Guide to the Human Genome
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Name: LOC100287218 Sequence: fasta or formatted (488aa) NCBI GI: 239741723
Description:

PREDICTED: hypothetical protein XP_002342306

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         50           2
 C cysteine            2.3         11           1
 D aspartate           2.5         12           1
 E glutamate           6.1         30           2
 F phenylalanine       2.9         14           2
 G glycine             7.0         34           1
 H histidine           3.3         16           1
 I isoleucine          4.1         20           1
 K lysine              4.5         22           1
 L leucine             9.6         47           2
 M methionine          1.4          7           1
 N asparagine          3.9         19           2
 P proline             5.9         29           2
 Q glutamine           6.8         33           2
 R arginine            7.4         36           3
 S serine              6.4         31           1
 T threonine           7.2         35           2
 V valine              4.3         21           2
 W tryptophan          1.8          9           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342306 
LOC100290310          0.916   PREDICTED: hypothetical protein XP_002348293 
LOC100134071          0.193   PREDICTED: similar to EID2 protein 
EID2                  0.105   CREBBP/EP300 inhibitor 2 
EID2B                 0.027   EP300 interacting inhibitor of differentiation 2B [H...
EID1                  0.008   CREBBP/EP300 inhibitor 1 
PHF20                 0.006   PHD finger protein 20 
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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