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Search of human proteins with 24308368
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308368 EP300 interacting inhibitor of differentiation 2B
[Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308368 EP300 interacting inhibitor of differentiation 2B [H... 316 6e-87
gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens] 82 2e-16
gi|169163721 PREDICTED: similar to EID2 protein [Homo sapiens] 51 5e-07
gi|239747780 PREDICTED: hypothetical protein XP_002348293 [Homo ... 51 5e-07
gi|239741723 PREDICTED: hypothetical protein XP_002342306 [Homo ... 51 5e-07
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 38 0.003
gi|37693995 Kruppel-like factor 13 [Homo sapiens] 35 0.036
gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens] 34 0.048
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 34 0.048
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 34 0.062
gi|18079216 CASK interacting protein 1 [Homo sapiens] 33 0.081
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 33 0.11
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 33 0.11
gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens] 33 0.14
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 32 0.18
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 32 0.18
gi|116734689 socius isoform 3 [Homo sapiens] 32 0.18
gi|116734681 socius isoform 1 [Homo sapiens] 32 0.18
gi|116734679 socius isoform 2 [Homo sapiens] 32 0.18
gi|91208420 bassoon protein [Homo sapiens] 32 0.31
gi|33186895 selenoprotein V [Homo sapiens] 32 0.31
gi|194097341 period 1 [Homo sapiens] 31 0.40
gi|110832843 TBP-associated factor 4 [Homo sapiens] 31 0.40
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 31 0.40
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 31 0.40
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 31 0.40
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 31 0.53
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 31 0.53
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 31 0.53
gi|118402582 cell division cycle 20 [Homo sapiens] 31 0.53
>gi|24308368 EP300 interacting inhibitor of differentiation 2B [Homo
sapiens]
Length = 161
Score = 316 bits (809), Expect = 6e-87
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MAEPTGLLEMSELPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARM 60
MAEPTGLLEMSELPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARM
Sbjct: 1 MAEPTGLLEMSELPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARM 60
Query: 61 PGPVPGPIPSSVPGLASAPDPHQQLAFLEINRQLLFREYLDGSSMIPVRLLRDFEERRRL 120
PGPVPGPIPSSVPGLASAPDPHQQLAFLEINRQLLFREYLDGSSMIPVRLLRDFEERRRL
Sbjct: 61 PGPVPGPIPSSVPGLASAPDPHQQLAFLEINRQLLFREYLDGSSMIPVRLLRDFEERRRL 120
Query: 121 FVEGCKAREAAFDADPPQMDFAAVAFTVALTASEALSPLAD 161
FVEGCKAREAAFDADPPQMDFAAVAFTVALTASEALSPLAD
Sbjct: 121 FVEGCKAREAAFDADPPQMDFAAVAFTVALTASEALSPLAD 161
>gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens]
Length = 236
Score = 82.4 bits (202), Expect = 2e-16
Identities = 77/226 (34%), Positives = 98/226 (43%), Gaps = 75/226 (33%)
Query: 10 MSELPGDSSVPQVGTASGVSDVLRG----------------------AVGGGVRVQEARE 47
MS+LP DSSVPQ G A+G DV + A G V ARE
Sbjct: 1 MSKLPADSSVPQTGAANGDRDVPQAEVGRGRREPAPAQPEEAGEGAMAAARGGPVPAARE 60
Query: 48 G---------------------------------PVAEAARS-----MARMPG-PVPGPI 68
G P A AAR +AR+ G PV
Sbjct: 61 GRMAAARAAPAAAARGAPVAAAALARAAAAGRESPAAAAAREARMAEVARLLGEPVDEEG 120
Query: 69 PSSVP-------GLASAP--DPHQQLAFLEINRQLLFREYLDGSSMIPVRLLRDFEERRR 119
P P GLA+ P L+ L IN Q R YL+ + P R+ ++ EERRR
Sbjct: 121 PEGRPRSRHGNGGLAALPYLRLRHPLSVLGINYQQFLRHYLENYPIAPGRI-QELEERRR 179
Query: 120 LFVEGCKAREAAFDAD----PPQMDFAAVAFTVALTASEALSPLAD 161
FVE C+AREAAFDA+ P ++D + FT+ALTASE ++PL +
Sbjct: 180 RFVEACRAREAAFDAEYQRNPHRVDLDILTFTIALTASEVINPLIE 225
>gi|169163721 PREDICTED: similar to EID2 protein [Homo sapiens]
Length = 156
Score = 50.8 bits (120), Expect = 5e-07
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 111 LRDFEERRRLFVEGCKAREAAFDAD----PPQMDFAAVAFTVALTASEALSPLAD 161
+++ E RR E C+AREAAFDA+ P +MD + T ALTASEA SPL +
Sbjct: 68 MQELAEGRRRLAEACRAREAAFDAEQQRNPRRMDSDILTLTTALTASEATSPLTE 122
>gi|239747780 PREDICTED: hypothetical protein XP_002348293 [Homo
