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Search of human proteins with 247301334
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|247301334 non-protein coding RNA 153 isoform 3 [Homo
sapiens]
(540 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|247301334 non-protein coding RNA 153 isoform 3 [Homo sapiens] 1077 0.0
gi|247301318 non-protein coding RNA 153 isoform 2 [Homo sapiens] 1074 0.0
gi|118150654 non-protein coding RNA 153 isoform 1 [Homo sapiens] 1074 0.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 49 2e-05
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 45 1e-04
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 44 3e-04
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 43 6e-04
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 43 6e-04
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa... 43 8e-04
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 41 0.002
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 41 0.002
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 40 0.005
gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens] 39 0.009
gi|34996489 pleckstrin homology domain interacting protein [Homo... 39 0.016
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 39 0.016
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 38 0.027
gi|190194423 SPARC-like 1 [Homo sapiens] 37 0.035
gi|190341024 SPARC-like 1 [Homo sapiens] 37 0.035
gi|210032580 SET domain containing 1B [Homo sapiens] 37 0.046
gi|17978469 cyclin T2 isoform b [Homo sapiens] 36 0.078
gi|154090979 hypothetical protein LOC57481 [Homo sapiens] 36 0.078
gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens] 36 0.10
gi|4502805 chromogranin A precursor [Homo sapiens] 36 0.10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 36 0.10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 36 0.10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 36 0.10
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.13
gi|40217799 hypothetical protein LOC79864 isoform 1 [Homo sapiens] 35 0.13
gi|38176300 nestin [Homo sapiens] 35 0.17
gi|239753231 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 35 0.23
>gi|247301334 non-protein coding RNA 153 isoform 3 [Homo sapiens]
Length = 540
Score = 1077 bits (2786), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MQVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHS 60
MQVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHS
Sbjct: 1 MQVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHS 60
Query: 61 HRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLE 120
HRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLE
Sbjct: 61 HRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLE 120
Query: 121 IGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEE 180
IGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEE
Sbjct: 121 IGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEE 180
Query: 181 KRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWS 240
KRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWS
Sbjct: 181 KRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWS 240
Query: 241 TSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQT 300
TSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQT
Sbjct: 241 TSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQT 300
Query: 301 LSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTE 360
LSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTE
Sbjct: 301 LSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTE 360
Query: 361 ECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVA 420
ECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVA
Sbjct: 361 ECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVA 420
Query: 421 ADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIAS 480
ADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIAS
Sbjct: 421 ADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIAS 480
Query: 481 EASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 540
EASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD
Sbjct: 481 EASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 540
>gi|247301318 non-protein coding RNA 153 isoform 2 [Homo sapiens]
Length = 570
Score = 1074 bits (2777), Expect = 0.0
Identities = 538/539 (99%), Positives = 539/539 (100%)
Query: 2 QVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH 61
+VAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH
Sbjct: 32 KVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH 91
Query: 62 RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI 121
RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI
Sbjct: 92 RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI 151
Query: 122 GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK 181
GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK
Sbjct: 152 GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK 211
Query: 182 RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST 241
RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST
Sbjct: 212 RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST 271
Query: 242 SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL 301
SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL
Sbjct: 272 SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL 331
Query: 302 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 361
SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE
Sbjct: 332 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 391
Query: 362 CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA 421
CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA
Sbjct: 392 CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA 451
Query: 422 DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE 481
DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE
Sbjct: 452 DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE 511
