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Search of human proteins with 24430139
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24430139 RNA polymerase II associated protein 1 [Homo
sapiens]
(1393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens] 2773 0.0
gi|110349719 titin isoform N2-A [Homo sapiens] 40 0.012
gi|203098098 shroom family member 3 protein [Homo sapiens] 38 0.078
gi|33354283 de-etiolated 1 isoform 1 [Homo sapiens] 38 0.078
gi|221136821 de-etiolated 1 isoform 2 [Homo sapiens] 38 0.078
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 37 0.13
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 37 0.17
gi|21735548 centrosomal protein 2 [Homo sapiens] 37 0.17
gi|166064029 angiomotin isoform 1 [Homo sapiens] 36 0.23
gi|148746195 trichohyalin [Homo sapiens] 35 0.50
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.50
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.50
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 35 0.66
gi|20665034 tenascin XB isoform 2 [Homo sapiens] 35 0.66
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 35 0.66
gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens] 34 0.86
gi|112420977 TBP-interacting protein isoform 2 [Homo sapiens] 34 0.86
gi|206725526 signal-induced proliferation-associated protein 1 [... 34 0.86
gi|206725523 signal-induced proliferation-associated protein 1 [... 34 0.86
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 34 0.86
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 33 1.5
gi|215422388 death-domain associated protein isoform a [Homo sap... 33 1.5
gi|215422366 death-domain associated protein isoform b [Homo sap... 33 1.5
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 33 1.5
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 33 1.5
gi|156416022 transmembrane protein 176B isoform b [Homo sapiens] 33 1.5
gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens] 33 1.9
gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens] 33 1.9
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 33 2.5
gi|150417969 voltage-gated sodium channel type V alpha isoform d... 33 2.5
>gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]
Length = 1393
Score = 2773 bits (7187), Expect = 0.0
Identities = 1393/1393 (100%), Positives = 1393/1393 (100%)
Query: 1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD 60
MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
Sbjct: 1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD 60
Query: 61 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN 120
NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
Sbjct: 61 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN 120
Query: 121 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE 180
LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
Sbjct: 121 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE 180
Query: 181 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP 240
GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
Sbjct: 181 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP 240
Query: 241 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA 300
EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
Sbjct: 241 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA 300
Query: 301 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS 360
SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
Sbjct: 301 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS 360
Query: 361 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR 420
LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
Sbjct: 361 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR 420
Query: 421 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD 480
AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
Sbjct: 421 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD 480
Query: 481 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL 540
STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
Sbjct: 481 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL 540
Query: 541 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT 600
ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
Sbjct: 541 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT 600
Query: 601 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL 660
SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
Sbjct: 601 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL 660
Query: 661 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ 720
ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
Sbjct: 661 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ 720
Query: 721 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK 780
RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
Sbjct: 721 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK 780
Query: 781 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT 840
LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
Sbjct: 781 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT 840
Query: 841 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL 900
LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
Sbjct: 841 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL 900
Query: 901 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA 960
LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
Sbjct: 901 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA 960
Query: 961 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP 1020
LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
Sbjct: 961 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP 1020
Query: 1021 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE 1080
EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
Sbjct: 1021 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE 1080
Query: 1081 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE 1140
LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
Sbjct: 1081 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE 1140
Query: 1141 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR 1200
SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
Sbjct: 1141 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR 1200
Query: 1201 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS 1260
LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
Sbjct: 1201 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS 1260
Query: 1261 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD 1320
LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
Sbjct: 1261 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD 1320
Query: 1321 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR 1380
PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
Sbjct: 1321 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR 1380
Query: 1381 LTSTVLQNGVSET 1393
LTSTVLQNGVSET
Sbjct: 1381 LTSTVLQNGVSET 1393
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 40.4 bits (93), Expect = 0.012
Identities = 73/352 (20%), Positives = 130/352 (36%), Gaps = 55/352 (15%)
Query: 9 ESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLDNLPDLPPA 68
E E + +H + +F+ V VK R P+ + + V + + PPA
Sbjct: 9924 EEEEEYIHEEEEFITEEEVVPVIPVKV-------PEVPRKPVPEEKKPVPVPKKKEAPPA 9976
Query: 69 LVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSGVA 128
VP PK+ +P+ E P A + ++ ++ V +PVP V
Sbjct: 9977 KVPEVPKKPEEKVPVLIPKKEKPP----------PAKVPEVPKKPVPEEKVPVPVPKKVE 10026