sapiens]
Length = 546
Score = 50.8 bits (120), Expect = 5e-07
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 111 LRDFEERRRLFVEGCKAREAAFDAD----PPQMDFAAVAFTVALTASEALSPLAD 161
+++ E RR E C+AREAAFDA+ P +MD + T ALTASEA SPL +
Sbjct: 382 MQELAEGRRRLAEACRAREAAFDAEQQRNPRRMDSDILTLTTALTASEATSPLTE 436
>gi|239741723 PREDICTED: hypothetical protein XP_002342306 [Homo
sapiens]
Length = 488
Score = 50.8 bits (120), Expect = 5e-07
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 111 LRDFEERRRLFVEGCKAREAAFDAD----PPQMDFAAVAFTVALTASEALSPLAD 161
+++ E RR E C+AREAAFDA+ P +MD + T ALTASEA SPL +
Sbjct: 382 MQELAEGRRRLAEACRAREAAFDAEQQRNPRRMDSDILTLTTALTASEATSPLTE 436
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 38.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 48 GPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
GP+ A++PGP+PG IP +PG A P P
Sbjct: 97 GPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSP 130
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 13 LPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSV 72
+PG + +P S + + G + G V++ GP+ A +PGP+ GP
Sbjct: 121 IPGPAQIP-----SPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPN 175
Query: 73 PGLASAPDP 81
PG P+P
Sbjct: 176 PGPIPGPNP 184
Score = 37.0 bits (84), Expect = 0.007
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 11 SELPGDSSVPQVGTASGVSDV---LRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGP 67
+++P P G SG + RG + G + GP++ PGP+PGP
Sbjct: 125 AQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPIS--GPFSGPNPGPIPGP 182
Query: 68 IPSSVPGLASAPDP 81
P +PG S P P
Sbjct: 183 NPGPIPGPISGPIP 196
Score = 36.2 bits (82), Expect = 0.013
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 15 GDSSVPQVGTAS------GVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPI 68
G + P V AS G S +L A + +A GP A + + P PGPI
Sbjct: 40 GARAAPLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPI 99
Query: 69 PSSVPGLASAPDP 81
P+ +PG A P P
Sbjct: 100 PAPIPGPAQIPGP 112
Score = 34.3 bits (77), Expect = 0.048
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 13 LPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSV 72
+PG + +P G G + G + G ++ P+ ++PGP GPIP +
Sbjct: 103 IPGPAQIP--GPLPGS---IPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPI 157
Query: 73 PGLASAPDP 81
G A P P
Sbjct: 158 SGPAPIPGP 166
Score = 34.3 bits (77), Expect = 0.048
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 13 LPGDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSV 72
+PG SVP G G + G + G GP+ +PGP+ GP P +
Sbjct: 195 IPGPISVPIPGPIPGP---ISGPISG------PNPGPIP------GPIPGPISGPNPGPI 239
Query: 73 PGLASAPDP 81
PG S P+P
Sbjct: 240 PGPISGPNP 248
Score = 33.9 bits (76), Expect = 0.062
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 13 LPGDSSVPQVGTASG-----VSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGP 67
+PG + P G SG +S + G + G + GP++ GP PGP
Sbjct: 179 IPGPNPGPIPGPISGPIPGPISVPIPGPIPGPI------SGPIS----------GPNPGP 222
Query: 68 IPSSVPGLASAPDP 81
IP +PG S P+P
Sbjct: 223 IPGPIPGPISGPNP 236
Score = 28.9 bits (63), Expect = 2.0
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 25/94 (26%)
Query: 13 LPGDSSVPQVGTASG-VSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPV----PGP 67
+PG S P G G +S G + G + + GP+ S A++PGP PGP
Sbjct: 227 IPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGP 286
Query: 68 I--------------------PSSVPGLASAPDP 81
I P S PG S P P
Sbjct: 287 ILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAP 320
Score = 28.9 bits (63), Expect = 2.0
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 13 LPGDSSVPQVGTASGVSDVLR-------GAVGGGVRVQEAREGPVAEAARSMARMPGPVP 65
+P + +P G G +L G++ G + GP +P P+P
Sbjct: 269 IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGP------GSGSVPAPIP 322
Query: 66 GP--IPSSVPGLASAPD-----PHQQLAFLEINRQLLFREYLDGSSM 105
GP +P+ P +PD P QL F LL + L+GSS+
Sbjct: 323 GPGSLPAPAPLWPQSPDASDFLPDTQL-FPHFTELLLPLDPLEGSSV 368
Score = 28.1 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 49 PVAEAARSMARMPGPVPGPI--PSSVPGLASAPDP 81
P+ A+ +PG +PGPI P+ +P AP P
Sbjct: 102 PIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIP 136
>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
Length = 288
Score = 34.7 bits (78), Expect = 0.036
