Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 24308089
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
(1954 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 4008 0.0
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 2719 0.0
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 2704 0.0
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 2701 0.0
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 2701 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 568 e-161
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 543 e-154
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 505 e-142
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 503 e-142
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 495 e-139
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 494 e-139
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 435 e-121
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 426 e-118
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 423 e-118
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 410 e-114
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 394 e-109
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 394 e-109
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 392 e-108
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 387 e-107
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 386 e-106
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 383 e-105
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 382 e-105
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 381 e-105
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 380 e-105
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 289 2e-77
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 281 6e-75
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 281 6e-75
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 278 5e-74
gi|4557565 excision repair cross-complementing rodent repair def... 261 6e-69
gi|216548193 RAD54-like protein [Homo sapiens] 220 1e-56
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 4008 bits (10394), Expect = 0.0
Identities = 1954/1954 (100%), Positives = 1954/1954 (100%)
Query: 1 MRGPVGTEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENK 60
MRGPVGTEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENK
Sbjct: 1 MRGPVGTEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENK 60
Query: 61 CKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDE 120
CKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDE
Sbjct: 61 CKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDE 120
Query: 121 DDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIP 180
DDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIP
Sbjct: 121 DDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIP 180
Query: 181 MSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTISPPLAVSPPQVPQPVPIR 240
MSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTISPPLAVSPPQVPQPVPIR
Sbjct: 181 MSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTISPPLAVSPPQVPQPVPIR 240
Query: 241 KAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRKKGSSSEEDEREESD 300
KAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRKKGSSSEEDEREESD
Sbjct: 241 KAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRKKGSSSEEDEREESD 300
Query: 301 FDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDT 360
FDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDT
Sbjct: 301 FDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDT 360
Query: 361 CPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEEDDHMEFCR 420
CPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEEDDHMEFCR
Sbjct: 361 CPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEEDDHMEFCR 420
Query: 421 VCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEP 480
VCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEP
Sbjct: 421 VCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEP 480
Query: 481 PAPFMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYR 540
PAPFMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYR
Sbjct: 481 PAPFMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYR 540
Query: 541 NYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNH 600
NYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNH
Sbjct: 541 NYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNH 600
Query: 601 SFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLL 660
SFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLL
Sbjct: 601 SFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLL 660
Query: 661 KKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTD 720
KKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTD
Sbjct: 661 KKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTD 720
Query: 721 TILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 780
TILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY
Sbjct: 721 TILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 780
Query: 781 TGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIE 840
TGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIE
Sbjct: 781 TGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIE 840
Query: 841 WACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN 900
WACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN
Sbjct: 841 WACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN 900
Query: 901 LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY 960
LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY
Sbjct: 901 LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY 960
Query: 961 KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLV 1020
KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLV
Sbjct: 961 KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLV 1020
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ
Sbjct: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN
Sbjct: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEEL 1200
KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEEL
Sbjct: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEEL 1200
Query: 1201 FKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDA 1260
FKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDA
Sbjct: 1201 FKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDA 1260
Query: 1261 AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW 1320
AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW
Sbjct: 1261 AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW 1320
Query: 1321 EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED 1380
EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED
Sbjct: 1321 EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED 1380
Query: 1381 EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG 1440
EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG
Sbjct: 1381 EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG 1440
Query: 1441 MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV 1500
MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV
Sbjct: 1441 MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV 1500
Query: 1501 LTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLP 1560
LTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLP
Sbjct: 1501 LTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLP 1560
Query: 1561 APLGLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREE 1620
APLGLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREE
Sbjct: 1561 APLGLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREE 1620
Query: 1621 RPEETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIET 1680
RPEETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIET
Sbjct: 1621 RPEETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIET 1680
Query: 1681 QQNGDKEEDDEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRH 1740
QQNGDKEEDDEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRH
Sbjct: 1681 QQNGDKEEDDEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRH 1740
Query: 1741 DYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQAL 1800
DYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQAL
Sbjct: 1741 DYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQAL 1800
Query: 1801 VIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKV 1860
VIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKV
Sbjct: 1801 VIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKV 1860
Query: 1861 LNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSS 1920
LNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSS
Sbjct: 1861 LNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSS 1920
Query: 1921 QMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVTDI 1954
QMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVTDI
Sbjct: 1921 QMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVTDI 1954
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 2719 bits (7047), Expect = 0.0
Identities = 1373/1954 (70%), Positives = 1566/1954 (80%), Gaps = 106/1954 (5%)
Query: 8 EEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKC-KGKRK 66
EE++ L + +EE+ +D E L KKKKPKK ++ K K KR+
Sbjct: 17 EEDMDALLNNSLPPPHPENEEDPE-----EDLSETETPKLKKKKKPKKPRDPKIPKSKRQ 71
Query: 67 KKE------------GSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRK 114
KKE G E E EE++ +S+SEGSDY+P KKKKKKL KKEKK+K K
Sbjct: 72 KKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSK 131
Query: 115 KKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAK 174
+K+E+E+++DD KEPKSS QL+ +WG++D+D++FSEEDY TLTNYKAFSQF+RPLIA
Sbjct: 132 RKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAA 191
Query: 175 KNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETV-TISPPLAVSPPQV 233
KNPKI +SKMM VLGAKWREFS NNPFKGSS A+ AAA AAAV V ++ V+PP
Sbjct: 192 KNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVAPPPP 251
Query: 234 PQPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKGKKTAGLKFRFGGISNKRKKGSSS 291
P VPIRKAKTKEGKGP R+K KGS KK K KK A LK + GG +KRK+ SS
Sbjct: 252 PVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSSE 311
Query: 292 EEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDG-------DGYETDHQD 344
++D ESDFD ASI+S SV ++ + K+ R K+ G DGYETDHQD
Sbjct: 312 DDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQD 371
Query: 345 YCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEE 404
YCEVCQQGGEIILCDTCPRAYH+VCLDP++EKAPEGKWSCPHCEKEGIQWE K+D+ E E
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGE 431
Query: 405 E------GGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCP 458
E G EEE+D HMEFCRVCKDGGELLCCD CPSSYH+HCLNPPLPEIPNGEWLCP
Sbjct: 432 EILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCP 491
Query: 459 RCTCPPLKGKVQRILHWRWTEPPAPFMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGL 518
RCTCP LKGKVQ+IL W+W +PP+P V P PD +P+ P PKPLEG PER+FFVKW G+
Sbjct: 492 RCTCPALKGKVQKILIWKWGQPPSPTPVPRP-PDADPNTPSPKPLEGRPERQFFVKWQGM 550
