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Search of human proteins with 25121987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25121987 non-SMC condensin I complex, subunit H [Homo
sapiens]
(741 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens] 1510 0.0
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 34 0.43
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 33 0.73
gi|55956786 spindle assembly associated Sfi1 homolog isoform a [... 33 0.96
gi|55956784 spindle assembly associated Sfi1 homolog isoform b [... 33 0.96
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 32 1.6
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 32 1.6
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 32 1.6
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 32 1.6
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 32 1.6
gi|93102379 low density lipoprotein-related protein 1B precursor... 32 1.6
gi|23510413 sorting nexin 26 [Homo sapiens] 32 1.6
gi|117190342 PHD finger protein 2 [Homo sapiens] 32 2.1
gi|167736355 mucin 4 isoform a [Homo sapiens] 32 2.8
gi|55750053 atrophin-1 [Homo sapiens] 32 2.8
gi|55750041 atrophin-1 [Homo sapiens] 32 2.8
gi|210032580 SET domain containing 1B [Homo sapiens] 32 2.8
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 31 3.6
gi|19924103 synapsin II isoform IIa [Homo sapiens] 31 4.7
gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens] 31 4.7
gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens] 31 4.7
gi|6005997 double C2-like domains, beta [Homo sapiens] 31 4.7
gi|169174355 PREDICTED: similar to sphingomyelin phosphodiestera... 30 6.2
gi|169172738 PREDICTED: similar to sphingomyelin phosphodiestera... 30 6.2
gi|38570146 synaptotagmin VII [Homo sapiens] 30 6.2
gi|55741849 WD repeat domain 22 [Homo sapiens] 30 8.1
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 30 8.1
gi|192449445 cartilage intermediate layer protein [Homo sapiens] 30 8.1
>gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens]
Length = 741
Score = 1510 bits (3909), Expect = 0.0
Identities = 741/741 (100%), Positives = 741/741 (100%)
Query: 1 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD 60
MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
Sbjct: 1 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD 60
Query: 61 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE 120
EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
Sbjct: 61 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE 120
Query: 121 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL 180
NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
Sbjct: 121 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL 180
Query: 181 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE 240
GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
Sbjct: 181 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE 240
Query: 241 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT 300
IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
Sbjct: 241 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT 300
Query: 301 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD 360
DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
Sbjct: 301 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD 360
Query: 361 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL 420
CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
Sbjct: 361 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL 420
Query: 421 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF 480
LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
Sbjct: 421 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF 480
Query: 481 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE 540
DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
Sbjct: 481 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE 540
Query: 541 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ 600
TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
Sbjct: 541 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ 600
Query: 601 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG 660
QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
