Guide to the Human Genome
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Name: C20orf19 Sequence: fasta or formatted (540aa) NCBI GI: 247301334
Description:

non-protein coding RNA 153 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {673aa} non-protein coding RNA 153 isoform 1
alt prot {570aa} non-protein coding RNA 153 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         34           2
 C cysteine            1.7          9           1
 D aspartate           5.6         30           2
 E glutamate          11.1         60           5
 F phenylalanine       1.5          8           1
 G glycine             4.8         26           2
 H histidine           3.1         17           1
 I isoleucine          4.6         25           1
 K lysine              6.7         36           3
 L leucine             6.9         37           2
 M methionine          1.5          8           1
 N asparagine          5.6         30           1
 P proline             5.7         31           2
 Q glutamine           4.4         24           1
 R arginine            4.3         23           2
 S serine             14.3         77           3
 T threonine           6.3         34           2
 V valine              4.1         22           2
 W tryptophan          0.9          5           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   non-protein coding RNA 153 isoform 3 
C20orf19              0.997   non-protein coding RNA 153 isoform 2 
C20orf19              0.997   non-protein coding RNA 153 isoform 1 
DSPP                  0.023   dentin sialophosphoprotein preproprotein 
PNN                   0.019   pinin, desmosome associated protein 
NEFH                  0.018   neurofilament, heavy polypeptide 200kDa 
NEFM                  0.017   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.017   neurofilament, medium polypeptide 150kDa isoform 2 ...
RAPGEF6               0.017   PDZ domain-containing guanine nucleotide exchange fa...
PRDM2                 0.015   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.015   retinoblastoma protein-binding zinc finger protein i...
C10orf18              0.014   hypothetical protein LOC54906 
DCAF6                 0.013   IQ motif and WD repeats 1 isoform a 
PHIP                  0.013   pleckstrin homology domain interacting protein [Homo...
MAP1B                 0.013   microtubule-associated protein 1B 
HIRIP3                0.012   HIRA interacting protein 3 
SPARCL1               0.011   SPARC-like 1 
SPARCL1               0.011   SPARC-like 1 
SETD1B                0.011   SET domain containing 1B 
CCNT2                 0.010   cyclin T2 isoform b 
KIAA1210              0.010   hypothetical protein LOC57481 
DCAF6                 0.010   IQ motif and WD repeats 1 isoform b 
CHGA                  0.010   chromogranin A precursor 
RERE                  0.010   atrophin-1 like protein isoform b 
RERE                  0.010   atrophin-1 like protein isoform a 
RERE                  0.010   atrophin-1 like protein isoform a 
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
C11orf63              0.010   hypothetical protein LOC79864 isoform 1 
NES                   0.010   nestin 
ANKRD36               0.010   PREDICTED: ankyrin repeat domain 36 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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