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Search of human proteins with 24308133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308133 transmembrane and coiled-coil domains 1 [Homo
sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308133 transmembrane and coiled-coil domains 1 [Homo sapiens] 373 e-104
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 38 0.004
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 35 0.038
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.038
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 34 0.065
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 34 0.065
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 34 0.085
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 33 0.11
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens] 33 0.11
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 33 0.14
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|14149669 mitogen-activated protein kinase kinase kinase 7 int... 33 0.14
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 33 0.14
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 33 0.14
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 33 0.14
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 33 0.14
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 33 0.19
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 33 0.19
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 33 0.19
gi|46276863 parathymosin [Homo sapiens] 33 0.19
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 32 0.25
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 32 0.25
gi|148746195 trichohyalin [Homo sapiens] 32 0.25
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 32 0.25
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 32 0.25
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 32 0.25
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 32 0.25
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 32 0.32
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 32 0.32
>gi|24308133 transmembrane and coiled-coil domains 1 [Homo sapiens]
Length = 188
Score = 373 bits (957), Expect = e-104
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MSTMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITES 60
MSTMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITES
Sbjct: 1 MSTMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITES 60
Query: 61 AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 120
AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT
Sbjct: 61 AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 120
Query: 121 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 180
PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP
Sbjct: 121 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 180
Query: 181 PPPSGKFS 188
PPPSGKFS
Sbjct: 181 PPPSGKFS 188
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 38.1 bits (87), Expect = 0.004
Identities = 14/53 (26%), Positives = 36/53 (67%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMV 86
+K +L+ + +K+ K+++K+++ + + GR+++KK ++EEK K+ +L +
Sbjct: 407 EKISKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKKEEKRKDTKPELKKI 459
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQK---KKIERQEEKLKNNN 80
R D + LKA + KL K++E + E A + K++ + E+K K ++
Sbjct: 316 RADSKESLKATTKTAVSKLAKREEVVEEGAKEARSELAKELAKTEKKAKESS 367
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 37.4 bits (85), Expect = 0.008
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+K ++ + E E++ +K EKKK + R++KKK ER+E + +N R
Sbjct: 83 EKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQR 130
Score = 31.6 bits (70), Expect = 0.42
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
R +K +R + +++ KK K+++ E R++K+K ++EE+ K R+
Sbjct: 125 RENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERN 175
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