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 44 EAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAP 79
E REG A AR+ R+P P P P G A+AP
Sbjct: 82 ERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAP 117
>gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens]
Length = 187
Score = 34.3 bits (77), Expect = 0.048
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 3 EPTGLLEMSELPGDSSVPQVGTASGVSDV-LRGAVGGGVRVQEAREGPV----------A 51
E + L+M +PG+ +PQ+ SG ++ LR + G +++E EGP+
Sbjct: 12 EESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEE--EGPMEEEEAQPMAAP 69
Query: 52 EAARSMARMPGPVPGPIPSSVPGL-ASAPDPHQQLAFLEINRQLLFREYLDGSSMIPVRL 110
E RS+A GP G P V G + D ++ E + E L G+ R+
Sbjct: 70 EGKRSLAN--GPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGAG---YRV 124
Query: 111 LRDFEERRRLFVEGCKAREAAFD 133
EE ++F+ + RE A D
Sbjct: 125 SAALEEADKMFL---RTREPALD 144
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 34.3 bits (77), Expect = 0.048
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 14 PGDSSVPQVGTASGVSDVL--RGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSS 71
PG++ VP G++ + +G G G + GP + S PGP P P
Sbjct: 1680 PGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRG 1739
Query: 72 VPGLASAPDP 81
PG P P
Sbjct: 1740 PPGHLGVPGP 1749
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 33.9 bits (76), Expect = 0.062
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 43 QEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQLAFLEI 90
+EA + P A+AA P P P P+P VP A AP PH + L +
Sbjct: 3231 KEAAKTPDAKAA------PTPTPAPVPVPVPLPAPAPAPHGEARILTV 3272
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 33.5 bits (75), Expect = 0.081
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 17/75 (22%)
Query: 7 LLEMSELP-GDSSVPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVP 65
LL +E P S+PQ T G + VL V G V GP A PGP P
Sbjct: 810 LLPPTERPMSPRSLPQSPTHRGFAYVLPQPVEGEV-------GPAA---------PGPAP 853
Query: 66 GPIPSSVPGLASAPD 80
P+P++VP L P+
Sbjct: 854 PPVPTAVPTLCLPPE 868
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 33.1 bits (74), Expect = 0.11
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 VLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQL 85
+LR A G +A G +A S A P P GP PS+V +S+P P +L
Sbjct: 73 LLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVS--SSSPTPPVRL 125
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 33.1 bits (74), Expect = 0.11
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 VLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQL 85
+LR A G +A G +A S A P P GP PS+V +S+P P +L
Sbjct: 73 LLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVS--SSSPTPPVRL 125
>gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens]
Length = 927
Score = 32.7 bits (73), Expect = 0.14
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 26 SGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQL 85
S S RGA GG + E P+AE+ A++ GP+P SS S+ +
Sbjct: 350 SDTSIASRGAPGGPRNITIIVEDPIAESCNDKAKLRGPLPYSGQSSEVSTPSSLYMEYEG 409
Query: 86 AFLEINRQLLFREYLDGSSMIPVRLLRDF 114
+ + +FR +G S+I +DF
Sbjct: 410 GRYLCSGEGMFRRPSEGQSLISYLSEQDF 438
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 32.3 bits (72), Expect = 0.18
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 3 EPTGLLEMSELPGDSS-----VPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSM 57
E T +LE + P + + VGT S + +L G +E+ EGP A S
Sbjct: 725 ETTAILEFTTEPENQTEWEPAYTPVGT-SPLPGILPTWPPTGAATEESTEGPSATEVPSA 783
Query: 58 ARMPGPVPGPIPSSVPGLASAPDP 81
+ P P P PS P + P P
Sbjct: 784 SEEPSPSEVPFPSEEPSPSEEPFP 807
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 32.3 bits (72), Expect = 0.18
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 3 EPTGLLEMSELPGDSS-----VPQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSM 57
E T +LE + P + + VGT S + +L G +E+ EGP A S
Sbjct: 725 ETTAILEFTTEPENQTEWEPAYTPVGT-SPLPGILPTWPPTGAATEESTEGPSATEVPSA 783
Query: 58 ARMPGPVPGPIPSSVPGLASAPDP 81
+ P P P PS P + P P
Sbjct: 784 SEEPSPSEVPFPSEEPSPSEEPFP 807
>gi|116734689 socius isoform 3 [Homo sapiens]
Length = 400
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 34 GAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
G V + AR P + S PGP PGP P PG + P P