Query: 482 ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 540
ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD
Sbjct: 512 ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 570
>gi|118150654 non-protein coding RNA 153 isoform 1 [Homo sapiens]
Length = 673
Score = 1074 bits (2777), Expect = 0.0
Identities = 538/539 (99%), Positives = 539/539 (100%)
Query: 2 QVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH 61
+VAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH
Sbjct: 135 KVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSH 194
Query: 62 RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI 121
RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI
Sbjct: 195 RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEI 254
Query: 122 GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK 181
GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK
Sbjct: 255 GSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEK 314
Query: 182 RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST 241
RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST
Sbjct: 315 RASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWST 374
Query: 242 SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL 301
SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL
Sbjct: 375 SSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTL 434
Query: 302 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 361
SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE
Sbjct: 435 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 494
Query: 362 CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA 421
CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA
Sbjct: 495 CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA 554
Query: 422 DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE 481
DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE
Sbjct: 555 DIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASE 614
Query: 482 ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 540
ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD
Sbjct: 615 ASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDDFYD 673
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 48.5 bits (114), Expect = 2e-05
Identities = 91/505 (18%), Positives = 178/505 (35%), Gaps = 39/505 (7%)
Query: 39 DFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQ 98
D S + S + S S ++ SSN +DS S+D+ + SD+ D K+
Sbjct: 570 DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSS--DSSDSSDSKSDSS 627
Query: 99 IGEKMPVTASVLSEEEQTHCLEIGSNT-RHGKSNLSEGKKSAELNSPLRERLSPENRTTD 157
E + S+ ++ + N+ SN S S++ + S ++ +
Sbjct: 628 KSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSS 687
Query: 158 LKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHL 217
DSS S E S S S+ +S N S + S S
Sbjct: 688 DSSDSSDSSNS----------SESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDS 737
Query: 218 AHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEA 277
++ S + +S +S+ S S D + D ++
Sbjct: 738 SNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDS 797
Query: 278 LKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVA 337
+ + + + + +S DS S ++ + + SD + G
Sbjct: 798 SNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSD---SSDGSDSD 854
Query: 338 TLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLN 397
+ D+S +++ + + + S S+ESS S S + NS ++ +
Sbjct: 855 SSNRSDSSNSSDSSDSSDSSNSSDSSDSS--DSNESSNSSDSSDSSNSSDSDSS-----D 907
Query: 398 SVPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASV 457
S + + SS D S+ N + + D++N +++ ++
Sbjct: 908 SSNSSDSSDSSNSSDSSESSNSS--------------DNSNSSDSSNSSDSSDSSDSSNS 953
Query: 458 SHLSGLNIGSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESD-- 515
S S + S + ++ +N S S +SS+ S S + + S+ D SD
Sbjct: 954 SDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSS 1013
Query: 516 DSNSEIEAALRPRNHNTDDSDDFYD 540
DS++ +++ + N+ DS D D
Sbjct: 1014 DSSNSSDSSNSSDSSNSSDSSDSSD 1038
Score = 45.8 bits (107), Expect = 1e-04
Identities = 89/505 (17%), Positives = 176/505 (34%), Gaps = 18/505 (3%)
Query: 39 DFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQ 98
D S S + + D ++ SSN +DS S+D+ N SD+ + S
Sbjct: 775 DSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSD 834
Query: 99 IGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDL 158
+ S S + + S+ R SN S+ S++ ++ S ++ +
Sbjct: 835 SSNSSDSSDSSDSSDGS----DSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSN 890
Query: 159 KCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLA 218
DSS S + + + +S S+ ES N S SD
Sbjct: 891 SSDSSDSSN----SSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSD--- 943
Query: 219 HREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEAL 278
S S SSD + S S D + + + D ++
Sbjct: 944 --SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1001
Query: 279 KLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVAT 338
+ + + + S + +SS ++ + + + DS ++
Sbjct: 1002 NSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSS 1061
Query: 339 LKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSI-LNDNSGIKEAKPAVWLN 397
+ + + + +E + +SS+SS S S +D+S ++ + +
Sbjct: 1062 DSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS--SD 1119
Query: 398 SVPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASV 457
S + + SS D S N + +E+ ++ +++ + + +D+S
Sbjct: 1120 SSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSN 1179
Query: 458 SHLSGLNIGSGAFETKTANKIASEASFS--SSEGSPLSRHENKKKPVINLKSNALWDESD 515
S S + S + + +S++S S SS+ S S + + SN D SD
Sbjct: 1180 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSD 1239
Query: 516 DSNSEIEAALRPRNHNTDDSDDFYD 540
S+S + + ++D SD D
Sbjct: 1240 SSDSSDSSNSSDSSDSSDSSDSTSD 1264
Score = 44.3 bits (103), Expect = 3e-04
Identities = 83/500 (16%), Positives = 182/500 (36%), Gaps = 26/500 (5%)
Query: 41 STEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQ----CLNKSDNIDGKAS 96
S++ S + N D + ++ SS+ +DS +S+D+ + SD+ + S
Sbjct: 642 SSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSES 701
