Guide to the Human Genome
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Name: C16orf45 Sequence: fasta or formatted (204aa) NCBI GI: 24308354
Description:

hypothetical protein LOC89927 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {187aa} hypothetical protein LOC89927 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         14           1
 C cysteine            2.0          4           2
 D aspartate           6.4         13           2
 E glutamate          13.2         27           2
 F phenylalanine       1.5          3           1
 G glycine             2.0          4           1
 H histidine           1.0          2           1
 I isoleucine          5.9         12           2
 K lysine             11.3         23           2
 L leucine            11.8         24           1
 M methionine          4.9         10           2
 N asparagine          1.5          3           1
 P proline             4.4          9           3
 Q glutamine           5.9         12           1
 R arginine            7.4         15           2
 S serine              3.9          8           2
 T threonine           4.9         10           2
 V valine              4.4          9           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC89927 isoform 1 
C16orf45              0.813   hypothetical protein LOC89927 isoform 2 
MICALL2               0.107   MICAL-like 2 isoform 1 
MICALL1               0.091   molecule interacting with Rab13 
MICALCL               0.086   MICAL C-terminal like 
MICAL3                0.086   microtubule associated monoxygenase, calponin and L...
EHBP1                 0.078   EH domain binding protein 1 isoform 3 
EHBP1                 0.078   EH domain binding protein 1 isoform 3 
EHBP1                 0.078   EH domain binding protein 1 isoform 2 
EHBP1                 0.078   EH domain binding protein 1 isoform 1 
EHBP1L1               0.078   tangerin 
MICAL1                0.059   microtubule associated monoxygenase, calponin and L...
MICAL1                0.059   microtubule associated monoxygenase, calponin and L...
TCHH                  0.053   trichohyalin 
CEP120                0.048   coiled-coil domain containing 100 
LOC645202             0.045   PREDICTED: hypothetical protein LOC645202 
SLK                   0.043   serine/threonine kinase 2 
CCDC46                0.043   coiled-coil domain containing 46 isoform a 
LOC400352             0.040   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.040   PREDICTED: similar to Putative golgin subfamily A m...
BSN                   0.040   bassoon protein 
DEF6                  0.040   differentially expressed in FDCP 6 homolog 
BPTF                  0.040   bromodomain PHD finger transcription factor isoform ...
LOC727832             0.040   golgi autoantigen, golgin subfamily a-like 
CENPE                 0.040   centromere protein E 
GOLGA4                0.037   golgi autoantigen, golgin subfamily a, 4 
MNS1                  0.037   meiosis-specific nuclear structural 1 
LOC283767             0.037   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.037   PREDICTED: Putative golgin subfamily A member 6-lik...
KIF21A                0.037   kinesin family member 21A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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