KR K E EK+ ++ K+++ E R+++KK ER++E+ K R
Sbjct: 162 KRKKEEREKKRERNRKERKKERERKERRERKK-ERKKERRKKKER 205
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+R K E++ +K E++KE E +++KK+ +R+ K + R
Sbjct: 35 ERKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKR 79
Score = 28.1 bits (61), Expect = 4.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMK 89
R + K K KQ + E+KK+ + R+ K++ ER+ +K + R R K
Sbjct: 94 RRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREK 151
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 32 RTDKYKRLKAEVEKQSK----KLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
R ++ KR K E EK+ K K EKKK E +++K+ ER++++ + ++
Sbjct: 40 RREREKR-KREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKE 93
Score = 27.7 bits (60), Expect = 6.1
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+ ++ K K E K+ KK KK+E E ++++++ +R+E + K +
Sbjct: 47 KREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRK 96
Score = 27.7 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+ +K KR K E K+ ++ K+KE + R++K++ +R++EK K +
Sbjct: 60 KKEKKKRKKRERGKERER--KRKEREKQRKERREKERRKRKKEKKKRERK 107
Score = 27.7 bits (60), Expect = 6.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+R + + K+ ++ E+K+E R++KK+ + + EK + NR
Sbjct: 132 ERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNR 176
Score = 27.7 bits (60), Expect = 6.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMK 89
K K E E+ ++ ++KK E ++++ + ER++E+ + R+ R K
Sbjct: 145 KERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKK 197
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 35.0 bits (79), Expect = 0.038
Identities = 14/52 (26%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG--RQQKKKIERQEEKLKNNNRDL 83
++ + + ++ KQ +K+ +++E + E G R+Q++K+ RQE++L+ ++L
Sbjct: 241 EELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKEL 292
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 34 DKYKRLKAEVEKQSKKL-EKKKETITESAGRQQKKKIERQEEKL 76
+K +R + + +Q K+L E++KE + R+Q+++++ QEEK+
Sbjct: 276 EKMRRQEKRLREQEKELREQEKELREQKKLREQEEQMQEQEEKM 319
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQ-QKKKIERQEEKLKNNNR 81
++ D+ R K E ++ KK+ +++E + E Q Q+KK QEEK++ R
Sbjct: 509 MWEQDERLREKEERMREQKKMWQQEEKMREEKKTQEQEKKTWDQEEKMREEER 561
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++ K+++ E E ++ EK +E E R+Q++K+ QEEK++ +
Sbjct: 564 EREKKMREEEEMMREQEEKMQEQ--EEKMREQEEKMWEQEEKMQEQEEKM 611
Score = 27.7 bits (60), Expect = 6.1
Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++ ++++ + EK ++ EK +E E R+Q++K++ QEEK++ +
Sbjct: 636 EQEEKMQEQEEKMWEQEEKMREQ--EEKMREQEEKMQGQEEKMREQEEKM 683
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
K+L+ + E+ ++ EK E E R+Q++K+ RQEE+L + +
Sbjct: 303 KKLREQEEQMQEQEEKMWEQ--EEKMREQEEKMWRQEERLWEQEKQM 347
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 42 EVEKQSKKLEKKKETITESAGRQ-QKKKIERQEEKLKN 78
E E Q ++L ++KE + E Q Q++KI QEEK+++
Sbjct: 427 EKEWQQQRLPEQKEKLWEQEKMQEQEEKIWEQEEKIRD 464
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 35.0 bits (79), Expect = 0.038
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
K KR + E +K++K+ EK+KE E R++K+K +++EE+ + +
Sbjct: 34 KEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEE 81
Score = 32.3 bits (72), Expect = 0.25
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 33 TDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
T++ + + E EK+ K+ EK+KE E +++ K+ E+++EK
Sbjct: 13 TEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEK 55
Score = 31.6 bits (70), Expect = 0.42
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIER-----QEEKLKNNNR 81
R K K+ + E E++ ++ E++KE + GR++KKK +R +EEK K R
Sbjct: 64 RKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRR 118
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 33 TDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
T+K K + E +K+ +K +KKKE +++++ + +EEK + R
Sbjct: 49 TEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRR 97