Query: 97 LQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTT 156
+ +S S+ ++ + S+ S+ S S++ + S ++ +
Sbjct: 702 SDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS 761
Query: 157 DLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDH 216
DSS S+ + + +S S+ +S N S SD
Sbjct: 762 SNSSDSSDSSDSSDSS------DSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDS 815
Query: 217 LAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIE 276
S + + S SSD + S D + N + D
Sbjct: 816 SDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSN 875
Query: 277 ALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHV 336
+ + + ++ + + +S DS+ S+N+ + SD +
Sbjct: 876 SSDSSDSSDSNESSNSSDSS--DSSNSSDSDSSDSSNS-------SDSSDSSNSSDSSES 926
Query: 337 ATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWL 396
+ ++ NS + + + ++ + +SS+SS S S +++S ++
Sbjct: 927 SNSSDNSNS-SDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSS----- 980
Query: 397 NSVPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDAS 456
NS + + SS D S N + +++ ++ +++ + + +D+S
Sbjct: 981 NSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSS 1040
Query: 457 VSHLSGLNIGSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDD 516
S S + S + + +S++S SS+ S S + + + S+ D SD
Sbjct: 1041 DSSDSSDSSDSSDSSNSSDSSDSSDSS-DSSDSSDSSDSSDSSESSDSSDSSNSSDSSDS 1099
Query: 517 SNSEIEAALRPRNHNTDDSD 536
S+S + + ++D SD
Sbjct: 1100 SDSSDSSDSSDSSDSSDSSD 1119
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/496 (17%), Positives = 174/496 (35%), Gaps = 22/496 (4%)
Query: 41 STEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIG 100
S++ + + S S ++ S + +DS + +D+ N SD+ D S
Sbjct: 601 SSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSS 660
Query: 101 EKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKC 160
+ S S + S+ S+ S+ S+E + S + ++D
Sbjct: 661 NSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSN 720
Query: 161 DSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHR 220
+SS S+ + +S S+ +S + + S SD +
Sbjct: 721 SNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSD--SSD 778
Query: 221 EPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKL 280
S + S SSD + S D S N D ++
Sbjct: 779 SSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDS--- 835
Query: 281 IHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLK 340
++ + + + + DS S ++ + + SD + + +
Sbjct: 836 SNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSS 895
Query: 341 EHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVP 400
+ NS +++ + + + S SSESS S +DNS ++ NS
Sbjct: 896 DSSNSSDSDSSDSSNSSDSSDSSNSS--DSSESSNS-----SDNSNSSDSS-----NSSD 943
Query: 401 TREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHL 460
+ + SS D S + + +++ + + D+++ +++ +D+S S
Sbjct: 944 SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDS----SDSSDSSD 999
Query: 461 SGLNIGSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSE 520
S N + + +++ S S +SS+ S S + + S+ D SD SNS
Sbjct: 1000 SS-NSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1058
Query: 521 IEAALRPRNHNTDDSD 536
+ + ++D SD
Sbjct: 1059 DSSDSSDSSDSSDSSD 1074
Score = 38.9 bits (89), Expect = 0.012
Identities = 88/504 (17%), Positives = 179/504 (35%), Gaps = 17/504 (3%)
Query: 41 STEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIG 100
S++ + + N S S + SSN +DS S+D+ N SD+ D S
Sbjct: 794 SSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSS--NSSDSSDSSDSSDGS 851
Query: 101 EKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLK- 159
+ S S + SN+ S+ S+ +S+ + S ++ ++D
Sbjct: 852 DSDSSNRSDSSNSSDSSDSSDSSNSSDS-SDSSDSNESSNSSDSSDSSNSSDSDSSDSSN 910
Query: 160 -CDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLA 218
DSS S + + +S + S+ +S N S SD
Sbjct: 911 SSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSD 970
Query: 219 HREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEAL 278
S + S SSD + S + D S + + + +
Sbjct: 971 SNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSD----SSDSSDSSDSSNSSDSSNSSD 1026
Query: 279 KLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVAT 338
++ + S++ + + S DS S ++ + + SD + +
Sbjct: 1027 SSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSD 1086
Query: 339 LKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNS 398
+ NS ++ + S+ S S+ S S +D+S ++ + +S
Sbjct: 1087 SSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSS--DS 1144
Query: 399 VPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVS 458
+ E SS D S + + +++ ++ +++ + + +D+S S
Sbjct: 1145 SDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS 1204
Query: 459 HLSGLNIGSGAFETKTANKIASEASFS-----SSEGSPLSRHENKKKPVINL-KSNALWD 512
S + S + + +S++S S SS+ S S N + S++ D
Sbjct: 1205 SDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSD 1264
Query: 513 ESDDSNSEIEAALRPRNHNTDDSD 536
+D+S+S+ ++ N + DSD
Sbjct: 1265 SNDESDSQSKSGNGNNNGSDSDSD 1288
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/370 (21%), Positives = 143/370 (38%), Gaps = 38/370 (10%)
Query: 167 EGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQK 226
EG++ RE E+EE + + + E E E K HS E
Sbjct: 309 EGKVAQREE-ELEE--TGNQHNDVEIEEAGEEEEKEIAIVHSDAE--------------- 350
Query: 227 PFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPN-PGGKMEGEDGIEALKLIHAEQ 285
K QEEEE+ ++ + + E+ + ES + Q + P M+ + +E +K + A+Q
Sbjct: 351 ---KEQEEEEQK----QEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQ 403
Query: 286 ERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVG-QHVATLK-EHD 343
E + + ++ P + S P E PD + G ++V+ L E +
Sbjct: 404 EVMETNRVESV------EPSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKE 457
Query: 344 NSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTRE 403
+ KEE + + + +S S S P + + E L P
Sbjct: 458 SEEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVT 517
Query: 404 QEVSSGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGL 463
QE G +K+ + +TE +L ++ ++T+ R + + + S
Sbjct: 518 QE--QGHLLPERKDFPVESVKLTEVPVEPVL--TVHPESKSKTKTRSRSRGRARNKTSKS 573