Query: 519 SYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKM 578
SYWHCSWV ELQLEL+ VM+RNYQRKNDMDEPP D+G GDE+ KS KRKNKDP +A+M
Sbjct: 551 SYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFG-GDEE-KSRKRKNKDPKFAEM 608
Query: 579 EERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLK 638
EERFYRYGIKPEWMMIHRILNHS DKKG VHYLIKW+DLPYDQ +WE +D++I YD K
Sbjct: 609 EERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFK 668
Query: 639 QAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGG 698
Q+YW HRELM GE+ R K+L KK++ K E+PP+TP VDPTVK+++QP Y+D+TGG
Sbjct: 669 QSYWNHRELMRGEEGRPGKKL----KKVKLRKLERPPETPTVDPTVKYERQPEYLDATGG 724
Query: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
TLHPYQ+EGLNWLRFSWAQGTDTILADEMGLGKTVQT VFLYSLYKEGHSKGP+LVSAPL
Sbjct: 725 TLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPL 784
Query: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIK 818
STIINWEREFEMWAPD YVVTY GDK+SR++IRENEFSFEDNAIR GKK RMKKE +K
Sbjct: 785 STIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVK 844
Query: 819 FHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTP 878
FHVLLTSYELITID AILGSI+WACL+VDEAHRLKNNQSKFFRVLN Y + +KLLLTGTP
Sbjct: 845 FHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTP 904
Query: 879 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK 938
LQNNLEELFHLLNFLTPERF+NLEGFLEEFADI+KEDQIKKLHD+LGPHMLRRLKADVFK
Sbjct: 905 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFK 964
Query: 939 NMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYL 998
NMP+KTELIVRVELS MQKKYYK+ILTRNFEALN++GGGNQVSLLN++MDLKKCCNHPYL
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYL 1024
Query: 999 FPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLED 1058
FPVAA+EAP +PNG YDGS+L+++SGKL+LLQKMLK L++ GHRVLIFSQMTKMLDLLED
Sbjct: 1025 FPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLED 1084
Query: 1059 FLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1118
FLE+EGYKYERIDGGITG +RQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY
Sbjct: 1085 FLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1144
Query: 1119 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLG 1178
DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK+KMMLTHLVVRPGLG
Sbjct: 1145 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLG 1204
Query: 1179 SKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKH 1238
SK+GSM+KQELDDILKFGTEELFKD +++ GG
Sbjct: 1205 SKTGSMSKQELDDILKFGTEELFKD-------------------EATDGG---------- 1235
Query: 1239 GSTPPGDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREE 1298
GDNK+ EDSSVIHYDD AI +LLDRNQD T+DTELQ MNEYLSSFKVAQYVVREE
Sbjct: 1236 -----GDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREE 1290
Query: 1299 D--GVEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQ 1356
+ EEVEREIIKQEE+VDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYND SQ
Sbjct: 1291 EMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQ 1350
Query: 1357 EDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVG 1416
ED++WQD+ SDNQS+YS+ SE+ DEDF+ER E + RR SR+ L++D+DKPLPPLLARVG
Sbjct: 1351 EDRDWQDDQSDNQSDYSVASEEGDEDFDERSE--APRRPSRKGLRNDKDKPLPPLLARVG 1408
Query: 1417 GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLC 1476
GNIEVLGFNARQRKAFLNAIMR+GMPPQDAF + WLVRDLRGKSEKEF+AYVSLFMRHLC
Sbjct: 1409 GNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLC 1468
Query: 1477 EPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEG 1536
EPGADGAETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEHVNG++S P+L E E
Sbjct: 1469 EPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL-AEVEEN 1527
Query: 1537 KKSGEVISSDPNTPVPASPAHLLP-APLGLP----------DKMEAQLGYMDEKDPGAQK 1585
KK + S P TP P++P P P +P + ++ + EK+ +
Sbjct: 1528 KKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTA 1587
Query: 1586 PRQPLEVQALPAALDRVESEDKH---ESPASKERAREERPEETEKAPPSPEQLPREEVLP 1642
P +E PA SED+ E P +E+ + +E + P E +V
Sbjct: 1588 PETAIECTQAPAP----ASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADV-- 1641
Query: 1643 EKEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGKFK 1702
EK+ +K + L + E + K EE++ QNG+ +D +K+ K K +
Sbjct: 1642 --EKVEEKSAIDLTPIVVEDKE----EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQR 1695
Query: 1703 FMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQND 1762
FMFNIADGGFTELH+LWQNEERAA + K Y+IWHRRHDYWLLAGI+ HGYARWQDIQND
Sbjct: 1696 FMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQND 1755
Query: 1763 PRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPA 1822
PRY ILNEPFK E+++GN+LE+KNKFLARRFKLLEQALVIEEQLRRAAYLNM++DP+HP+
Sbjct: 1756 PRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPS 1815
Query: 1823 MALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSML 1882
MALN R AEVECLAESHQHLSKES+AGNKPANAVLHKVL QLEELLSDMKADVTRLP+ +
Sbjct: 1816 MALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATI 1875
Query: 1883 SRIPPVAARLQMSERSILSRLTNRAGDPTIQQGA 1916
+RIPPVA RLQMSER+ILSRL NRA +PT QQ A
Sbjct: 1876 ARIPPVAVRLQMSERNILSRLANRAPEPTPQQVA 1909
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 2704 bits (7008), Expect = 0.0
Identities = 1364/1960 (69%), Positives = 1566/1960 (79%), Gaps = 139/1960 (7%)
Query: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105
+K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++
Sbjct: 50 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 109
Query: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165
KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 110 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 166