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
K K + E K+ +K +K KET +++KK +R+ +K K
Sbjct: 28 KRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKK 70
Score = 27.3 bits (59), Expect = 7.9
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 42 EVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
E +++ K+ EK+KE + ++ +K+ E++EE+ K +
Sbjct: 26 EGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRK 65
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 34.3 bits (77), Expect = 0.065
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 35 KYKRLKAEVEKQSKKLEKKKE--TITESAGRQQKKKIERQEEKLKNNNRD 82
K K L + EKQ KKL++ K T+ A +Q K+ + R+++K + N+D
Sbjct: 505 KQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQD 554
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 34.3 bits (77), Expect = 0.065
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 35 KYKRLKAEVEKQSKKLEKKKE--TITESAGRQQKKKIERQEEKLKNNNRD 82
K K L + EKQ KKL++ K T+ A +Q K+ + R+++K + N+D
Sbjct: 543 KQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQD 592
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 33.9 bits (76), Expect = 0.085
Identities = 14/52 (26%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG--RQQKKKIERQEEKLKNNNRDL 83
++ + + ++ KQ +K+ +++E + E G R+Q++K+ RQE++L+ ++L
Sbjct: 279 EELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMWRQEKRLREQEKEL 330
Score = 29.3 bits (64), Expect = 2.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 44 EKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
E++S + +KK E R+Q++K++ QEEK++ ++
Sbjct: 711 EEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEEM 750
Score = 28.9 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+K +R++ E EK +++EK +E E ++Q+KK QEEK++ R
Sbjct: 408 EKEERMR-EQEKMWEQVEKMRE---EKKMQEQEKKTRDQEEKMQEEER 451
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/52 (26%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG--RQQKKKIERQEEKLKNNNRDL 83
+K R + E+ +Q +++++++E + E R+Q++K+ RQEE+L + +
Sbjct: 334 EKELREQKELREQEEQMQEQEEKMWEQEEKMREQEEKMWRQEERLWEQEKQM 385
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 34 DKYKRLKAEVEKQSKKL-EKKKETITESAGRQQKKKIERQEEKL 76
+K R + + +Q K+L E++KE + R+Q+++++ QEEK+
Sbjct: 314 EKMWRQEKRLREQEKELREQEKELREQKELREQEEQMQEQEEKM 357
Score = 27.7 bits (60), Expect = 6.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 46 QSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
+ ++L ++KE + E Q+++KI QEEK+++ +
Sbjct: 766 EQQRLPEQKEKLWEHEKMQEQEKIWEQEEKMRDQEEKM 803
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 42 EVEKQSKKLEKKKETITESAGRQ-QKKKIERQEEKLKN 78
E E Q ++L ++KE + E Q Q++KI QEEK+++
Sbjct: 485 EKEWQQQRLPEQKEKLWEQEKMQEQEEKIWEQEEKIRD 522
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG-RQQKKKIERQEEKLKNNNRDL 83
D+ +R++ + ++Q KK ++E + E R+++KK+ +EE ++ +
Sbjct: 562 DQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMREEEEMMREQEEKM 612
Score = 27.3 bits (59), Expect = 7.9
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++ +K ++ E EK++ EK +E E + R+++KK+ +EE ++ +
Sbjct: 686 IWEQEKMEKKTQEQEKKTWDQEKMRE---EESMREREKKMREEEEMMREQEEKM 736
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 33.5 bits (75), Expect = 0.11
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
K ++ + E+EK+ ++ E+++E E R+++++ ER+ EK K R+
Sbjct: 297 KKEKERQEIEKERRERERERERERERREREREREREREREKEKERERE 344
Score = 28.1 bits (61), Expect = 4.7
Identities = 11/46 (23%), Positives = 29/46 (63%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
+R + E E++ ++ E+++E R+++++ ER++EK + R+
Sbjct: 301 ERQEIEKERRERERERERERERREREREREREREREKEKERERERE 346
>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
Length = 894
Score = 33.5 bits (75), Expect = 0.11
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 26 TWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLS 84
TW+L D +R++ ++ S K +KKK+ ++ A +++KKK ++Q+ + N + D S
Sbjct: 57 TWML---PDVNERIEQFSQEHSVKKKKKKDKHSKKAKKEKKKKSKKQKYEKNNESSDSS 112