Query: 129 FPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETP 188
P + + K K + A + EA V EV + P E + P
Sbjct: 10027 APPA--KVPEVPKKPVPEKK-----VPVPAPKKVEAPPAKVPEVPKKLIPEE-----KKP 10074
Query: 189 TPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP--EEILQE 246
TP + + P + + L QE + + EE I + + P EE+L E
Sbjct: 10075 TPVPKKVEAPPPKVPKKREPVPVPVAL-----PQEEEVLFEEEIVPEEEVLPEEEEVLPE 10129
Query: 247 QQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKR 306
++ +L + + L E+ EE+ P P EE F E
Sbjct: 10130 EEEVLPEEEEVL----------PEEEEIPPEEEEVP--PEEEYVPEE---EEFVPEEEVL 10174
Query: 307 DKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQAR 358
+++P+ P A PV K+ + V + K ++ PP + + ++++ +
Sbjct: 10175 PEVKPKVPVPA-PVPEIKKKVTEKKVVIPK---KEEAPPAKVPEVPKKVEEK 10222
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 37.7 bits (86), Expect = 0.078
Identities = 72/275 (26%), Positives = 104/275 (37%), Gaps = 24/275 (8%)
Query: 60 DNLPDLPPALVPSPPKRA---RPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSS 116
D P+ PPA PS P + R PG P + + H + VL K+ + +
Sbjct: 739 DPSPEEPPA--PSHPHTSSLGRRGPG---PGSASALQGFQYGKPHCS-VLEKVSKFEQRE 792
Query: 117 VAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNV 176
P G F + R T S+TSG F + A R +E+ P +G +
Sbjct: 793 QGSQRPSVGGSGFGHNY-RPHRTVSTSSTSGND--FEETKAHIRFSESAEP-LGNGEQHF 848
Query: 177 GPPEGAVTCETPTPRNQGCQLPG-SSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARL 235
G + E + + G QL G +S S +GP + LR Q Q + E R
Sbjct: 849 --KNGELKLEEASRQPCGQQLSGGASDSGRGPQRPDARLLRSQSTFQLSSEPEREPEWRD 906
Query: 236 QAMAPEEILQEQ------QRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANV 289
+ +PE L + + + ++ E AS RP SA+V
Sbjct: 907 RPGSPESPLLDAPFSRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWRPRPSSAHV 966
Query: 290 TKEEPLMSAFASE--PRKRDKLEPEAPALALPVTP 322
P SA AS PR+R + P LA PV P
Sbjct: 967 GLRSPEASASASPHTPRERHSVTPAEGDLARPVPP 1001
>gi|33354283 de-etiolated 1 isoform 1 [Homo sapiens]
Length = 561
Score = 37.7 bits (86), Expect = 0.078
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1206 SFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQ 1265
+F DL+ N H E V F +QRRF T+ A +G H A+R L L Q
Sbjct: 403 NFCDLFRNATLHSE-VQFPCSASSNNFARQIQRRFKDTIINAKYGGHTEAVRRL---LGQ 458
Query: 1266 LPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWC 1301
LP+S + Y+ P +L+L Y V+ RP+ C
Sbjct: 459 LPISAQSYSGSPYLDLSLFS-YDDKWVSVMERPKTC 493
>gi|221136821 de-etiolated 1 isoform 2 [Homo sapiens]
Length = 550
Score = 37.7 bits (86), Expect = 0.078
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 1206 SFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQ 1265
+F DL+ N H E V F +QRRF T+ A +G H A+R L L Q
Sbjct: 392 NFCDLFRNATLHSE-VQFPCSASSNNFARQIQRRFKDTIINAKYGGHTEAVRRL---LGQ 447
Query: 1266 LPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWC 1301
LP+S + Y+ P +L+L Y V+ RP+ C
Sbjct: 448 LPISAQSYSGSPYLDLSLFS-YDDKWVSVMERPKTC 482
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 37.0 bits (84), Expect = 0.13
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 230 ENIARLQAMAPEEILQEQQRLLAQLDPSL-----VAFLRSHSHTQEQTGETASEEQRPGG 284
E + R + +PE+ ++ +L+ LD SL + + + S+ QE + +EE+RPG
Sbjct: 1194 EKVPREERKSPED---KKSMILSVLDTSLQRPAGLIVVHATSNGQEPSRLGGAEEERPGT 1250
Query: 285 PSANVTKEEPLMSAFASEPRKRDKLEPE--APALALPVTPQKEWLHMDTVELEKLHWTQD 342
P P+ SA +EP + +P PA A P E E +L + +
Sbjct: 1251 PE---LAPAPMQSAAVAEPLPSPRAQPPGGTPADAGPGQGSSE-------EEPELVFAVN 1300
Query: 343 LPPVRRQQTQERMQARFSLQGELLAPD 369
LPP + + E + + G + P+
Sbjct: 1301 LPPAQLSSSDEETREELARIGLVPPPE 1327
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 36.6 bits (83), Expect = 0.17
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 158 ARRIAEAKGPSVGEVVPNVG-----PPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTG 212