Query: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219
QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA
Sbjct: 167 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 226
Query: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268
V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G
Sbjct: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286
Query: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321
KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K
Sbjct: 287 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 346
Query: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370
+ R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 347 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 406
Query: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426
DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG
Sbjct: 407 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 466
Query: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486
ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V
Sbjct: 467 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 522
Query: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543
+P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 523 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 582
Query: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603
RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 583 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 642
Query: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663
KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK
Sbjct: 643 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 702
Query: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723
K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 703 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 759
Query: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783
ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 760 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 819
Query: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843
K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 820 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 879
Query: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903
LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 880 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 939
Query: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 940 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 999
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023
LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 1000 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1059
Query: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083
GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1060 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1119
Query: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV
Sbjct: 1120 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1179
Query: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1180 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1239
Query: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263
+ E G+NK+ EDSSVIHYD+ AI+
Sbjct: 1240 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1261
Query: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323
+LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
Query: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383
LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF
Sbjct: 1322 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1374
Query: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443
+ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1375 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1431
Query: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503
QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1432 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1491
Query: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563
IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP +
Sbjct: 1492 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1547
Query: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
P + EK G + P L++ E+E++ E P R E+
Sbjct: 1548 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1593
Query: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRP------DDTKAEEKEP 1677
ETE PSP E + P K + D++ G E+ P D K+E+ +
Sbjct: 1594 ETEADAPSPAPSLGERLEPRKIPLEDEVP-------GVPGEMEPEPGYRGDREKSEDVKG 1646
Query: 1678 IETQQNGDKEED-DEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIW 1736
+ G ++E G++E+K K +FMFNIADGGFTELHTLWQNEERAA+SSGK+ +IW
Sbjct: 1647 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1706
Query: 1737 HRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLL 1796
HRRHDYWLLAGIV HGYARWQDIQND ++ I+NEPFK+E +KGN+LEMKNKFLARRFKLL
Sbjct: 1707 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1766
Query: 1797 EQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAV 1856
EQALVIEEQLRRAAYLN++Q+P HPAMAL+AR AE ECLAESHQHLSKESLAGNKPANAV
Sbjct: 1767 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1826
Query: 1857 LHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGD----PTI 1912
LHKVLNQLEELLSDMKADVTRLP+ LSRIPP+AARLQMSERSILSRL ++ + P
Sbjct: 1827 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1886
Query: 1913 QQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVT 1952
G + + Y F G NY+QMP G ++T
