETPGPREALSQLRVLCCEW---LRPEKH--TKEQILEFLVLEQFLTILPEELQSWVRGH 142
Query: 95 FQQNVDDAMTVLPKLATGLDVNVRFTG 121
++ ++A+TVL L GL+ + G
Sbjct: 143 HPKSGEEAVTVLEDLEKGLEPEPQVPG 169
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 31.2 bits (69), Expect = 1.6
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 225 FSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGG 284
+ T+ KS+ LL+T + +W LH + + DF H G G E G
Sbjct: 627 YKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH----GKGREYG 682
Query: 285 SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRV 344
S K+L+ + +++ P +E +++ Q+Q + +
Sbjct: 683 YASLHKELEPFLLRRVKKDVEKSLP------AKVEQILRMEMSALQKQYYKWILTRNYKA 736
Query: 345 LSLQGRGATSG 355
LS +G+TSG
Sbjct: 737 LSKGSKGSTSG 747
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 273 HSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLG--LTDLELAQQLQQEEYQ 330
HS G+GPGA S + Q GP G L L + QLQQ++ Q
Sbjct: 36 HSQGQGPGANFVS-----------------FVGQAGGGGPAGQQLPQLPQSSQLQQQQQQ 78
Query: 331 QQQAAQP 337
QQQ QP
Sbjct: 79 QQQQQQP 85
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 273 HSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLG--LTDLELAQQLQQEEYQ 330
HS G+GPGA S + Q GP G L L + QLQQ++ Q
Sbjct: 36 HSQGQGPGANFVS-----------------FVGQAGGGGPAGQQLPQLPQSSQLQQQQQQ 78
Query: 331 QQQAAQP 337
QQQ QP
Sbjct: 79 QQQQQQP 85
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 273 HSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLG--LTDLELAQQLQQEEYQ 330
HS G+GPGA S + Q GP G L L + QLQQ++ Q
Sbjct: 36 HSQGQGPGANFVS-----------------FVGQAGGGGPAGQQLPQLPQSSQLQQQQQQ 78
Query: 331 QQQAAQP 337
QQQ QP
Sbjct: 79 QQQQQQP 85
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 293 QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGA 352
Q +Q +L L QQQQ + QQ QQ++ QQQQ Q + + + Q +
Sbjct: 142 QQEQLHLQLLQQQQQQQQ----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 191
Query: 353 TSGRPAGERRQRPKHE 368
G+ A E++Q+ + +
Sbjct: 192 HPGKQAKEQQQQQQQQ 207
Score = 29.3 bits (64), Expect = 6.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQ 348
++Q Q Q QQQQ + P + +Q QQ++ QQQ AAQ + + ++L +Q
Sbjct: 170 QQQQQQQQQQQQQQQQQQQQQQHP----GKQAKEQQQQQQQQQQLAAQQLVFQQQLLQMQ 225
>gi|22538413 forkhead box P2 isoform III [Homo sapiens]
Length = 623
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 293 QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGA 352
Q +Q +L L QQQQ + QQ QQ++ QQQQ Q + + + Q +
Sbjct: 50 QQEQLHLQLLQQQQQQQQ----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 99
Query: 353 TSGRPAGERRQRPKHE 368
G+ A E++Q+ + +
Sbjct: 100 HPGKQAKEQQQQQQQQ 115
Score = 29.3 bits (64), Expect = 6.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQ 348
++Q Q Q QQQQ + P + +Q QQ++ QQQ AAQ + + ++L +Q
Sbjct: 78 QQQQQQQQQQQQQQQQQQQQQQHP----GKQAKEQQQQQQQQQQLAAQQLVFQQQLLQMQ 133
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 293 QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGA 352
Q +Q +L L QQQQ + QQ QQ++ QQQQ Q + + + Q +
Sbjct: 167 QQEQLHLQLLQQQQQQQQ----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
Query: 353 TSGRPAGERRQRPKHE 368
G+ A E++Q+ + +
Sbjct: 217 HPGKQAKEQQQQQQQQ 232
Score = 29.3 bits (64), Expect = 6.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQ 348
++Q Q Q QQQQ + P + +Q QQ++ QQQ AAQ + + ++L +Q
Sbjct: 195 QQQQQQQQQQQQQQQQQQQQQQHP----GKQAKEQQQQQQQQQQLAAQQLVFQQQLLQMQ 250
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sapiens]
Length = 1293
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRG----------PLGLT------DLELAQQLQQEEYQQQ 332
E+Q + ++ + AL QQQQ + P G T E A+Q+Q+++ QQQ
Sbjct: 956 EEQRRQQRELMKALQQQQQQQQQKLSGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQ 1015
Query: 333 QAAQPVRMRTRVLS 346
Q QP R R S
Sbjct: 1016 QHQQPNRARNNTHS 1029
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sapiens]
Length = 1320
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRG----------PLGLT------DLELAQQLQQEEYQQQ 332
E+Q + ++ + AL QQQQ + P G T E A+Q+Q+++ QQQ
Sbjct: 983 EEQRRQQRELMKALQQQQQQQQQKLSGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQ 1042
Query: 333 QAAQPVRMRTRVLS 346
Q QP R R S
Sbjct: 1043 QHQQPNRARNNTHS 1056
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRG----------PLGLT------DLELAQQLQQEEYQQQ 332
E+Q + ++ + AL QQQQ + P G T E A+Q+Q+++ QQQ
Sbjct: 962 EEQRRQQRELMKALQQQQQQQQQKLSGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQ 1021
Query: 333 QAAQPVRMRTRVLS 346
Q QP R R S
Sbjct: 1022 QHQQPNRARNNTHS 1035
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 289 EKQLQVDQDYLIALSLQQQQPRG----------PLGLT------DLELAQQLQQEEYQQQ 332
E+Q + ++ + AL QQQQ + P G T E A+Q+Q+++ QQQ
Sbjct: 962 EEQRRQQRELMKALQQQQQQQQQKLSGWGNVSKPSGTTKSLLEIQQEEARQMQKQQQQQQ 1021
Query: 333 QAAQPVRMRTRVLS 346
Q QP R R S
Sbjct: 1022 QHQQPNRARNNTHS 1035
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,117,876
Number of Sequences: 37866
Number of extensions: 777106
Number of successful extensions: 3557
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3037
Number of HSP's gapped (non-prelim): 285
length of query: 374
length of database: 18,247,518
effective HSP length: 104
effective length of query: 270
effective length of database: 14,309,454
effective search space: 3863552580
effective search space used: 3863552580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.