Query: 464 NIGSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEA 523
S + + +++ +S + SSS GS SR + + S+ S S+SE +
Sbjct: 574 RSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRS 633
Query: 524 ALRPRNHNTD 533
R R HN D
Sbjct: 634 RSRGRGHNRD 643
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 44.3 bits (103), Expect = 3e-04
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 44/289 (15%)
Query: 92 DGKASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERL-- 149
+ K+ ++ K P A +EE E+ S + E K E SP +E
Sbjct: 515 EAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKS 574
Query: 150 -----SPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQ 204
SPE + K ++ S +E + + V+E+ SP + PV E E K
Sbjct: 575 PAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKE----EAKSPA 630
Query: 205 EKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPN 264
E SP + S + +++ P + E+EE+ +SPE +
Sbjct: 631 EVKSPEKAKSP----TKEEAKSPEKAKSPEKEEA------------------KSPEKAKS 668
Query: 265 PGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPD 324
P K E + +A + AE + + K+ + + SP+ K +P +E ++P+
Sbjct: 669 P-VKAEAKSPEKAKSPVKAEAK--SPEKAKSPVKEEAKSPEKAK-----SPVKEEAKSPE 720
Query: 325 SDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSES 373
++ V + T ++ + VKEEA + KA + E + + S E+
Sbjct: 721 K--AKSPVKEEAKTPEKAKSPVKEEAKS-PEKAKSPEKAKTLDVKSPEA 766
Score = 43.9 bits (102), Expect = 4e-04
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 29/274 (10%)
Query: 101 EKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRT-TDLK 159
E+ VT V EEE+ E G G+ +EG + + P E SPE + +K
Sbjct: 462 EETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVK 521
Query: 160 CDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYC----ESENKWSQEKHSPWEGVSD 215
++ S +E + +E + + SP + P E E+++ +E SP E S
Sbjct: 522 EEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSP 581
Query: 216 HLAH----------REPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNP 265
A E KS + + +EE +S + + ++ ++SPE +P
Sbjct: 582 EKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSP 641
Query: 266 GGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKE---------SSTNAPT 316
K E + +A ++E + K+ + SP+ K +P
Sbjct: 642 -TKEEAKSPEKAKS--PEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPV 698
Query: 317 REPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEA 350
+E ++P+ ++ V + + ++ + VKEEA
Sbjct: 699 KEEAKSPEK--AKSPVKEEAKSPEKAKSPVKEEA 730
Score = 42.0 bits (97), Expect = 0.001
Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 27/286 (9%)
Query: 102 KMPVTASVLSEEE-QTHCLEIGSNTRHGKSNLSEGKKSAE-LNSPLRERL-------SPE 152
K PV S E+ ++ E + KS + E K+ E SP++E SPE
Sbjct: 695 KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPE 754
Query: 153 N-RTTDLKC--------DSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWS 203
+T D+K + + + + V+E+ SP + P+ E ++ K
Sbjct: 755 KAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEI 814
Query: 204 QEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEP-- 261
+K V + +E K ++P +K +EE+ + + + S E+ E+P+P
Sbjct: 815 PKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKV 874
Query: 262 --QPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREP 319
+ P + E +EA K AE ++ + EK + D++ + T +EP
Sbjct: 875 EEKKEPAVEKPKESKVEA-KKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEP 933
Query: 320 ----GQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 361
+ P + + KE EE KA ++
Sbjct: 934 DDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDD 979
Score = 33.1 bits (74), Expect = 0.66
Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 6/199 (3%)
Query: 213 VSDHLAHREPKSQKPFRKMQEE----EEESWSTSSDLTISISEDDLILESPEPQPNPGGK 268
VS H+ + + K K ++E EE++ T ++ E+ E + G +
Sbjct: 432 VSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEE 491
Query: 269 MEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVP 328
E E G E K AE+ K+ + + SP +E +S + P + +
Sbjct: 492 EEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSP-AEAKSPEKEEAKSPAEVKSPEKA 550
Query: 329 RAQVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIK 388
++ + + E + KEEA + + + E + A ++S S S +K
Sbjct: 551 KSPAKEEAKSPPEAKSPEKEEAKS-PAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVK 609
Query: 389 EAKPAVWLNSVPTREQEVS 407
E + P +E+ S
Sbjct: 610 EEAKSPAEAKSPVKEEAKS 628
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 43.1 bits (100), Expect = 6e-04
Identities = 58/278 (20%), Positives = 113/278 (40%), Gaps = 23/278 (8%)
Query: 197 ESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLIL 256
E+E + K SP + + + E + ++ + +EEEE+ + S SE +
Sbjct: 500 EAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS 559
Query: 257 ESPEPQPNPG---GKMEGEDGIEALKLIHAEQERVALSTEKNCILQT-LSSPDSEKESST 312
E E + G + EGE+ EA + E++ ++T++ + + P+ K
Sbjct: 560 EKEEGEQEEGETEAEAEGEEA-EAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVP 618
Query: 313 NAPTREPGQTPDSDVPRAQVGQH---VATLKEHDNS------VKEEATALLRKALTEECG 363
+P E G++P P + G+ + ++E S V+E+ + + K+ EE
Sbjct: 619 KSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKA 678
Query: 364 R----RSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKS----- 414
+ +S + ++S + KE K A V +E++ K
Sbjct: 679 KSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPV 738
Query: 415 KKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQK 452
K+E VA + IT++ L K+ + Q E +K
Sbjct: 739 KEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEK 776
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 43.1 bits (100), Expect = 6e-04
Identities = 58/278 (20%), Positives = 113/278 (40%), Gaps = 23/278 (8%)
Query: 197 ESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLIL 256
E+E + K SP + + + E + ++ + +EEEE+ + S SE +
Sbjct: 124 EAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS 183
Query: 257 ESPEPQPNPG---GKMEGEDGIEALKLIHAEQERVALSTEKNCILQT-LSSPDSEKESST 312
E E + G + EGE+ EA + E++ ++T++ + + P+ K
Sbjct: 184 EKEEGEQEEGETEAEAEGEEA-EAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVP 242