Sbjct: 1887 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFIT 1926
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 2701 bits (7001), Expect = 0.0
Identities = 1370/1987 (68%), Positives = 1574/1987 (79%), Gaps = 159/1987 (8%)
Query: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105
+K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++
Sbjct: 50 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 109
Query: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165
KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 110 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 166
Query: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219
QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA
Sbjct: 167 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 226
Query: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268
V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G
Sbjct: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286
Query: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321
KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K
Sbjct: 287 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 346
Query: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370
+ R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 347 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 406
Query: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426
DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG
Sbjct: 407 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 466
Query: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486
ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V
Sbjct: 467 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 522
Query: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543
+P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 523 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 582
Query: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603
RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 583 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 642
Query: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663
KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK
Sbjct: 643 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 702
Query: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723
K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 703 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 759
Query: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783
ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 760 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 819
Query: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843
K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 820 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 879
Query: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903
LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 880 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 939
Query: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 940 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 999
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023
LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 1000 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1059
Query: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083
GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1060 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1119
Query: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV
Sbjct: 1120 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1179
Query: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1180 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1239
Query: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263
+ E G+NK+ EDSSVIHYD+ AI+
Sbjct: 1240 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1261
Query: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323
+LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
Query: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383
LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF
Sbjct: 1322 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1374
Query: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443
+ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1375 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1431
Query: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503
QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1432 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1491
Query: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563
IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP +
Sbjct: 1492 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1547
Query: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
P + EK G + P L++ E+E++ E P R E+
Sbjct: 1548 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1593
Query: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKL-----ELSLIHS-RGDSSELRPDDTKAE--EK 1675
ETE PSP E + P K + D++ E+ RGD + + T E E+
Sbjct: 1594 ETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEE 1653
Query: 1676 EPIETQQNGDK---EEDDEGKKEDKKG-----------------------KFKFMFNIAD 1709
+P++ Q++ ++ E D GK+ED KG K +FMFNIAD
Sbjct: 1654 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIAD 1713
Query: 1710 GGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILN 1769
GGFTELHTLWQNEERAA+SSGK+ +IWHRRHDYWLLAGIV HGYARWQDIQND ++ I+N
Sbjct: 1714 GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN 1773