A + EA S E++ G PP+ + E P +L S HS + + ++
Sbjct: 159 AAELEEASAESEDEMIHPEGVASLLPPDFQSSLERP-------ELELSRHSPRKSSSISE 211
Query: 213 -KGLRDQE----AEQEAQTIHEENIARL-QAMAPEEILQEQQRLLAQLDPSLVAFLRSHS 266
KG D E E+ + + + A+L + P E ++Q+ L L++
Sbjct: 212 EKGDSDDEKPRKGERRSSRVRQARAAKLSEGSQPAEEEEDQETPSRNLRVRADRNLKTEE 271
Query: 267 HTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKE 325
+E+ E +E+ G ++E P++ F E + +++PE P T +E
Sbjct: 272 EEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEEIPRVKPEEMMDERPKTRSQE 330
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 36.6 bits (83), Expect = 0.17
Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 45/301 (14%)
Query: 134 LRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRN- 192
L+ RD + ++ + +S QE AAR AEA ++G+ + E + + R+
Sbjct: 1935 LKERDQELEALRAESQSSRHQEEAARARAEALQEALGKAHAALQGKEQHLLEQAELSRSL 1994
Query: 193 --QGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTI-HEENIARL-QAMAP-EEILQEQ 247
L S + Q + + LR QE E + Q + ++E++ +L QA+A +E L+ Q
Sbjct: 1995 EASTATLQASLDACQAHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQ 2054
Query: 248 QRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANV--------TKEEPLMSAF 299
Q L+ SL ++ + ++Q EE+ G +V KE+ ++
Sbjct: 2055 QEREQLLEKSLAQRVQENMIQEKQNLGQEREEEEIRGLHQSVRELQLTLAQKEQEILE-- 2112
Query: 300 ASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARF 359
E ++R+ LE ALP + + + +++L+ L R Q+ ER+QA
Sbjct: 2113 LRETQQRNNLE------ALPHSHKTSPMEEQSLKLDSLE-------PRLQRELERLQAAL 2159
Query: 360 SLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVIS 419
+ A +++ E+A+ SL + T++ VS + +A+ + A V+
Sbjct: 2160 R---QTEAREIE---------WREKAQDLALSLAQ----TKASVSSLQEVAMFLQASVLE 2203
Query: 420 R 420
R
Sbjct: 2204 R 2204
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 36.2 bits (82), Expect = 0.23
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 39/199 (19%)
Query: 122 PVPSGVAFPA----VFLRSRDTQG----KSATSGKRSIFAQEIAARRIAEAKGPSVGEVV 173
P G A PA + L +R++Q S TSG Q + R++ A+ P +V
Sbjct: 284 PPEYGAARPAQDISLPLSARNSQPHSPTSSLTSGGSLPLLQSPPSTRLSPARHP----LV 339
Query: 174 PNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNL-VTGKGLRDQEAEQEAQTIHEENI 232
PN G + PR Q LP +H QG + ++ GL Q+ +Q+ Q H +
Sbjct: 340 PNQGDHSAHL------PRPQQHFLPNQAH--QGDHYRLSQPGLSQQQQQQQQQHHHHHHH 391
Query: 233 ARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKE 292
+ Q P++ E + + PS +AS + P P A V++
Sbjct: 392 QQQQQQQPQQQPGEAYSAMPRAQPS-----------------SASYQPVPADPFAIVSRA 434
Query: 293 EPLMSAFASEPRK-RDKLE 310
+ ++ + E R R +LE
Sbjct: 435 QQMVEILSDENRNLRQELE 453
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 35.0 bits (79), Expect = 0.50
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 216 RDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGET 275
R+Q+ +E Q E+ + R Q + E+ L+ +Q+L + R +EQ
Sbjct: 373 REQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQ-----LRREQQLRREQQLRR 427
Query: 276 ASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELE 335
EE+R +E+ L + +RD L+ E +K+ L D E
Sbjct: 428 EQEEERHEQKHEQERREQRLKR---EQEERRDWLKREEETERHEQERRKQQLKRDQEEER 484
Query: 336 KLHWTQDLPPVRRQQTQERMQ 356
+ W + RR+Q + R Q
Sbjct: 485 RERWLKLEEEERREQQERREQ 505
Score = 30.8 bits (68), Expect = 9.5
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 23/203 (11%)
Query: 216 RDQEAEQE-AQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSL--VAFLRSHSHTQEQT 272
RD++ E+E Q ++ + + +A E E+Q L Q D R QE+
Sbjct: 125 RDRQLEEEPGQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQERE 184
Query: 273 GETASEEQRP---GGPSANVTKEEPLMSAFASEPRKRDKLEP-----EAPALALPVTPQK 324
A EEQ G + EE L E R++ + E E +K
Sbjct: 185 ERRAEEEQLQSCKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEK 244