Sbjct: 340 GLVPKAALLLRARRAPKSSLKFSPGPCPGPGPGPSPGPGPGPSPGPGP 387
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG P P
Sbjct: 371 PGPSPGPGPGPSPGPGPGPSP 391
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG + P P
Sbjct: 375 PGPGPGPSPGPGPGPSPCPGP 395
>gi|116734681 socius isoform 1 [Homo sapiens]
Length = 487
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 34 GAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
G V + AR P + S PGP PGP P PG + P P
Sbjct: 427 GLVPKAALLLRARRAPKSSLKFSPGPCPGPGPGPSPGPGPGPSPGPGP 474
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG P P
Sbjct: 458 PGPSPGPGPGPSPGPGPGPSP 478
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG + P P
Sbjct: 462 PGPGPGPSPGPGPGPSPCPGP 482
>gi|116734679 socius isoform 2 [Homo sapiens]
Length = 520
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 34 GAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
G V + AR P + S PGP PGP P PG + P P
Sbjct: 460 GLVPKAALLLRARRAPKSSLKFSPGPCPGPGPGPSPGPGPGPSPGPGP 507
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG P P
Sbjct: 491 PGPSPGPGPGPSPGPGPGPSP 511
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 61 PGPVPGPIPSSVPGLASAPDP 81
PGP PGP P PG + P P
Sbjct: 495 PGPGPGPSPGPGPGPSPCPGP 515
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.6 bits (70), Expect = 0.31
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 20 PQVGTASGVSDVLRGAVGGGVRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAP 79
P G G GGG + P A AARS A P P PGP P PG S
Sbjct: 25 PGPGPGPGAGKPPSAPAGGG-------QLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTS 77
Query: 80 ---DPHQQL 85
DP + L
Sbjct: 78 RRLDPKEPL 86
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 31.6 bits (70), Expect = 0.31
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 43 QEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQLAF 87
++ P + S++ GP PGP+P+ P A++P P F
Sbjct: 167 EDPEPAPSLKLIPSVSSEAGPAPGPLPTRTPLAANSPGPTLDFTF 211
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 31.2 bits (69), Expect = 0.40
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 57 MARMPGPVPGPIPSSVPGLASAPDP 81
M +PG PGP PS P APDP
Sbjct: 744 MEDLPGLAPGPAPSPAPSPTVAPDP 768
Score = 26.6 bits (57), Expect = 9.9
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 16/66 (24%)
Query: 61 PGPVPGPIPSSVPGLASAPDPH----------------QQLAFLEINRQLLFREYLDGSS 104
PGP P P PS APD + ++ AFL R L LD SS
Sbjct: 752 PGPAPSPAPSPTVAPDPAPDAYRPVGLTKAVLSLHTQKEEQAFLSRFRDLGRLRGLDSSS 811
Query: 105 MIPVRL 110
P L
Sbjct: 812 TAPSAL 817
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.2 bits (69), Expect = 0.40
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 48 GPVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQL 85
GP A AAR+ PGP PGP P PG + P Q L
Sbjct: 162 GPAALAARA-GPGPGPGPGPGPGPGPGKPAGPGAAQTL 198
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 31.2 bits (69), Expect = 0.40
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQLA 86
P E A + AR P PVP P P P AP ++A
Sbjct: 271 PELELALTPARAPSPVPAPAPEPEPAPTPAPGSELEVA 308
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 31.2 bits (69), Expect = 0.40
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQLA 86
P E A + AR P PVP P P P AP ++A
Sbjct: 216 PELELALTPARAPSPVPAPAPEPEPAPTPAPGSELEVA 253
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 31.2 bits (69), Expect = 0.40
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 37 GGGVRVQEAREGPVAEAAR-----SMARMPGPVPGPIPSSV 72
GG R + R+ AEA + R PGP P P P+SV
Sbjct: 68 GGAARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPASV 108
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 0.53
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA A + A P P P P P+ V A AP P
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAP 193
Score = 28.9 bits (63), Expect = 2.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 50 VAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
VA A + A P P P P P + P A AP P
Sbjct: 164 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAP 195
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQ 84
P A + P P P P P+ P A APD Q
Sbjct: 175 PAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQ 210
Score = 28.1 bits (61), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 52 EAARSMARMPGPVPGPIPSSVPGLASAPDP 81