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 33.1 bits (74), Expect = 0.14
Identities = 14/61 (22%), Positives = 36/61 (59%)
Query: 26 TWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSM 85
T +++ R + +R + E ++ ++LE+ ++ E RQ++++ ++EE+ K + + M
Sbjct: 1590 TMLIMQRLEAERRARDEERRRQQQLEEMRKREAEDRARQEEERRRQEEERTKRDAEEKVM 1649
Query: 86 V 86
V
Sbjct: 1650 V 1650
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.14
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNN 80
K K+ K + +K+ KK +KKK+ R++K+K +R+++K K N
Sbjct: 119 KKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGN 164
Score = 31.2 bits (69), Expect = 0.55
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 29 LVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
L R +K ++ K + +K+ KK +KKK+ + +++KKK +R+ ++ + R
Sbjct: 99 LPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKR 151
Score = 30.8 bits (68), Expect = 0.72
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
K K+ K + +K+ KK +KKK+ + R++K+K +R++++ K +
Sbjct: 115 KKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKK 161
Score = 30.4 bits (67), Expect = 0.94
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
K K+ K + +K+ KK +KKK+ + R++K+K +R+ +K + +
Sbjct: 113 KKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKK 159
Score = 29.3 bits (64), Expect = 2.1
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+ +K K K + +K+ KK +KKK+ + +++KK+ +++ K K +
Sbjct: 105 KKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKK 154
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMK 89
K+ K + +K+ KK +KKK+ + +++KKK +++ ++ + R R K
Sbjct: 105 KKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKK 157
>gi|14149669 mitogen-activated protein kinase kinase kinase 7
interacting protein 2 [Homo sapiens]
Length = 693
Score = 33.1 bits (74), Expect = 0.14
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 28 VLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIER-----------QEEKL 76
+LV++ + +RL+ E+E Q KKL+K K + E +++++R + ++L
Sbjct: 536 LLVHQKARMERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQQL 595
Query: 77 KNNNRDLSM 85
++ NR L +
Sbjct: 596 RSCNRQLQI 604
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 33.1 bits (74), Expect = 0.14
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
K +K E++K+ KK E KKE E+ ++ KK+++++E+K
Sbjct: 682 KEVKKEIKKEEKK-EPKKEVKKETPPKEVKKEVKKEEKK 719
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 33.1 bits (74), Expect = 0.14
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 40 KAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
KA E+ + +LEK+++ + E R+ ++K ++++E+ + R+L K +
Sbjct: 368 KANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLEL 422
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
R Y+R E+EK+ + L ++++ E +++K++ ER++ +L+
Sbjct: 367 RKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQ 412
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 33.1 bits (74), Expect = 0.14
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 40 KAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
KA E+ + +LEK+++ + E R+ ++K ++++E+ + R+L K +
Sbjct: 368 KANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLEL 422
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
R Y+R E+EK+ + L ++++ E +++K++ ER++ +L+
Sbjct: 367 RKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQ 412
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 33.1 bits (74), Expect = 0.14
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 40 KAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
KA E+ + +LEK+++ + E R+ ++K ++++E+ + R+L K +
Sbjct: 368 KANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLEL 422
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
R Y+R E+EK+ + L ++++ E +++K++ ER++ +L+
Sbjct: 367 RKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQ 412
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 32.7 bits (73), Expect = 0.19