Query: 1770 EPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARL 1829
EPFK+E +KGN+LEMKNKFLARRFKLLEQALVIEEQLRRAAYLN++Q+P HPAMAL+AR
Sbjct: 1774 EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF 1833
Query: 1830 AEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVA 1889
AE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLP+ LSRIPP+A
Sbjct: 1834 AEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIA 1893
Query: 1890 ARLQMSERSILSRLTNRAGD----PTIQQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQM 1945
ARLQMSERSILSRL ++ + P G + + Y F G NY+QM
Sbjct: 1894 ARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQM 1953
Query: 1946 PLGPYVT 1952
P G ++T
Sbjct: 1954 PAGSFIT 1960
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 2701 bits (7001), Expect = 0.0
Identities = 1370/1987 (68%), Positives = 1574/1987 (79%), Gaps = 159/1987 (8%)
Query: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105
+K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++
Sbjct: 109 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 168
Query: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165
KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 169 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 225
Query: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219
QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA
Sbjct: 226 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 285
Query: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268
V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G
Sbjct: 286 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 345
Query: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321
KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K
Sbjct: 346 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 405
Query: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370
+ R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 406 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 465
Query: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426
DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG
Sbjct: 466 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 525
Query: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486
ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V
Sbjct: 526 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 581
Query: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543
+P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 582 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 641
Query: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603
RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 642 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 701
Query: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663
KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK
Sbjct: 702 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 761
Query: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723
K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 762 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 818
Query: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783
ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 819 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 878
Query: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843
K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 879 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 938
Query: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903
LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 939 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 998
Query: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 999 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 1058
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023
LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 1059 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1118
Query: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083
GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1119 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1178
Query: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV
Sbjct: 1179 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1238
Query: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1239 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1298
Query: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263
+ E G+NK+ EDSSVIHYD+ AI+
Sbjct: 1299 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1320
Query: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323
+LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1321 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1380
Query: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383
LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF
Sbjct: 1381 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1433
Query: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443
+ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1434 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1490
Query: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503
QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1491 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1550
Query: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563
IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP +
Sbjct: 1551 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1606