Query: 313 NAPTREPGQTPDSDVPRAQVGQH---VATLKEHDNS------VKEEATALLRKALTEECG 363
+P E G++P P + G+ + ++E S V+E+ + + K+ EE
Sbjct: 243 KSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKA 302
Query: 364 R----RSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKS----- 414
+ +S + ++S + KE K A V +E++ K
Sbjct: 303 KSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPV 362
Query: 415 KKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQK 452
K+E VA + IT++ L K+ + Q E +K
Sbjct: 363 KEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEK 400
>gi|54633319 PDZ domain-containing guanine nucleotide exchange factor
I [Homo sapiens]
Length = 1601
Score = 42.7 bits (99), Expect = 8e-04
Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 49/342 (14%)
Query: 41 STEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQ-- 98
S+ H SP + S ++ +A+S N++DS + S+ + ++ A+LQ
Sbjct: 1232 SSLHSSPPASPQGSPHKGYTLIPSAKSDNLSDSSHSEISSRSSIVSNCSVDSMSAALQDE 1291
Query: 99 --IGEKMPVTASVLSEEEQTHCLEIGSNTRHGKS----NLSEGKKSAELNSPLRERLSPE 152
+ + V S + E+ H IG +++HG S K A +S E +S E
Sbjct: 1292 RCSSQALAVPESTGALEKTEHASGIGDHSQHGPGWTLLKPSLIKCLAVSSSVSNEEISQE 1351
Query: 153 NRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEG 212
+ + DS GS + H + P P S W
Sbjct: 1352 HIIIEA-ADSGRGSWTSCSSSSHDNFQSL-------PNPKS--------WDFLNSYRHTH 1395
Query: 213 VSDHLAHREPKSQKPFRKMQE-----------EEEESWSTSSDLTISISEDDLILESPEP 261
+ D +A EP +P+ + E +SW++SS L+ + + ++
Sbjct: 1396 LDDPIAEVEPTDSEPYSCSKSCSRTCGQCKGSLERKSWTSSSSLSDTYEPNYGTVKRRVL 1455
Query: 262 QPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQ 321
+ P EG D +A ++ + V STEK I+ ++SP + REP
Sbjct: 1456 ESTPAESSEGLDPKDATDPVY---KTVTSSTEKGLIVYCVTSPKKDDR------YREPPP 1506
Query: 322 TPDS----DVPRAQVGQHVATLKEHDNSVKEEATALLRKALT 359
TP + + G H LK D SV + + ++ +L+
Sbjct: 1507 TPPGYLGISLADLKEGPH-THLKPPDYSVAVQRSKMMHNSLS 1547
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 41.2 bits (95), Expect = 0.002
Identities = 56/225 (24%), Positives = 84/225 (37%), Gaps = 34/225 (15%)
Query: 211 EGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKME 270
E S PKS+K +K QE + + + D+ + SE D S + + G E
Sbjct: 155 ERASARSKRSSPKSRKGKKKSQENKNKG-NKIQDIQLKTSEPDFT--SANMRDSAEGPKE 211
Query: 271 GEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRA 330
E+ A L E+ LQ ++S + E +T AP EP PD + A
Sbjct: 212 DEEKPSASAL------------EQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAA 259
Query: 331 -----QVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNS 385
+G+ +E D +E+ E+ G A +E+S P I D
Sbjct: 260 ACEVNDLGEEEEEEEEEDEEEEEDDD----DDELEDEGEEEASMPNENSVKEPEIRCDE- 314
Query: 386 GIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAADIPITETEA 430
KP L T +E C + + A IP T+ EA
Sbjct: 315 -----KPEDLLEEPKTTSEETLEDCSEVTP----AMQIPRTKEEA 350
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 41.2 bits (95), Expect = 0.002
Identities = 56/225 (24%), Positives = 84/225 (37%), Gaps = 34/225 (15%)
Query: 211 EGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKME 270
E S PKS+K +K QE + + + D+ + SE D S + + G E
Sbjct: 155 ERASARSKRSSPKSRKGKKKSQENKNKG-NKIQDIQLKTSEPDFT--SANMRDSAEGPKE 211
Query: 271 GEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRA 330
E+ A L E+ LQ ++S + E +T AP EP PD + A
Sbjct: 212 DEEKPSASAL------------EQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAA 259
Query: 331 -----QVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNS 385
+G+ +E D +E+ E+ G A +E+S P I D
Sbjct: 260 ACEVNDLGEEEEEEEEEDEEEEEDDD----DDELEDEGEEEASMPNENSVKEPEIRCDE- 314
Query: 386 GIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAADIPITETEA 430
KP L T +E C + + A IP T+ EA
Sbjct: 315 -----KPEDLLEEPKTTSEETLEDCSEVTP----AMQIPRTKEEA 350
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 40.0 bits (92), Expect = 0.005
Identities = 51/196 (26%), Positives = 75/196 (38%), Gaps = 21/196 (10%)
Query: 149 LSPENRTT---DLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSE----YCESE-- 199
+ PEN T DL +S + + L + + S S PVSE +C SE
Sbjct: 509 VQPENTTAAHNDLPENSIVNYDSQALNM----LADLALSSATSSTPVSEARNLHCSSELP 564
Query: 200 -NKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILES 258
N K + G SDH HR K+QK + ++ SDLT+S E+ L+ S
Sbjct: 565 QNDVLLSKENSLRGTSDHEYHRGVKTQKGELLPNPSSDRKSNSGSDLTVSQDEESLVPCS 624
Query: 259 PEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAP--T 316
P E E L+ A Q +L T S +E +P
Sbjct: 625 QAPAKAQSALTE-----EMLESSDASQSSSVSVEHSYALLLTEHSKKHLQEREILSPLFP 679
Query: 317 REPGQTPDSDVPRAQV 332
R ++P++ P +V
Sbjct: 680 RNGTKSPEAATPVGKV 695
>gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens]
Length = 880
Score = 39.3 bits (90), Expect = 0.009
Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 38/270 (14%)
Query: 302 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRK----- 356
SS S + ST++PT P TP P ++ Q V H + + ++++ K
Sbjct: 414 SSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDSPSSVVNKQLGSM 473
Query: 357 ALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLN------SVPTREQEVSSGC 410
+L E+ + S + P + S + LN S+ + + + S C
Sbjct: 474 SLDEQQDNNNEKLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHC 533
Query: 411 GDKSKKENVAADIPITETEAYQLLK--KATLQDNT---------NQTENRFQKT------ 453
+ ++E+ + E K + + +D T N EN T
Sbjct: 534 KSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVSAENPVENHINITQSDKFT 593
Query: 454 ----DASVSHLSGLNI--GSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKS 507
D++ + LN+ G E +++ A E S + + +EN P ++
Sbjct: 594 AKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESATNENNTNPEPQFQT 653
Query: 508 NALWDESDDSNSEIEAALRPRNHNTDDSDD 537
A + + S ++AL+ +TDDSDD
Sbjct: 654 EATGPSAHEETSTRDSALQ----DTDDSDD 679
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 38.5 bits (88), Expect = 0.016
Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 48/291 (16%)
Query: 43 EHKSPQPTKNFSIPDPHSH---------RQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDG 93
E+K P +KN + H H +QT Q + T S + +T ++ + +G
Sbjct: 765 ENKIPTVSKNHA----HEHFLDLGESKKQQTNQHNYRTRSALEETPRPSEEIE-----NG 815