Query: 325 EWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEE 384
EW +TV ++ Q+ P R+++ QE + L+ + L +E
Sbjct: 245 EWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQ------------ELRRERQE 292
Query: 385 AERAGYSLQELFHLTRSQVSQQR 407
E+ L+ L R Q ++R
Sbjct: 293 EEQQQQRLRREQQLRRKQEEERR 315
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.0 bits (79), Expect = 0.50
Identities = 60/245 (24%), Positives = 88/245 (35%), Gaps = 16/245 (6%)
Query: 91 PEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRS 150
P LRR Q + V+ + D + L PSG+ P+ SR + T+ +
Sbjct: 505 PRIPLRR--QKLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGP 562
Query: 151 IFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLV 210
++ AE++ P V VP P V TP + LP SS S + + V
Sbjct: 563 VYCVP-HEEAPAESRDPEV-PTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSV 620
Query: 211 TGKG--LRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHT 268
G G L + A +EA+ +++P ++ P + HS
Sbjct: 621 EGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAA 680
Query: 269 QEQTGETASEEQRPGGPSANVTKEEPL-MSAFASE---PRKRDK------LEPEAPALAL 318
+ PS + K P SA E PR RD L EA ALA
Sbjct: 681 AAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAA 740
Query: 319 PVTPQ 323
P P+
Sbjct: 741 PSPPR 745
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.0 bits (79), Expect = 0.50
Identities = 60/245 (24%), Positives = 88/245 (35%), Gaps = 16/245 (6%)
Query: 91 PEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRS 150
P LRR Q + V+ + D + L PSG+ P+ SR + T+ +
Sbjct: 500 PRIPLRR--QKLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGP 557
Query: 151 IFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLV 210
++ AE++ P V VP P V TP + LP SS S + + V
Sbjct: 558 VYCVP-HEEAPAESRDPEV-PTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSV 615
Query: 211 TGKG--LRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHT 268
G G L + A +EA+ +++P ++ P + HS
Sbjct: 616 EGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAA 675
Query: 269 QEQTGETASEEQRPGGPSANVTKEEPL-MSAFASE---PRKRDK------LEPEAPALAL 318
+ PS + K P SA E PR RD L EA ALA
Sbjct: 676 AAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAA 735
Query: 319 PVTPQ 323
P P+
Sbjct: 736 PSPPR 740
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 34.7 bits (78), Expect = 0.66
Identities = 58/280 (20%), Positives = 91/280 (32%), Gaps = 31/280 (11%)
Query: 63 PDLPPALVPSPPKRARP-----------SPGHCLPEDEDPEE---RLRRHDQHITAVLTK 108
P P A VP+P + P SP +P E+P + ++ +
Sbjct: 1065 PTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPASPAAAV 1124
Query: 109 IIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPS 168
+ +S A +P P AFPA + + + +A + + AA A+ S
Sbjct: 1125 PTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAESAS 1184
Query: 169 VGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIH 228
VV + P + PTP + + F P +E A +
Sbjct: 1185 FAAVVATLEEPT-SPAASVPTP----AAMVATLEEFTSP---AASVPTSEEPASLAAAVS 1236
Query: 229 EENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETA---SEEQRPGGP 285
A A + + A L P ++ + T E+ A S + P P
Sbjct: 1237 NPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASP 1296
Query: 286 SANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKE 325
+A V E AS P PE PA+ P E
Sbjct: 1297 AAAVPTPEVAAIPAASVP------TPEVPAIPAAAVPPME 1330
>gi|20665034 tenascin XB isoform 2 [Homo sapiens]
Length = 673
Score = 34.7 bits (78), Expect = 0.66
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 70 VPSPPKRARP---SPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSG 126
VP P + R + G + + P+ + +D +TA ++ +T AV+ P+
Sbjct: 273 VPDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDVQVTAPGAPPLQAETPGSAVDYPLHDL 332