Query: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
P + EK G + P L++ E+E++ E P R E+
Sbjct: 1607 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1652
Query: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKL-----ELSLIHS-RGDSSELRPDDTKAE--EK 1675
ETE PSP E + P K + D++ E+ RGD + + T E E+
Sbjct: 1653 ETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEE 1712
Query: 1676 EPIETQQNGDK---EEDDEGKKEDKKG-----------------------KFKFMFNIAD 1709
+P++ Q++ ++ E D GK+ED KG K +FMFNIAD
Sbjct: 1713 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIAD 1772
Query: 1710 GGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILN 1769
GGFTELHTLWQNEERAA+SSGK+ +IWHRRHDYWLLAGIV HGYARWQDIQND ++ I+N
Sbjct: 1773 GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN 1832
Query: 1770 EPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARL 1829
EPFK+E +KGN+LEMKNKFLARRFKLLEQALVIEEQLRRAAYLN++Q+P HPAMAL+AR
Sbjct: 1833 EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF 1892
Query: 1830 AEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVA 1889
AE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLP+ LSRIPP+A
Sbjct: 1893 AEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIA 1952
Query: 1890 ARLQMSERSILSRLTNRAGD----PTIQQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQM 1945
ARLQMSERSILSRL ++ + P G + + Y F G NY+QM
Sbjct: 1953 ARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQM 2012
Query: 1946 PLGPYVT 1952
P G ++T
Sbjct: 2013 PAGSFIT 2019
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 568 bits (1465), Expect = e-161
Identities = 419/1252 (33%), Positives = 623/1252 (49%), Gaps = 189/1252 (15%)
Query: 508 EREFFVKWAGLSYWHCSWVKELQLELYHTVMYR---NYQRKNDMDE-------PPPFDYG 557
E ++ +KW G SY H +W E L+ + N+++K D + P +Y
Sbjct: 304 EIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYF 363
Query: 558 SGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDL 617
+ ++ SE K + + + + + H + + YL KW L
Sbjct: 364 NCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAH---SRKPAPSNEPEYLCKWMGL 420
Query: 618 PYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDT 677
PY +C+WE + + + N ++ +P R K K ++P
Sbjct: 421 PYSECSWEDEALIGKKFQNCIDSFHSRNN-----SKTIPTRECKALK-------QRPR-- 466
Query: 678 PIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIV 737
V KQP Y+ L YQLEGLNWL SW + ILADEMGLGKT+QTI
Sbjct: 467 -----FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTIS 521
Query: 738 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSF 797
FL L+ + GP+L+ PLST+ +W+REFE+WAP+ VV Y GD SR+ IRE E+
Sbjct: 522 FLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEW-- 579
Query: 798 EDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQS 857
I S K ++KF+ L+T+YE++ D+ +LGSI WA L VDEAHRLKN+ S
Sbjct: 580 ----IHSQTK--------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 627
Query: 858 KFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQI 917
++ L +K +++LL+TGTPLQN+L+EL+ LL+F+ PE+F E F E+ +E+
Sbjct: 628 LLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENGY 686
Query: 918 KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG 977
+ LH +L P +LRR+K DV K++PAK E I+RVE+S +QK+YYK+ILTRN++AL G
Sbjct: 687 QSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRG 746
Query: 978 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
+ LNI+M+LKKCCNH YL + E NG SL++SSGKL+LL K+L +LR
Sbjct: 747 STSGFLNIVMELKKCCNHCYL--IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLR 804
Query: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
+ G+RVLIFSQM +MLD+L ++L + Y ++R+DG I G +R++A+D FNA G++ FCFL
Sbjct: 805 ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Query: 1098 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1157
LSTRAGGLGINLA+ADTV+I+DSDWNP ND+QA +RAHRIGQ K+V IYR VT+ +VEE
Sbjct: 865 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924
Query: 1158 ITQVAKRKMMLTHLVV-------RPGLGSKSG-----SMTKQELDDILKFGTEELFKDDV 1205
I + AK+KM+L HLV+ R L + SG K+EL ILKFG E+LFK ++
Sbjct: 925 IIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK-EL 983
Query: 1206 EGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKL 1265
EG S+ Q + I ++
Sbjct: 984 EGEESEPQ---------------------------------------------EMDIDEI 998
Query: 1266 LDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLR 1325
L + ++ +E LS FKVA + E++ EE+E K + + P+ K +
Sbjct: 999 LRLAETRENEVSTSATDELLSQFKVANFATMEDE--EELEERPHKDWDEIIPEEQRKKVE 1056
Query: 1326 HHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEE 1385
Q++ + L + + K+ ND+ + + + + SE SE ED D ++
Sbjct: 1057 EEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASE----SETEDSDDDK 1112
Query: 1386 RPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP--- 1442
+P+ + R R+ L V GF + + F+ A ++G+P
Sbjct: 1113 KPKRRGRPRSVRKDL--------------------VEGFTDAEIRRFIKAYKKFGLPLER 1152
Query: 1443 ----PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ 1498
+DA V DL+ E + VS + + + +E G R G + +
Sbjct: 1153 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPG-KRRGPTIK 1211
Query: 1499 HVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKS------GEVISSDPNTPVP 1552
++ V S+++ + +EFE ++ IP PE KK + D V
Sbjct: 1212 ISGVQVNVKSIIQHE-EEFEMLHKS------IPVDPEEKKKYCLTCRVKAAHFDVEWGVE 1264
Query: 1553 ASPAHLL---------------PAPLGLPDKMEAQLGYMDEKDPGAQ-KPRQPLEVQALP 1596
LL L L DK+ D+K G Q + R ++ L
Sbjct: 1265 DDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPV--ETDKKPQGKQLQTRADYLLKLLR 1322
Query: 1597 AALDRVESEDKHESPASKERAREERPEETEKAPPSPEQ------LPREEVLPEKEKILDK 1650
L++ + E +K + R+ R ++ K P E+ PR P +E +