Query: 94 KASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPEN 153
+S GE + V+ SEEE+ GS++ + S+ S+ A +N +++ P+N
Sbjct: 816 SSSSDEGEVVAVSGGT-SEEEERAWHSDGSSSDYS-SDYSDWTADAGINLQPPKKV-PKN 872
Query: 154 RTTDLKCDSSSGSEGEILTREHIEVEEKRASP----PVSP------------IPVSEYCE 197
+T + S E E ++ I+ E+K+ + P+SP + V E
Sbjct: 873 KTKKAESSSDEEEESEKQKQKQIKKEKKKVNEEKDGPISPKKKKPKERKQKRLAVGEL-- 930
Query: 198 SENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILE 257
+EN + E+ P ++D + R PF +E + + + ++ + I
Sbjct: 931 TENGLTLEEWLPSTWITDTIPRR-----CPFVPQMGDEVYYFRQGHEAYVEMARKNKIY- 984
Query: 258 SPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEK 308
S P+ P KME + E +K++ + E V L T C+ PD+ K
Sbjct: 985 SINPKKQPWHKMELREQ-ELMKIVGIKYE-VGLPT-LCCLKLAFLDPDTGK 1032
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 38.5 bits (88), Expect = 0.016
Identities = 103/519 (19%), Positives = 192/519 (36%), Gaps = 59/519 (11%)
Query: 37 MRDFSTEHKSPQPTKNF-SIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGK- 94
M D + ++ P++ F +I S + + S D V N +K+D DGK
Sbjct: 1143 MSDETNNEETESPSQEFVNITKYESSLYSQEYSKPAD---VTPLNGFSEGSKTDATDGKD 1199
Query: 95 -----ASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERL 149
+++ M S +C E+ ++T + S +++ L
Sbjct: 1200 YNASASTISPPSSMEEDKFSRSALRDAYCSEVKASTTLDIKDSISAVSSEKVSPSKSPSL 1259
Query: 150 SPENRTTDLKCDSSSGSEGEILTREHIEV----EEKRASPPVSPIPVSEYCESENKWSQE 205
SP + K S LT I+V E SP V+ V E+C S + E
Sbjct: 1260 SPSPPSPLEKTPLGERSVNFSLTPNEIKVSAEAEVAPVSPEVTQEVVEEHCASPEDKTLE 1319
Query: 206 KHSPWEGVSDHLAH----REPKSQKPFRKMQE--EEEESWSTSSDLTISISEDDLILESP 259
SP + V+ H + P +K E E+ + S + + + E++ SP
Sbjct: 1320 VVSPSQSVTGSAGHTPYYQSPTDEKSSHLPTEVIEKPPAVPVSFEFSDAKDENERASVSP 1379
Query: 260 EPQPNPGGKMEGEDGIEALK---LIHAEQERVA-LSTEKNCILQTLSSPDSEKESSTNAP 315
+P P + E + L+ LI +E + LS + + SP EK +P
Sbjct: 1380 MDEPVPDSESPIEKVLSPLRSPPLIGSESAYESFLSADDKASGRGAESPFEEKSGKQGSP 1439
Query: 316 TREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSC 375
+ +P S++ + Q K+E + + E+ G+ E+
Sbjct: 1440 DQ---VSPVSEMTSTSLYQD-----------KQEGKSTDFAPIKEDFGQEKKTDDVEAMS 1485
Query: 376 SLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLK 435
S P++ D + + P D S+ + D ++ +E K
Sbjct: 1486 SQPALALDERKLGDVSPTQI----------------DVSQFGSFKEDTKMSISEGTVSDK 1529
Query: 436 KATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASEASFSSSEGSPLSRH 495
AT D E+ + + V+ +S ++ + +F T + ++ S + GSP S
Sbjct: 1530 SATPVDE-GVAEDTYSHME-GVASVSTASVATSSFPEPTTDDVS--PSLHAEVGSPHSTE 1585
Query: 496 ENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDD 534
+ V +++ + E++ S S+ E RP + + D
Sbjct: 1586 VDDSLSVSVVQTPTTFQETEMSPSK-EECPRPMSISPPD 1623
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 37.7 bits (86), Expect = 0.027
Identities = 87/416 (20%), Positives = 152/416 (36%), Gaps = 63/416 (15%)
Query: 93 GKASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPE 152
G++ L+ EK + V EEE + +R K +L+ KK +P + PE
Sbjct: 38 GRSHLEPEEKQALKRLV--EEELLKMQVDEAASREDKLDLT--KKGKRPPTPCSD---PE 90
Query: 153 NRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEG 212
+ +S SGSE PP +E ++ + + E
Sbjct: 91 RKRFRFNSESESGSEAS---------SPDYFGPPAKNGVAAEVSPAKEENPRRASKAVEE 141
Query: 213 VSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTI---------SISEDDLILESPEPQP 263
SD R+ +Q+ +EEE+ + + S+S ES E +
Sbjct: 142 SSDEERQRDLPAQRGEESSEEEEKGYKGKTRKKPVVKKQAPGKASVSRKQAREESEESEA 201
Query: 264 NP----GGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREP 319
P K+EG G ++LK E E L+ +K ++E +E
Sbjct: 202 EPVQRTAKKVEGNKGTKSLKESEQESEEEILAQKK-----------EQREEEVEEEEKEE 250
Query: 320 GQTPDSDVPRAQV-GQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSL- 377
+ PR + G+ + +E K +A LL + +EE + +A +S
Sbjct: 251 DEEKGDWKPRTRSNGRRKSAREERSCKQKSQAKRLLGDSDSEEEQKEAASSGDDSGRDRE 310
Query: 378 PSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAADIPITETEAYQLLKKA 437
P + + + K L+ + E E SG G+ + K + +K
Sbjct: 311 PPVQRKSEDRTQLKGGKRLSG--SSEDEEDSGKGEPTAKGS----------------RKM 352
Query: 438 TLQDNTNQTENRFQKTDASVSHLSGLNIG--SGAFETKTANKIASEASFSSSEGSP 491
+T+ E+ ++ + S S G G K++ K + +S SSS+GSP
Sbjct: 353 ARLGSTSGEESDLER-EVSDSEAGGGPQGERKNRSSKKSSRKGRTRSSSSSSDGSP 407
>gi|190194423 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 37.4 bits (85), Expect = 0.035
Identities = 62/319 (19%), Positives = 121/319 (37%), Gaps = 39/319 (12%)
Query: 232 QEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALS 291
+E E+E+ ++ D + +E +L+S E + +G+ + L L E LS
Sbjct: 50 EENEKETAVSTEDDSHHKAEKSSVLKSKEESHEQSAE-QGKSSSQELGLKDQEDSDGHLS 108
Query: 292 -------TEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDN 344
TE ++ S EK+ S N PG + +D + + + +E+
Sbjct: 109 VNLEYAPTEGTLDIKEDMSEPQEKKLSENTDFLAPGVSSFTD---SNQQESITKREENQE 165
Query: 345 SVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILN-DNSGIKEAKPAVWLNSVPTRE 403
+ + L ++ G R + + P+I N + KE N R+
Sbjct: 166 QPRNYSHHQLNRSSKHSQGLRDQGNQEQD----PNISNGEEEEEKEPGEVGTHNDNQERK 221
Query: 404 QEVS-SGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSG 462
E+ K +++N +D + E++ + K + + + ++A + +
Sbjct: 222 TELPREHANSKQEEDNTQSDDILEESDQPTQVSKMQEDEFDQGNQEQEDNSNAEMEEENA 281
Query: 463 LNIGSGAFETKTANKIASEASFSSSEGSP----LSRHENKKKPVINLKSNALWDESDDSN 518
N+ NK E + S EG +S H+ ++ ++ L + +DD N
Sbjct: 282 SNV----------NKHIQETEWQSQEGKTGLEAISNHKETEEKTVS--EALLMEPTDDGN 329
Query: 519 SEIEAALRPRNHNTDDSDD 537
+ PRNH DD D
Sbjct: 330 TT------PRNHGVDDDGD 342
>gi|190341024 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 37.4 bits (85), Expect = 0.035
Identities = 62/319 (19%), Positives = 121/319 (37%), Gaps = 39/319 (12%)
Query: 232 QEEEEESWSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALS 291
+E E+E+ ++ D + +E +L+S E + +G+ + L L E LS
Sbjct: 50 EENEKETAVSTEDDSHHKAEKSSVLKSKEESHEQSAE-QGKSSSQELGLKDQEDSDGHLS 108
Query: 292 -------TEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDN 344
TE ++ S EK+ S N PG + +D + + + +E+
Sbjct: 109 VNLEYAPTEGTLDIKEDMSEPQEKKLSENTDFLAPGVSSFTD---SNQQESITKREENQE 165