Query: 127 VAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVV-----PNVGPPEG 181
V R +G + TS F + A R EAK + + P V P
Sbjct: 333 VLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPRTALLTWTEPPVRPAGY 392
Query: 182 AVTCETPTPRNQGCQLPGSSHSFQ 205
++ TP +NQ LPG S Q
Sbjct: 393 LLSFHTPGGQNQEILLPGGITSHQ 416
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 34.7 bits (78), Expect = 0.66
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 70 VPSPPKRARP---SPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSG 126
VP P + R + G + + P+ + +D +TA ++ +T AV+ P+
Sbjct: 3842 VPDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDVQVTAPGAPPLQAETPGSAVDYPLHDL 3901
Query: 127 VAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVV-----PNVGPPEG 181
V R +G + TS F + A R EAK + + P V P
Sbjct: 3902 VLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPRTALLTWTEPPVRPAGY 3961
Query: 182 AVTCETPTPRNQGCQLPGSSHSFQ 205
++ TP +NQ LPG S Q
Sbjct: 3962 LLSFHTPGGQNQEILLPGGITSHQ 3985
>gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens]
Length = 1236
Score = 34.3 bits (77), Expect = 0.86
Identities = 80/343 (23%), Positives = 121/343 (35%), Gaps = 44/343 (12%)
Query: 690 LYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETI----- 744
L +L P+L AL ++ L + + L + +A+L L L+ + + +
Sbjct: 642 LQLDLQPILAEALHILASFLRKNQ-RALRLATLAALDALAQSQGLSLPPSAVQAVLAELP 700
Query: 745 -----SDSAEASLSAT-PSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVAC 798
SD A L+ + VT Q + L + P L + L+LL P + P
Sbjct: 701 ALVNESDMHVAQLAVDFLATVTQAQPASLVEVSGPVLSELLRLLRSPLL-------PAGV 753
Query: 799 LLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPTLGS------LWDSLRHCS 852
L + QA C D +L L P+ Q G ++ SL C
Sbjct: 754 LAAAEGFLQALVGTRPPCV-----DYAKLISLLTAPVYEQAVDGGPGLHKQVFHSLARCV 808
Query: 853 LLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLC 912
LS EA + L C P S F L + + Q + L
Sbjct: 809 AA---LSAACPQEAASTASRLVCDARSPHSSTGVKVLAFLSLAEVGQVAGPGHQ--RELK 863
Query: 913 GQLAAILAAPG-----LQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLAL-ALAQKAA 966
L L +P +Y L V G+ P PF + E QYL L +L +
Sbjct: 864 AVLLEALGSPSEDVRAAASYALGRVGAGSLPDFLPFLLEQIEAEPRRQYLLLHSLREALG 923
Query: 967 ALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRL 1009
A QP Y ALL + G+E T ++ C+ +L
Sbjct: 924 AAQP---DSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKL 963
>gi|112420977 TBP-interacting protein isoform 2 [Homo sapiens]
Length = 1119
Score = 34.3 bits (77), Expect = 0.86
Identities = 80/343 (23%), Positives = 121/343 (35%), Gaps = 44/343 (12%)
Query: 690 LYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETI----- 744
L +L P+L AL ++ L + + L + +A+L L L+ + + +
Sbjct: 549 LQLDLQPILAEALHILASFLRKNQ-RALRLATLAALDALAQSQGLSLPPSAVQAVLAELP 607
Query: 745 -----SDSAEASLSAT-PSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVAC 798
SD A L+ + VT Q + L + P L + L+LL P + P
Sbjct: 608 ALVNESDMHVAQLAVDFLATVTQAQPASLVEVSGPVLSELLRLLRSPLL-------PAGV 660
Query: 799 LLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPTLGS------LWDSLRHCS 852
L + QA C D +L L P+ Q G ++ SL C
Sbjct: 661 LAAAEGFLQALVGTRPPCV-----DYAKLISLLTAPVYEQAVDGGPGLHKQVFHSLARCV 715
Query: 853 LLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLC 912
LS EA + L C P S F L + + Q + L
Sbjct: 716 AA---LSAACPQEAASTASRLVCDARSPHSSTGVKVLAFLSLAEVGQVAGPGHQ--RELK 770
Query: 913 GQLAAILAAPG-----LQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLAL-ALAQKAA 966
L L +P +Y L V G+ P PF + E QYL L +L +
Sbjct: 771 AVLLEALGSPSEDVRAAASYALGRVGAGSLPDFLPFLLEQIEAEPRRQYLLLHSLREALG 830
Query: 967 ALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRL 1009
A QP Y ALL + G+E T ++ C+ +L
Sbjct: 831 AAQP---DSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKL 870
>gi|206725526 signal-induced proliferation-associated protein 1