Sbjct: 601 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG 660
Query: 661 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN 720
KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
Sbjct: 661 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN 720
Query: 721 EKNLKLEGTEDLSDVLVRQGD 741
EKNLKLEGTEDLSDVLVRQGD
Sbjct: 721 EKNLKLEGTEDLSDVLVRQGD 741
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 34.3 bits (77), Expect = 0.43
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 1 MGPPGPALPATMNNSSSETRGHPHSASSPSE---RVFPMPLPRKAPLNIPGT---PVLED 54
MGP G ALP+ RG P S +SPS+ + P PL +AP + P T P L +
Sbjct: 1005 MGPSG-ALPSPDAPCLPVKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPPWLSE 1063
Query: 55 FPQNDDEKE 63
P+N +E
Sbjct: 1064 LPENTSLQE 1072
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 33.5 bits (75), Expect = 0.73
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 5 GPALPATMNNSSSETRGH-PHSASSPSERVFPMPLPRKAPLNIP-GTPVL 52
G +L ++MN ++S G P SASS S R P+ KAP N+P G P L
Sbjct: 755 GASLSSSMNTANSLCLGGTPASASSSSSRAAPLVTSGKAPPNLPQGVPPL 804
>gi|55956786 spindle assembly associated Sfi1 homolog isoform a [Homo
sapiens]
Length = 1242
Score = 33.1 bits (74), Expect = 0.96
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 610 GLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSGKEADAEANH 669
G ++T G +L AE +++ + +HY T KQ++WS S E N
Sbjct: 1138 GPGLSTAGSLDLEAELEEIQQQLLHYQTT---------KQNLWSCRRQASSLRRWLELNR 1188
Query: 670 REAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSI 708
E G E E +K L + +Q + AQ I
Sbjct: 1189 EEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQPI 1227
>gi|55956784 spindle assembly associated Sfi1 homolog isoform b [Homo
sapiens]
Length = 1211
Score = 33.1 bits (74), Expect = 0.96
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 610 GLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSGKEADAEANH 669
G ++T G +L AE +++ + +HY T KQ++WS S E N
Sbjct: 1107 GPGLSTAGSLDLEAELEEIQQQLLHYQTT---------KQNLWSCRRQASSLRRWLELNR 1157
Query: 670 REAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSI 708
E G E E +K L + +Q + AQ I
Sbjct: 1158 EEPGPEDQEVEQQVQKELEQVEMQIQLLAEELQAQRQPI 1196
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 32.3 bits (72), Expect = 1.6
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 56 PQNDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCI 115
P+ ERL R+ + + + S S + P+S SID+ A + + S +
Sbjct: 426 PEASGRGERLGRKVAPLATTEDSLASIPFIDEPTSPSIDLQAKHVPASAVVSSAMNSAPV 485
Query: 116 KLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHAD 175
++ + T G H S I K +++ +A T + + + D
Sbjct: 486 LGTSPSSPTFTFTLGRHYSQDCSSI---KAGRRSSYLLAITTERSKSCDDGLNT---FRD 539
Query: 176 VYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKH 218
RVL L PSL + DGS GT++ A P K+H
Sbjct: 540 EGRVLRRLPNRIPSLRMLRSFFTDGSLDSWGTSEDADAPSKRH 582
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 4 PGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAP 43
P P+LP + + S T G P + SSP + PLP+K P
Sbjct: 1060 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDP 1099
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 4 PGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAP 43
P P+LP + + S T G P + SSP + PLP+K P
Sbjct: 1099 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDP 1138
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 4 PGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAP 43
P P+LP + + S T G P + SSP + PLP+K P
Sbjct: 1099 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDP 1138
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 4 PGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAP 43
P P+LP + + S T G P + SSP + PLP+K P
Sbjct: 1055 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDP 1094
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 32.3 bits (72), Expect = 1.6
Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 25/191 (13%)
Query: 287 EPLELPELGCVEMTDLKAPLQQCAEDRQICPSL--AGFQFTQWDSETHNESVSALVDKFK 344
EP + PE C + + CA IC G + + +TH L +FK
Sbjct: 3348 EPDDCPEFRC-QPGRFQCGTGLCALPAFICDGENDCGDNSDELNCDTH----VCLSGQFK 3402
Query: 345 --KNDQVFDINAEVD-ESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQS 401
KN + +N + + DCGD + D D P+++ D+ + ++ K
Sbjct: 3403 CTKNQKCIPVNLRCNGQDDCGD--------EEDERDCPENSCSPDYFQCKTTKHCISKLW 3454