Query: 345 SVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILN-DNSGIKEAKPAVWLNSVPTRE 403
+ + L ++ G R + + P+I N + KE N R+
Sbjct: 166 QPRNYSHHQLNRSSKHSQGLRDQGNQEQD----PNISNGEEEEEKEPGEVGTHNDNQERK 221
Query: 404 QEVS-SGCGDKSKKENVAADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSG 462
E+ K +++N +D + E++ + K + + + ++A + +
Sbjct: 222 TELPREHANSKQEEDNTQSDDILEESDQPTQVSKMQEDEFDQGNQEQEDNSNAEMEEENA 281
Query: 463 LNIGSGAFETKTANKIASEASFSSSEGSP----LSRHENKKKPVINLKSNALWDESDDSN 518
N+ NK E + S EG +S H+ ++ ++ L + +DD N
Sbjct: 282 SNV----------NKHIQETEWQSQEGKTGLEAISNHKETEEKTVS--EALLMEPTDDGN 329
Query: 519 SEIEAALRPRNHNTDDSDD 537
+ PRNH DD D
Sbjct: 330 TT------PRNHGVDDDGD 342
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 37.0 bits (84), Expect = 0.046
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 15/239 (6%)
Query: 129 KSNLSEGKKSAELNSPLRERLSPENRTTDLKCD--SSSGSEGEILTREHIEVEEKRASPP 186
K +LSE ++S E E E+ D D S + + E E +E +
Sbjct: 1038 KESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDEGDSDEE 1097
Query: 187 VSPIPVSEYCESENKWSQEKHSPWEGVSDHL-AHREPKSQKPFRKMQEEEEESWSTSSDL 245
+ V+ E+ + + S +E S+ + E + + R+ +EEEEE + +
Sbjct: 1098 ETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMVAEES 1157
Query: 246 TISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPD 305
S +D + E PG G+E + + E E VA + + +
Sbjct: 1158 MASAGPEDFEQDGEEAALAPGAPAVDSLGME--EEVDIETEAVAPEERPSMLDEPPLPVG 1215
Query: 306 SEKESSTNAPTREPGQTPD-----SDVPRAQVGQHVATLK-----EHDNSVKEEATALL 354
E+ + + P EPG + + S P A+ + L EHD V+ E +L
Sbjct: 1216 VEEPADSREPPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMML 1274
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 36.2 bits (82), Expect = 0.078
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 22/213 (10%)
Query: 63 QTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEIG 122
Q A SS+VT ++ +D + SL++ +P T S+EE +++
Sbjct: 471 QAASSSSVTSPIKMKIPIANTEKYMADKKEKSGSLKLRIPIPPTDKSASKEELKMKIKVS 530
Query: 123 SNTRHGKSNLSEGKK-------SAELNSPLRERLSPENRTTDLK---CDSSSGSEGEILT 172
S+ RH S+ GK S + +E S + T+ K S S S G +
Sbjct: 531 SSERHSSSDEGSGKSKHSSPHISRDHKEKHKEHPSSRHHTSSHKHSHSHSGSSSGGSKHS 590
Query: 173 REHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQ 232
+ I R SP+ +S S + S K H+ K
Sbjct: 591 ADGIPPTVLR-----SPVGLSSDGISSSSSSSRKRL-------HVNDASHNHHSKMSKSS 638
Query: 233 EEEEESWSTSSDLTISISEDDLILESPEPQPNP 265
+ S S+SS + IS + + P P P P
Sbjct: 639 KSSGSSSSSSSSVKQYISSHNSVFNHPLPPPPP 671
>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
Length = 1709
Score = 36.2 bits (82), Expect = 0.078
Identities = 60/264 (22%), Positives = 97/264 (36%), Gaps = 34/264 (12%)
Query: 185 PPVSPIPVSEYCESENKWSQEKHSPWEGV-SDHLAH-REPKSQKPFRKMQEEEEESWSTS 242
PP S S ++E S ++ P EG S+ LAH +S F QE ES S
Sbjct: 763 PPRSLFQSSRKPDAEEVSSDSENIPEEGDGSEELAHGHSSQSLGKFEDEQEVFSESKSFV 822
Query: 243 SDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLS 302
DL+ S E DL S +AL+ E E + TE + ++ +
Sbjct: 823 EDLSSSEEELDLRCLS-----------------QALE----EPEDAEVFTESSSYVEKYN 861
Query: 303 SPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEEC 362
+ D S + P R P Q + +V E N ++ L +
Sbjct: 862 TSDDCSSSEEDLPLRHPAQALGKPKNQQEVSSASNNTPEEQNDFMQQ----LPSRCPSQP 917
Query: 363 GRRSAIHSSESSCSLPSILNDNSGIKEAKP----AVWLNSVPTREQEVSSGCGDKSKKEN 418
+ + S+ + + + ++ P W+N P EQEVSS + +E+
Sbjct: 918 IMNPTVQQQVPTSSVGTSIKQSDSVEPIPPRHPFQPWVN--PKVEQEVSSSPKSMAVEES 975
Query: 419 VAADIPITETEAYQLLKKATLQDN 442
++ P+ Q L +Q N
Sbjct: 976 ISMK-PLPPKLLCQPLMNPKVQQN 998
>gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens]
Length = 860
Score = 35.8 bits (81), Expect = 0.10
Identities = 55/259 (21%), Positives = 98/259 (37%), Gaps = 36/259 (13%)
Query: 302 SSPDSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEE 361
SS S + ST++PT P TP P ++ Q V H + + + L+ +
Sbjct: 414 SSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDNN----NEKLSPK 469
Query: 362 CGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVAA 421
G + S S + S IK W +S+ + + + S C + ++E+
Sbjct: 470 PGTGEPVLSLHYSTEGTT----TSTIKLNFTDEW-SSIASSSRGIGSHCKSEGQEESFVP 524
Query: 422 DIPITETEAYQLLK--KATLQDNT---------NQTENRFQKT----------DASVSHL 460
+ E K + + +D T N EN T D++
Sbjct: 525 QSSVQPPEGDSETKAPEESSEDVTKYQEGVSAENPVENHINITQSDKFTAKPLDSNSGER 584
Query: 461 SGLNI--GSGAFETKTANKIASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSN 518
+ LN+ G E +++ A E S + + +EN P ++ A + +
Sbjct: 585 NDLNLDRSCGVPEESASSEKAKEPETSDQTSTESATNENNTNPEPQFQTEATGPSAHEET 644
Query: 519 SEIEAALRPRNHNTDDSDD 537
S ++AL+ +TDDSDD
Sbjct: 645 STRDSALQ----DTDDSDD 659
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 35.8 bits (81), Expect = 0.10
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 129 KSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVS 188
+ + E +KS E R + PE + K + ++ + GE E E EE + P +
Sbjct: 133 REDSKEAEKSGEATDGARPQALPEPMQ-ESKAEGNNQAPGE----EEEEEEEATNTHPPA 187
Query: 189 PIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPK-SQKP---FRKMQEEEEESWSTSSD 244
+P +Y + + E G+S L RE S +P ++ +EEEEE + + +
Sbjct: 188 SLPSQKYPGPQAEGDSE------GLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAGE 241
Query: 245 LTISISEDDLILESPEPQPNPGGKMEGEDGIEAL 278
+ E ++ +P P +GE EAL
Sbjct: 242 EAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEAL 275
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.8 bits (81), Expect = 0.10
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 270 EGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPR 329
E +DG+ + + R ++ST ++ + +SPD + S N R G+ S
Sbjct: 7 EEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDG-RTSPINEDIRSSGRNSPSAAST 65
Query: 330 AQVGQHVATLKEHDNSVKEEATALLRK---------ALTEECGRRSAIHSSESSCSLPSI 380
+ T+K+ VKEEA++ L+ + TEE R S+ + S P+
Sbjct: 66 SSNDSKAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNS 125
Query: 381 LNDNSG 386
++ G
Sbjct: 126 PSEGEG 131
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.10
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 270 EGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPR 329