[Homo sapiens]
Length = 1042
Score = 34.3 bits (77), Expect = 0.86
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 220 AEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEE 279
AE+ + +H +N +++P L ++ +L P L+ + ET +
Sbjct: 825 AEERTEFLHSQN-----SLSPRSSLSDEAPVLPNTTPDLLLATTAKPSVPSADSETPLTQ 879
Query: 280 QRPGGPSANVTKEEPLMSAFAS 301
RPG PS + K P AS
Sbjct: 880 DRPGSPSGSEDKGNPAPELRAS 901
>gi|206725523 signal-induced proliferation-associated protein 1
[Homo sapiens]
Length = 1042
Score = 34.3 bits (77), Expect = 0.86
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 220 AEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEE 279
AE+ + +H +N +++P L ++ +L P L+ + ET +
Sbjct: 825 AEERTEFLHSQN-----SLSPRSSLSDEAPVLPNTTPDLLLATTAKPSVPSADSETPLTQ 879
Query: 280 QRPGGPSANVTKEEPLMSAFAS 301
RPG PS + K P AS
Sbjct: 880 DRPGSPSGSEDKGNPAPELRAS 901
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 34.3 bits (77), Expect = 0.86
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 22/205 (10%)
Query: 201 SHSFQGPNLVTGKGLRDQEAEQEA---QTIHEENIARLQAMAPEEILQEQQRLLAQLDPS 257
+H QG L + + + E Q A + + EN+ ++ EI E Q+ L + D
Sbjct: 1709 NHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEI--EWQKQLLERDKR 1766
Query: 258 LVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALA 317
+ + + S + E S+E+ ++ +++ + + + ++
Sbjct: 1767 EIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1826
Query: 318 LPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLG 377
L + +K +D + +KL D+ ++ QQ QE+ +A SLQ EL ++ HL
Sbjct: 1827 LELNVRKLQQELDQLNRDKLSLHNDISAMQ-QQLQEKREAVNSLQEEL----ANVQDHLN 1881
Query: 378 LHHHGEEAERAGYSLQELFHLTRSQ 402
L + Q+L H T+ Q
Sbjct: 1882 L------------AKQDLLHTTKHQ 1894
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 33.5 bits (75), Expect = 1.5
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 494 LMPSQEDKEDEDEDEECPAGKAKRKSP 520
+ QED E+EDE+EE AGK KSP
Sbjct: 470 MQEGQEDDEEEDEEEEAAAGKDGDKSP 496
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 33.5 bits (75), Expect = 1.5
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 494 LMPSQEDKEDEDEDEECPAGKAKRKSP 520
+ QED E+EDE+EE AGK KSP
Sbjct: 470 MQEGQEDDEEEDEEEEAAAGKDGDKSP 496
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 33.5 bits (75), Expect = 1.5
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 494 LMPSQEDKEDEDEDEECPAGKAKRKSP 520
+ QED E+EDE+EE AGK KSP
Sbjct: 482 MQEGQEDDEEEDEEEEAAAGKDGDKSP 508
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 33.5 bits (75), Expect = 1.5
Identities = 58/246 (23%), Positives = 87/246 (35%), Gaps = 20/246 (8%)
Query: 704 VVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLV---T 760
+ P T PQP+ + LT + TL +TP T S++ + S TP+L T
Sbjct: 74 LTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSST 133
Query: 761 WTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDW 820
T P + P R L S P + + P+ + PSS P
Sbjct: 134 PTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLT 193
Query: 821 LQDMQRLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCP 880
L+ P+L++ + +L S R + P S P L PS + P
Sbjct: 194 PSSTPTLTPS-SRPILTRSSTPTLTPSSRP---ILTP-SSTPTL--TPSSRPILTRSSTP 246
Query: 881 RLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHL 940
L+ + + + P T L+ NT P L + P + P L
Sbjct: 247 TLTPSSTPTLTPSNTPTLTPSNTPTLTPSN----------TPTLTPSSTPTLTPSSTPTL 296
Query: 941 TPFSAW 946
TP S W
Sbjct: 297 TPSSLW 302
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 33.5 bits (75), Expect = 1.5
Identities = 58/246 (23%), Positives = 87/246 (35%), Gaps = 20/246 (8%)
Query: 704 VVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLV---T 760
+ P T PQP+ + LT + TL +TP T S++ + S TP+L T
Sbjct: 74 LTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSST 133