EA + +P P P P VP LA AP P
Sbjct: 120 EAPEQLPSVPVPAPASTPPPVPVLAPAPAP 149
Score = 28.1 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA P P P P P+ P +AP P
Sbjct: 157 PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP 189
Score = 27.3 bits (59), Expect = 5.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
P A + A P PV P P+ P A AP P
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 201
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 40 VRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
V V P A + A + P P P P+ P A AP P
Sbjct: 164 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAP 205
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 0.53
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA A + A P P P P P+ V A AP P
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAP 193
Score = 28.9 bits (63), Expect = 2.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 50 VAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
VA A + A P P P P P + P A AP P
Sbjct: 164 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAP 195
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQ 84
P A + P P P P P+ P A APD Q
Sbjct: 175 PAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQ 210
Score = 28.1 bits (61), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 52 EAARSMARMPGPVPGPIPSSVPGLASAPDP 81
EA + +P P P P VP LA AP P
Sbjct: 120 EAPEQLPSVPVPAPASTPPPVPVLAPAPAP 149
Score = 28.1 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA P P P P P+ P +AP P
Sbjct: 157 PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP 189
Score = 27.3 bits (59), Expect = 5.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
P A + A P PV P P+ P A AP P
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 201
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 40 VRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
V V P A + A + P P P P+ P A AP P
Sbjct: 164 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAP 205
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 30.8 bits (68), Expect = 0.53
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA A + A P P P P P+ V A AP P
Sbjct: 172 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAP 204
Score = 28.9 bits (63), Expect = 2.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 50 VAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
VA A + A P P P P P + P A AP P
Sbjct: 175 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAP 206
Score = 28.5 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDPHQQ 84
P A + P P P P P+ P A APD Q
Sbjct: 186 PAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQ 221
Score = 28.1 bits (61), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 52 EAARSMARMPGPVPGPIPSSVPGLASAPDP 81
EA + +P P P P VP LA AP P
Sbjct: 131 EAPEQLPSVPVPAPASTPPPVPVLAPAPAP 160
Score = 28.1 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
PVA P P P P P+ P +AP P
Sbjct: 168 PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP 200
Score = 27.3 bits (59), Expect = 5.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 49 PVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
P A + A P PV P P+ P A AP P
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 212
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 40 VRVQEAREGPVAEAARSMARMPGPVPGPIPSSVPGLASAPDP 81
V V P A + A + P P P P+ P A AP P
Sbjct: 175 VAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAP 216
>gi|118402582 cell division cycle 20 [Homo sapiens]
Length = 499
Score = 30.8 bits (68), Expect = 0.53
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 51 AEAARSMARMPGPVPGPIPSSVPGLASAPD-----PHQQLAFLEINRQLLFREYLDGSSM 105
A + S R PG PG S V S P PH+ A +E+ LL +E +S
Sbjct: 46 ANRSHSAGRTPGRTPGKSSSKVQTTPSKPGGDRYIPHRSAAQMEVASFLLSKENQPENSQ 105
Query: 106 IPVRLLRDFEERRRLFVEGCKAREA 130
P + ++ ++ L + G EA
Sbjct: 106 TPTK--KEHQKAWALNLNGFDVEEA 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,760,677
Number of Sequences: 37866
Number of extensions: 346556
Number of successful extensions: 3409
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 2808
Number of HSP's gapped (non-prelim): 639
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.