E +DG+ + + R ++ST ++ + +SPD + S N R G+ S
Sbjct: 561 EEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDG-RTSPINEDIRSSGRNSPSAAST 619
Query: 330 AQVGQHVATLKEHDNSVKEEATALLRK---------ALTEECGRRSAIHSSESSCSLPSI 380
+ T+K+ VKEEA++ L+ + TEE R S+ + S P+
Sbjct: 620 SSNDSKAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNS 679
Query: 381 LNDNSG 386
++ G
Sbjct: 680 PSEGEG 685
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.10
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 270 EGEDGIEALKLIHAEQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPR 329
E +DG+ + + R ++ST ++ + +SPD + S N R G+ S
Sbjct: 561 EEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDG-RTSPINEDIRSSGRNSPSAAST 619
Query: 330 AQVGQHVATLKEHDNSVKEEATALLRK---------ALTEECGRRSAIHSSESSCSLPSI 380
+ T+K+ VKEEA++ L+ + TEE R S+ + S P+
Sbjct: 620 SSNDSKAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNS 679
Query: 381 LNDNSG 386
++ G
Sbjct: 680 PSEGEG 685
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 35.4 bits (80), Expect = 0.13
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 284 EQERVALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSDVPRA-----QVGQHVAT 338
E++ A + E+ LQ ++S + E +T AP EP PD + A +G+
Sbjct: 12 EEKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAAACEVNDLGEEEEE 71
Query: 339 LKEHDNSVKEEATALLRKALTEECGRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNS 398
+E D +E+ E+ G A +E+S P I D KP L
Sbjct: 72 EEEEDEEEEEDDD----DDELEDEGEEEASMPNENSVKEPEIRCDE------KPEDLLEE 121
Query: 399 VPTREQEVSSGCGDKSKKENVAADIPITETEA 430
T +E C + + A IP T+ EA
Sbjct: 122 PKTTSEETLEDCSEVTP----AMQIPRTKEEA 149
>gi|40217799 hypothetical protein LOC79864 isoform 1 [Homo sapiens]
Length = 778
Score = 35.4 bits (80), Expect = 0.13
Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 14/260 (5%)
Query: 59 HSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHC 118
H R++ S ++DS + + S+ KS + + L G + P + +
Sbjct: 202 HGARRSKPFSELSDSDLEEKSSSLSPYVKSSSSHNEVFLP-GSRGPRRRKSKQHFVEKNK 260
Query: 119 LEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEV 178
L +G T S L K + P E++S R TD K + E E + +
Sbjct: 261 LTLGLPTPKTDSYLQLHNKKRGESHP--EQISYPVRVTD-KTSIQNAKEMENAAIDPEDK 317
Query: 179 EEKRASPPVSPIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEES 238
+RA + ES + + P + V+DH R P K ++ + +
Sbjct: 318 WHQRAQQLKNYQEHWSQYESTKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLK 377
Query: 239 WSTSSDLTISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCIL 298
ST+ ++T S + P Q N ++ E++ ++HA V S
Sbjct: 378 SSTTEEVTASQGNQN---NPPRQQQNQNKPLDTSTKPESIVIMHASNNDVQAS------- 427
Query: 299 QTLSSPDSEKESSTNAPTRE 318
+ L S + ++ S+T AP ++
Sbjct: 428 RALRSHNLKETSNTFAPPKQ 447
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 35.0 bits (79), Expect = 0.17
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 141 LNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESEN 200
+ PL E R L+ E L E E+ K P P E E+E
Sbjct: 1120 MEPPLEEESLEAKRVQGLEGPRKDLEEAGGLGTEFSELPGKSRDPWEPPREGREESEAEA 1179
Query: 201 KWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILESPE 260
E+ P ++ L H + P+ EE EE ++ S + ++ ++P
Sbjct: 1180 PRGAEEAFP----AETLGHTGSDAPSPWPLGSEEAEEDVPPVL-VSPSPTYTPILEDAPG 1234
Query: 261 PQPNPGGKMEGEDGI----EALKLIHAEQERVALSTEKNCILQTLSSPDSE-KESSTNAP 315
PQP G E G+ EAL + +EQE + + P E +ES +
Sbjct: 1235 PQPQAEGSQEASWGVQGRAEALGKVESEQEELGSG-------EIPEGPQEEGEESREESE 1287
Query: 316 TREPGQT-PDS 325
E G+T PDS
Sbjct: 1288 EDELGETLPDS 1298
Score = 30.4 bits (67), Expect = 4.3
Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 197 ESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESW-----STSSDLTISISE 251
E EN+ + SP G + L ++Q+P R +++E +E++ L E
Sbjct: 671 EKENQ--EPLRSPEVGDEEALRPLTKENQEPLRSLEDENKEAFRSLEKENQEPLKTLEEE 728
Query: 252 DDLILESPEPQPNPGGKMEGEDGIEALKLIHAE--QERVALSTEKNCILQTLSSPDSEKE 309
D I+ E + + + E E L+ + E Q R +L + L+ D E
Sbjct: 729 DQSIVRPLETENHKSLRSLEEQDQETLRTLEKETQQRRRSLGEQDQMTLRPPEKVDLEPL 788
Query: 310 SSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKE 348
S + P + + + ++ + V +K + + E
Sbjct: 789 KSLDQEIARPLENENQEFLKSLKEESVEAVKSLETEILE 827
>gi|239753231 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 948
Score = 34.7 bits (78), Expect = 0.23
Identities = 64/309 (20%), Positives = 121/309 (39%), Gaps = 43/309 (13%)
Query: 89 DNIDGKASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRER 148
+N DG+ S + + + S+E+ + SN++ GKK E++ + +
Sbjct: 492 ENKDGEKSRTVSSRKKPASKATSDEKDSF------------SNITRGKKDGEISRKVSSQ 539
Query: 149 LSPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVSPIPVSEYCESENKWSQEKHS 208
P + T + DS G + RE+ + E+ R P + + ++
Sbjct: 540 KPPTLKGTSDEEDSVLG-----IARENKDGEKSRTVSSEKPPGLKASSDEKDSVLNIARG 594
Query: 209 PWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLTISISEDDLILE-SPEPQPNPGG 267
G R +KP + +E++S+ S++T + ++ + S + P G
Sbjct: 595 KKYG---EKTKRVSSRKKPSLEATSDEKDSF---SNITREKKDGEISRKVSSQKPPALKG 648
Query: 268 KMEGEDGIEALKLIHAEQERV-ALSTEKNCILQTLSSPDSEKESSTNAPTREPGQTPDSD 326
+ ED + + + + E+ +S+EK L + EK+S N + D +
Sbjct: 649 TSDEEDSVLGIARENKDGEKSRTVSSEKP---PGLKATSDEKDSVLNIARGK----KDGE 701
Query: 327 VPRAQVGQHVATLKEHDNSVKEEATALLRKALTEECGRRSAIHSSE-------SSCSLPS 379
R Q TLK + +E ++L A + G +S SSE +S S
Sbjct: 702 KTRTVSSQKPPTLK----ATSDEEDSVLSIARENKDGEKSRTVSSEKPSGLKATSAEKDS 757
Query: 380 ILNDNSGIK 388
+LN G K
Sbjct: 758 VLNIARGKK 766
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.121 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,475,994
Number of Sequences: 37866
Number of extensions: 1109647
Number of successful extensions: 3397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 3184
Number of HSP's gapped (non-prelim): 396
length of query: 540
length of database: 18,247,518
effective HSP length: 107
effective length of query: 433
effective length of database: 14,195,856
effective search space: 6146805648
effective search space used: 6146805648
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.