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
+Y+ L +E S + + E I +QQKK++E Q E+ K N ++ +M+ + I
Sbjct: 70 QYQELAVALESSSVTINQLNENIESL--KQQKKQVEHQLEEAKKTNNEIHKAQMEQLETI 127
Score = 30.4 bits (67), Expect = 0.94
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 19 ALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKET--ITESAGRQQKKKIERQEEKL 76
+L +T V+ D+ K L+ EVE KL+ + E ++QK++++ QEE L
Sbjct: 287 SLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEML 346
Query: 77 K 77
+
Sbjct: 347 R 347
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 32.7 bits (73), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
R +K + E EK+ KK EKK+ T G+++++K ER+ E+ K R
Sbjct: 101 RREKENKEGEEKEKRKKK-EKKERGRTSKEGKERERKEERKREERKERER 149
Score = 32.0 bits (71), Expect = 0.32
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
R K K+ + K+ K+ E+K+E E +++KK ER++E+ + +
Sbjct: 115 RKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERK 164
Score = 28.9 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKI-ERQEEKLKNNNR 81
+R K E EK+ ++ E+KK + +++++K ER+E K + NR
Sbjct: 148 ERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNR 193
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQK--KKIERQEEKLKNNNRD 82
++ KR + + K+ ++ EK+K+ + GR K K+ ER+EE+ + ++
Sbjct: 96 ERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKE 146
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMK 89
R + ++ E E++ K+ E+K+ E +++KK+ ER+E + + R R K
Sbjct: 163 RKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKK 220
Score = 28.1 bits (61), Expect = 4.7
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
R ++ KR + + E++ KK E++KE + ++++K++ +EE+ K R
Sbjct: 135 RKEERKREERK-ERERKKEEREKERERKERKKRERKQVGEKEEERKEKER 183
Score = 28.1 bits (61), Expect = 4.7
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMK 89
++ +R K E ++ +K E++KE + ++++ + ER++E+ + R+ R K
Sbjct: 159 ERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKK 214
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRD 82
K K K +++ + E+KKE + R++KK+ +++EE+ K +D
Sbjct: 179 KEKERKERKKRERNRKERKKERERKER-RERKKERKKKEERKKERQKD 225
Score = 27.3 bits (59), Expect = 7.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+R K E++ +K E++KE E G+++KK ++EE+ + R
Sbjct: 58 ERKKERREREKRKREREKERKRER-GKKEKKGERKKEERERKKRR 101
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 32.7 bits (73), Expect = 0.19
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
+Y+ L +E S + + E I +QQKK++E Q E+ K N ++ +M+ + I
Sbjct: 70 QYQELAVALESSSVTINQLNENIESL--KQQKKQVEHQLEEAKKTNNEIHKAQMEQLETI 127
Score = 30.4 bits (67), Expect = 0.94
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 19 ALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKET--ITESAGRQQKKKIERQEEKL 76
+L +T V+ D+ K L+ EVE KL+ + E ++QK++++ QEE L
Sbjct: 287 SLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEML 346
Query: 77 K 77
+
Sbjct: 347 R 347
>gi|46276863 parathymosin [Homo sapiens]
Length = 102
Score = 32.7 bits (73), Expect = 0.19
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
K ++A E +K L++KKE + E A R+++KK +EE+
Sbjct: 4 KSVEAAAELSAKDLKEKKEKVEEKASRKERKKEVVEEEE 42
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 32.3 bits (72), Expect = 0.25
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNN 80
R+ R +++ EK ++K + + SAG+ + K ++ EEK++NN+
Sbjct: 233 RSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNND 281
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 32.3 bits (72), Expect = 0.25
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
+K +R + ++ +Q +K+ ++KE I R+Q++KI QEEK++
Sbjct: 564 EKMRRQEEKIREQEEKIREQKEKI-----REQEEKIWEQEEKIR 602
Score = 30.4 bits (67), Expect = 0.94
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+K + +A++ +Q +K+ +++E I R+Q+KK+ RQEEK+ +
Sbjct: 409 EKRQEQEAKMWRQEEKIREQEEKI-----REQEKKMWRQEEKIHEQEK 451
Score = 30.4 bits (67), Expect = 0.94
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++ +K ++ + +V +Q +K+ ++E I R+Q++K+ RQEEK++ +