Query: 761 WTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDW 820
T P + P R L S P + + P+ + PSS P
Sbjct: 134 PTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLT 193
Query: 821 LQDMQRLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCP 880
L+ P+L++ + +L S R + P S P L PS + P
Sbjct: 194 PSSTPTLTPS-SRPILTRSSTPTLTPSSRP---ILTP-SSTPTL--TPSSRPILTRSSTP 246
Query: 881 RLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHL 940
L+ + + + P T L+ NT P L + P + P L
Sbjct: 247 TLTPSSTPTLTPSNTPTLTPSNTPTLTPSN----------TPTLTPSSTPTLTPSSTPTL 296
Query: 941 TPFSAW 946
TP S W
Sbjct: 297 TPSSLW 302
>gi|156416022 transmembrane protein 176B isoform b [Homo sapiens]
Length = 233
Score = 33.5 bits (75), Expect = 1.5
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 361 LQGELLAPDVDLPTHLGLHHHGEEA----ERAGYSLQE-LFHLTRSQVSQQR----ALAL 411
+ G +A PTH+ +H H E A +AG SL++ LFH + S R LAL
Sbjct: 8 VNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLAL 67
Query: 412 HVLAQVISRAQAGEFGDRLAGSVLSLLLDAGF 443
V+A + +LAG + SLL AGF
Sbjct: 68 GVIAAGAGAIVHEKHPGKLAGYISSLLTLAGF 99
>gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens]
Length = 306
Score = 33.1 bits (74), Expect = 1.9
Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 37/263 (14%)
Query: 133 FLRSRDTQGKSATSGKRSIFAQEIAAR-RIAEAKGPSVGEVVP-NVGPPEGAVTCETPTP 190
F + D +T+G+ S + + + R+AE G VG P ++ PP G + E
Sbjct: 67 FSKGSDGVAAVSTNGETSTLSISMESMPRVAEDAG-DVGAAEPLHLEPPAGPLEVEQ--- 122
Query: 191 RNQGCQLPGS-SHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPE--EILQEQ 247
QL H + + G+ EA + + ++ + RL+ E E E
Sbjct: 123 -----QLQAEIKHLRKTLESLAGQLQAQVEANEGSSHLNRQQDERLREWKAELWEEQGET 177
Query: 248 QRLLAQLDPSLVAFLRSHSHT-QEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKR 306
R Q D + ++ S +H +EQ + +Q+ +++E L + +
Sbjct: 178 GRSSVQKDRTTISHALSQNHQLEEQLAKVKQMQQQVAAYQQLTSEKEALHRQLLLQTQLM 237
Query: 307 DKLEP-EAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGEL 365
D+L+ EA A+ E H + E TQ+ QQ Q+ +Q++ SL
Sbjct: 238 DQLQQQEAQGKAVA-----EMAHQELKE------TQERLEATSQQNQQ-LQSQMSLMA-- 283
Query: 366 LAPDVDLPTHLGLHHHGEEAERA 388
LP G HH EE ERA
Sbjct: 284 ------LPGE-GTGHHSEEEERA 299
>gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens]
Length = 217
Score = 33.1 bits (74), Expect = 1.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 278 EEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKL 337
+E+ PGG +A T E P+++ P + PEA + PV P E DT +
Sbjct: 145 QERDPGGITAGSTDEPPMLTKEEPVPELLEAEAPEAYPVFEPVPPVPEAAQGDTED---- 200
Query: 338 HWTQDLPPVRR 348
++ PP++R
Sbjct: 201 --SEGAPPLKR 209
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 32.7 bits (73), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 493 PLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRP-------PPD 529
P+ ++ D +D++EDEE G + S ++ES+P PPD
Sbjct: 1048 PIAVAESDTDDQEEDEENSLGTEEESSKQQESQPVSGGPEAPPD 1091
>gi|150417969 voltage-gated sodium channel type V alpha isoform d
[Homo sapiens]
Length = 1998
Score = 32.7 bits (73), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 493 PLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRP-------PPD 529
P+ ++ D +D++EDEE G + S ++ES+P PPD
Sbjct: 1048 PIAVAESDTDDQEEDEENSLGTEEESSKQQESQPVSGGPEAPPD 1091
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,552,172
Number of Sequences: 37866
Number of extensions: 3109191
Number of successful extensions: 14467
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 14160
Number of HSP's gapped (non-prelim): 382
length of query: 1393
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1278
effective length of database: 13,892,928
effective search space: 17755161984
effective search space used: 17755161984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.