Query: 402 CQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSEN 461
+E D C + P E+ + + PDHWR + S EN
Sbjct: 3455 VCDEDPDCADASDEANCDKKTCGPHEFQCKNNNCI-----PDHWRCDSQNDCSDNSDEEN 3509
Query: 462 KKKS--TKKDF 470
K T KDF
Sbjct: 3510 CKPQTCTLKDF 3520
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 1.6
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 5 GPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTP 50
GP P+ ++SSS HP S S P V +P ++AP P TP
Sbjct: 1014 GPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRAPWG-PRTP 1058
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 32.0 bits (71), Expect = 2.1
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 527 GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS 586
G RLLK A + V+ + YEE +D+ D+ P L+ +D D+ G+
Sbjct: 842 GKRLLKRAAKNSVDLDDYEEEQDHLDACFKDSDYVYPSLE-SDEDNPIFKSRSKKRKGSD 900
Query: 587 DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK 646
D P + D P +G + + E+ L A K+++ E +K KK +K
Sbjct: 901 DAPYSPTARVGPSVPRQDRPVREGTRVASI-ETGLAAAAAKLSQQEEQKSK-KKKSAKRK 958
Query: 647 LKQSMWSLLTALS 659
L + S T+ S
Sbjct: 959 LTPNTTSPSTSTS 971
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 31.6 bits (70), Expect = 2.8
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 5 GPALPATMNNSSSETRGH----PHSASSPSERVFPMPLPRKAPLNIP---GTPVLEDFPQ 57
G A P + ++SS + GH P +++S PLP +P + TPV
Sbjct: 3852 GHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTS 3911
Query: 58 NDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKL 117
+ + + L +P + SPSS S ++T+P + + ++T + L
Sbjct: 3912 SASTGDTTPLPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSASTGHATPLPL 3971
Query: 118 STENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDAS 161
++ + ++T + L + D S Q P + T D +
Sbjct: 3972 TSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTT 4015
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 2.8
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 2 GPPGPALPATMNNSSSETRG-HPHSASSPSERVFPMPLPRKAPLNIPGTPVL 52
GP GP + ++ N+SSS ++G +P S SPS+ P+ AP P P +
Sbjct: 562 GPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQG------PQGAPYPFPPVPTV 607
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 2.8
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 2 GPPGPALPATMNNSSSETRG-HPHSASSPSERVFPMPLPRKAPLNIPGTPVL 52
GP GP + ++ N+SSS ++G +P S SPS+ P+ AP P P +
Sbjct: 562 GPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQG------PQGAPYPFPPVPTV 607
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 31.6 bits (70), Expect = 2.8
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 3 PPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDDE- 61
PPGP P T +S E G P SP P + PGTP LE P ++
Sbjct: 451 PPGPPPPDT---NSMELGGRPTFGWSPE------------PCDSPGTPTLESSPAGPEKP 495
Query: 62 --------KERLQRRRSRVFDLQ--FSTDSPRLLASP-SSRSIDISATIPKFTNTQ 106
+ L+ +R+++ L+ S ++ SP SS S +S P TN+Q
Sbjct: 496 HDSLDSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLSPLAPFGTNSQ 551
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 601 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG 660
Q G+ ++Q T E++ + KI++ +T ++ M+K ++ S+LT L G
Sbjct: 524 QEGNEVDSQSSIRTEAKEASGETTGVDITKIQVKRCETMREKHMQKQQEREKSVLTPLRG 583
Query: 661 KEADAEANHREAGKEAALAEVADEKMLS---GLTKDLQRSLPPVMAQNLSI 708
A +VA++ +L+ G+T+ L + LP +Q + +
Sbjct: 584 DVASCN------------TQVAEKPVLTAVPGITRHLTKRLPTKSSQKVEV 622
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 30.8 bits (68), Expect = 4.7
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 3 PPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDDEK 62
PPGP+LP + ++SSS + P P+ P + P L PQ
Sbjct: 478 PPGPSLPPSSSSSSSSSSSAPQRPGGPTTH---GDAPSSSSSLAEAQPPLAAPPQKPQPH 534
Query: 63 ERLQRRRSRVFDLQFSTDS 81
+L + +S FS S
Sbjct: 535 PQLNKSQSLTNAFSFSESS 553
>gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 30.8 bits (68), Expect = 4.7
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 51 VLEDFPQNDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEH 110
+L+DF QN DE++ LQ D+Q + DS S S ++ +PK E
Sbjct: 15 LLDDFEQNPDEQDYLQ-------DVQNAYDSNHCSVSSELASSQRTSLLPK-----DQEC 62
Query: 111 YSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNF--KVAAGTLDASTKIYAVR 168
++C T T +++ + ++ I +K+ + V GT D +Y R