Sbjct: 484 MHEQEKIRKQEEKVWRQEEKMHDQEEKI-----REQEEKMWRQEEKIREQEEKI 532
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
+K R + ++++ +K+++++E I R+Q++KI QEEK++
Sbjct: 300 EKMWRQEEKIQEWEEKIQEQEEKI-----REQEEKIREQEEKMR 338
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 34 DKYKRLKAEVEKQSKKLEK------KKETITESAGRQQKKKIERQEEKLK 77
+K + + ++ +Q KK+ + ++E I E RQ+++++ RQEEK++
Sbjct: 423 EKIREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIR 472
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG-RQQKKKIERQEEKLKNNNRDL 83
+K + + +++Q +K+ +++E + E R+Q++KI QEEK++ +
Sbjct: 537 EKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEKIREQEEKIREQKEKI 587
Score = 28.1 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKL 76
+K + + ++++Q +K+ +++E I R+Q++K+ RQEE +
Sbjct: 307 EKIQEWEEKIQEQEEKIREQEEKI-----REQEEKMRRQEEMM 344
Score = 27.7 bits (60), Expect = 6.1
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIE------RQEEKLKNNNRDL 83
+ +K + L+ ++ +Q K E++++ E R+Q+K+ E RQEEK++ +
Sbjct: 375 KEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKI 432
Score = 27.7 bits (60), Expect = 6.1
Identities = 11/45 (24%), Positives = 29/45 (64%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKL 76
R ++ ++ + E+ +Q +K+ +++E + +++KI +QEEK+
Sbjct: 453 REEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKV 497
Score = 27.3 bits (59), Expect = 7.9
Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++R ++ R + E+ +Q +K+ ++++ R+Q++K+ RQEEK+ + +
Sbjct: 464 MWRQEEKIREQEEIWRQKEKMHEQEKI------RKQEEKVWRQEEKMHDQEEKI 511
Score = 27.3 bits (59), Expect = 7.9
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
D+ ++++ + EK ++ EK +E E R+Q++KI QEE ++ +
Sbjct: 506 DQEEKIREQEEKMWRQEEKIREQ--EEKIREQEEKIREQEEMMQEQEEKM 553
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 44 EKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
E++ K E++K E R+Q++KI Q+EK++ +
Sbjct: 555 EQEEKMQEQEKMRRQEEKIREQEEKIREQKEKIREQEEKI 594
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 32.3 bits (72), Expect = 0.25
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 32 RTDKYKRLKAEVEKQ---SKKLEKKKETIT----ESAGRQQKKKIERQEEKLKNNNRDL 83
R ++ KR + E E+Q KKL++K+E + E RQ+++K R+EE+L+ L
Sbjct: 945 REEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQL 1003
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKS 90
R + +R + E +Q K E+++E + + R+ ++ ER+E++L ++ + R+KS
Sbjct: 643 RQQQLRREQQERREQRLKREEEEERLEQRLKREHEE--ERREQELAEEEQEQARERIKS 699
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 32 RTDKYKRLKAEVEKQSKKLEK----KKETITESAGRQQKKKIERQ---EEKLKNNNRDL 83
R ++ KR + E+E+Q ++ E+ +++ + E +++++++ERQ EE+L+ L
Sbjct: 1125 REEREKRRRQELERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEEEQL 1183
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
DK KRL+ + K+ K KKK+ A + KKK E +++K + R
Sbjct: 55 DKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEER 102
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
+++KAE E + K+ E+KK+ E +Q+++ +QEE+
Sbjct: 78 EKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEE 116
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
DK KRL+ + K+ K KKK+ A + KKK E +++K + R
Sbjct: 55 DKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEER 102
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 37 KRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
+++KAE E + K+ E+KK+ E +Q+++ +QEE+
Sbjct: 78 EKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEE 116
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
+Y+ L +E S + + E I +QQKK++E Q E+ K N ++ +M+ + I
Sbjct: 70 QYQELAVALESSSVTISQLNENIESL--KQQKKQVEHQLEEAKKTNNEIHKAQMERLETI 127
Score = 30.4 bits (67), Expect = 0.94
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 19 ALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKET--ITESAGRQQKKKIERQEEKL 76
+L +T V+ D+ K L+ EVE KL+ + E ++QK++++ QEE L
Sbjct: 287 SLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEML 346