Sbjct: 63 VNSCASSETSYG-TNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMGR 121
Query: 169 VDAVHADVYRVLGGLGKDAPSLEEVEGHVAD 199
D+ +G L S E+++ + D
Sbjct: 122 CSKPICDLISDMGNLVHATNSEEDIKKLLPD 152
>gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 30.8 bits (68), Expect = 4.7
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 51 VLEDFPQNDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEH 110
+L+DF QN DE++ LQ D+Q + DS S S ++ +PK E
Sbjct: 15 LLDDFEQNPDEQDYLQ-------DVQNAYDSNHCSVSSELASSQRTSLLPK-----DQEC 62
Query: 111 YSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNF--KVAAGTLDASTKIYAVR 168
++C T T +++ + ++ I +K+ + V GT D +Y R
Sbjct: 63 VNSCASSETSYG-TNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMGR 121
Query: 169 VDAVHADVYRVLGGLGKDAPSLEEVEGHVAD 199
D+ +G L S E+++ + D
Sbjct: 122 CSKPICDLISDMGNLVHATNSEEDIKKLLPD 152
>gi|6005997 double C2-like domains, beta [Homo sapiens]
Length = 412
Score = 30.8 bits (68), Expect = 4.7
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 568 ADSDDEDLDDLFVGPVGNS---DLSPYPCHPPKTAQQNGDTPEAQGL---DITTYGE--- 618
A DDED+D LF G G+S P P PP A+ D P+A G D T G
Sbjct: 76 AREDDEDVDQLF-GAYGSSPGPSPGPSPARPP--AKPPEDEPDADGYESDDCTALGTLDF 132
Query: 619 SNLVAEPQKVNKIEIHYAKTAKKMD 643
S L + I AK K MD
Sbjct: 133 SLLYDQENNALHCTITKAKGLKPMD 157
>gi|169174355 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 6.2
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 355 EVDESDCGDFPDGS--LGD-DFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLG 410
E D G+ S LGD +FD N DH +HE FR +++PC++ + Q++ +LG
Sbjct: 299 EADREQSGEVVAFSVLLGDLNFD-NCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALG 356
>gi|169172738 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 6.2
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 355 EVDESDCGDFPDGS--LGD-DFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLG 410
E D G+ S LGD +FD N DH +HE FR +++PC++ + Q++ +LG
Sbjct: 299 EADREQSGEVVAFSVLLGDLNFD-NCWKDHRLEQEHELFRCFQDPCRLGTRQKQPWALG 356
>gi|38570146 synaptotagmin VII [Homo sapiens]
Length = 403
Score = 30.4 bits (67), Expect = 6.2
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 15 SSSETRGHPHSASSPSER-VFPMPLPRKAPLNIPGTPVLEDFPQNDDEKERLQRRRSRVF 73
+S ET G P S SE+ +P KA + PV P DE +R RS V
Sbjct: 51 NSLETVGTPDSGRGRSEKKAIKLPAGGKA---VNTAPVPGQTPH--DESDRRTEPRSSVS 105
Query: 74 DLQFSTDSPRLLASPSS 90
DL S S L+ SP S
Sbjct: 106 DLVNSLTSEMLMLSPGS 122
>gi|55741849 WD repeat domain 22 [Homo sapiens]
Length = 942
Score = 30.0 bits (66), Expect = 8.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 556 NDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQQNGD 604
N S CP Q+ DS++ L+ + N L P P HP Q G+
Sbjct: 806 NSGSGNCPRTQSDDSEERSLETICANH-NNGRLHPRPPHPHNNGQNLGE 853
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.0 bits (66), Expect = 8.1
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 2 GPPGPALPATMNNSSSETR-GHPHSASSPSERVFPMPLPRKAPLNIPGTP 50
GPPGP P + S + G P ER P P K P IPG P
Sbjct: 213 GPPGP--PGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFP 260
>gi|192449445 cartilage intermediate layer protein [Homo sapiens]
Length = 1184
Score = 30.0 bits (66), Expect = 8.1
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 607 EAQGLDITTYG------ESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLL--TAL 658
E + TYG + +EP K+++H T KM +WSL T L
Sbjct: 648 EGDTFPLRTYGMFSVDFRDEVTSEPLNAGKVKVHLDSTQVKMPEHISTVKLWSLNPDTGL 707
Query: 659 SGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHL 718
+E D + ++ K D L G + +R L NL +P + C + +
Sbjct: 708 WEEEGDFKFENQRRNKR------EDRTFLVGNLEIRERRL-----FNLDVPESRRCFVKV 756
Query: 719 ANEKNLKLEGTEDLSDVLV 737
++ + +E + V++
Sbjct: 757 RAYRSERFLPSEQIQGVVI 775
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,468,573
Number of Sequences: 37866
Number of extensions: 1482059
Number of successful extensions: 3991
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3972
Number of HSP's gapped (non-prelim): 43
length of query: 741
length of database: 18,247,518
effective HSP length: 110
effective length of query: 631
effective length of database: 14,082,258
effective search space: 8885904798
effective search space used: 8885904798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.