Query: 77 K 77
+
Sbjct: 347 R 347
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 35 KYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAI 94
+Y+ L +E S + + E I +QQKK++E Q E+ K N ++ +M+ + I
Sbjct: 70 QYQELAVALESSSVTISQLNENIESL--KQQKKQVEHQLEEAKKTNNEIHKAQMERLETI 127
Score = 30.4 bits (67), Expect = 0.94
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 19 ALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKET--ITESAGRQQKKKIERQEEKL 76
+L +T V+ D+ K L+ EVE KL+ + E ++QK++++ QEE L
Sbjct: 287 SLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEML 346
Query: 77 K 77
+
Sbjct: 347 R 347
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 32.0 bits (71), Expect = 0.32
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETI--TESAGRQQKKKIERQEEKL 76
++ ++ R K ++ +Q +K+ K++E + E R+Q++KI QEEK+
Sbjct: 485 IHEQEEIWRQKEKMHEQEEKIRKQEEKVWRQEEKIREQEEKIREQEEKM 533
Score = 30.4 bits (67), Expect = 0.94
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNR 81
+K + +A++ +Q +K+ +++E I R+Q+KK+ RQEEK+ +
Sbjct: 423 EKRQEQEAKMWRQEEKIREQEEKI-----REQEKKMWRQEEKIHEQEK 465
Score = 30.4 bits (67), Expect = 0.94
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAG--RQQKKKIERQEEKLK 77
+K + ++ KQ +K+ +++E I E R+Q++K+ RQEEK++
Sbjct: 496 EKMHEQEEKIRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEKIR 541
Score = 30.4 bits (67), Expect = 0.94
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 45 KQSKKLEKKKETI--TESAGRQQKKKIERQEEKLK 77
+Q +K+++++ET+ E R+Q+KKI QEEK++
Sbjct: 658 EQEEKMQEQEETMWRQEEKIREQEKKIREQEEKIR 692
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
+K + + + ++Q +K+ K++E I R+Q++KI+ QEEK++ +
Sbjct: 591 EKIREQEEKRQEQEEKMWKQEEKI-----REQEEKIQEQEEKIREQEEKI 635
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLKNNNRDL 83
++R ++ + E+ +Q +K+ +++E I R+Q++K+ RQEEK++ +
Sbjct: 478 MWRQEEKIHEQEEIWRQKEKMHEQEEKI-----RKQEEKVWRQEEKIREQEEKI 526
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGR--QQKKKIERQEEKLKNNNRDL 83
DK R + ++ +Q +K+ +++E I E + +Q++K+ +QEEK++ +
Sbjct: 570 DKMWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKI 621
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
+K R + ++++ +K+++++E I R+Q++KI QEEK++
Sbjct: 300 EKMWRQEEKIQEWEEKIQEQEEKI-----REQEEKIREQEEKMR 338
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 30 VYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKLK 77
++R ++ R + E+ ++ +K+ ++++ E ++Q+ K+ RQEEK++
Sbjct: 533 MWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQEQEDKMWRQEEKIR 580
Score = 28.1 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 34 DKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEKL 76
+K + + ++++Q +K+ +++E I R+Q++K+ RQEE +
Sbjct: 307 EKIQEWEEKIQEQEEKIREQEEKI-----REQEEKMRRQEEMM 344
Score = 28.1 bits (61), Expect = 4.7
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 34 DKYKRLKAEVEKQSKKLEK------KKETITESAGRQQKKKIERQEEKL 76
+K + + ++ +Q KK+ + ++E I E RQ+++++ RQEEK+
Sbjct: 437 EKIREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKI 485
Score = 27.7 bits (60), Expect = 6.1
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 32 RTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIE------RQEEKLKNNNRDL 83
+ +K + L+ ++ +Q K E++++ E R+Q+K+ E RQEEK++ +
Sbjct: 389 KEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKI 446
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 32.0 bits (71), Expect = 0.32
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 20 LLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGRQQKKKIERQEEK 75
L E IT +L R K K E ++ + LEKK+E +T +++++ E++EE+
Sbjct: 124 LQKERITILLPKRPPKTTEDKEETIQKLETLEKKEEEVTSEEDEEKEEEEEKEEEE 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,927,932
Number of Sequences: 37866
Number of extensions: 282119
Number of successful extensions: 4136
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 3084
Number of HSP's gapped (non-prelim): 1084
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.