Sbjct: 1323 KGLEKKGAVTGGEE--AKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKD 1380
Query: 1651 LELSLIHSRGDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGKFK 1702
L + S ++ K E KE E Q + K D EG KE KK K K
Sbjct: 1381 DGL-------EKSPMKKKQKKKENKENKEKQMSSRK--DKEGDKERKKSKDK 1423
Score = 44.7 bits (104), Expect = 0.001
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 49 KKKKPKKLKENKCKGKRKKK--EGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK 106
KK+KP+ KENK +++ E S+ S+N + E + + +G + SP KKK+KK ++K
Sbjct: 1340 KKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSE-EGEVKDDGLEKSPMKKKQKKKENK 1398
Query: 107 KEKK---AKRKKKDEDEDDNDDGCLKEPKSSG 135
+ K+ + RK K+ D++ KE SG
Sbjct: 1399 ENKEKQMSSRKDKEGDKERKKSKDKKEKPKSG 1430
Score = 42.0 bits (97), Expect = 0.006
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 5 VGTEEELPRLFAEE---------MENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKK 55
V E ++PRL E +N E E +D GLE + KK+K K+
Sbjct: 1346 VKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSP---------MKKKQKKKE 1396
Query: 56 LKENKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKK 115
KENK K +K+ D+ + +D +EK +S G S +K K+ + ++
Sbjct: 1397 NKENKEKQMSSRKDKEGDKERKKSKDKKEKPKS-GDAKSSSKSKRSQGPVHITAGSEPVP 1455
Query: 116 KDEDEDDNDD 125
EDEDD+ D
Sbjct: 1456 IGEDEDDDLD 1465
Score = 38.5 bits (88), Expect = 0.065
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9 EELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKK 68
EE P ++ N S +E ++ PK++ ++LK+ + K K++
Sbjct: 101 EEYPDVYGVRRSNR---SRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQE-KWKQEPS 156
Query: 69 EGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK-KEKKAKRKKKD-EDEDDNDD 125
E ++ + E + E+K K ++K + K ++ KRKK+D DEDD+DD
Sbjct: 157 EDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDD 215
Score = 35.8 bits (81), Expect = 0.42
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 60 KCKGKR--KKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKK-----------KLKDK 106
K +G+R KK+E E SE+E++ +ESE P +KK K K + K
Sbjct: 138 KRRGQRQLKKQEKWKQEPSEDEQEQGTSAESE-----PEQKKVKARRPVPRRTVPKPRVK 192
Query: 107 KEKKAKR-KKKDEDEDDNDDGCLKEPKSSGQLMAEWGL---DDVDYLFSEEDYHTLT 159
K+ K +R K+K +D D DD + PK + A + +D D+ +D +T
Sbjct: 193 KQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMT 249
Score = 35.0 bits (79), Expect = 0.72
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 1736 WHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHK---GNYLEMKNKFLARR 1792
W D LL GI HGY W+ I+ DP + ++ E K G L+ + +L
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317
Query: 1793 FKLLEQAL 1800
KLL + L
Sbjct: 1318 LKLLRKGL 1325
Score = 33.5 bits (75), Expect = 2.1
Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 1566 PDKMEAQLGYMDEKDPGAQK--PRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
P + E + G E +P +K R+P+ + +P RV+ + K + K++ + +
Sbjct: 155 PSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKP--RVKKQPKTQRGKRKKQDSSDEDD 212
Query: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKLELS---LIHSRGDSSELRPDDTKAEEK----- 1675
+ ++AP + + + KE D E LI G+ + + D+++ EK
Sbjct: 213 DDDEAPKRQTRRRAAKNVSYKED--DDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSR 270
Query: 1676 -----------EPIETQQNGDKEEDDEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEE 1723
+ NGD D + +K++ G+ +++ I G++ +H+ W++EE
Sbjct: 271 LGKKGATGASTTVYAIEANGDPSGDFDTEKDE--GEIQYL--IKWKGWSYIHSTWESEE 325
Score = 33.1 bits (74), Expect = 2.7
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 540 RNYQRKNDMD-EPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRIL 598
+N K D D E D +G E++ N + + ++ R + G ++ I
Sbjct: 228 KNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIE 287
Query: 599 NHS-----FDKK---GDVHYLIKWKDLPYDQCTWEIDD 628
+ FD + G++ YLIKWK Y TWE ++
Sbjct: 288 ANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEE 325
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 543 bits (1398), Expect = e-154
Identities = 349/947 (36%), Positives = 510/947 (53%), Gaps = 135/947 (14%)
Query: 508 EREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKS-- 565
E ++ +KW G S+ H +W E T+ +N + +D +Y D++ K
Sbjct: 315 EIQYLIKWKGWSHIHNTWETE------ETLKQQNVRGMKKLD-----NYKKKDQETKRWL 363
Query: 566 EKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKK--GDVHYLIKWKDLPYDQCT 623
+ +D Y ++ + ++ ++ RI+ HS K G Y KW+ LPY +C+
Sbjct: 364 KNASPEDVEYYNCQQELTD-DLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS 422
Query: 624 WEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPT 683
WE + + Y+ + K +D K K
Sbjct: 423 WEDGALISKKFQACIDEYFSRNQ--------------SKTTPFKDCKVLKQRPR-----F 463
Query: 684 VKFDKQPWYIDSTGGT-LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
V KQP YI G L YQL GLNWL SW +G ILADEMGLGKT+QTI FL L
Sbjct: 464 VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYL 523
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ E GP+L+ PLST+ +W+RE + WA V Y GD SR++IR +E++
Sbjct: 524 FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTK- 582
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
++KF++LLT+YE++ D+A LG + WA + VDEAHRLKN+ S ++
Sbjct: 583 -------------RLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKT 629
Query: 863 LNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 922
L +K +++LL+TGTPLQN+L+EL+ LL+F+ PE+F++ E F EE +E LH
Sbjct: 630 LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-GREYGYASLHK 688
Query: 923 LLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 982
L P +LRR+K DV K++PAK E I+R+E+S +QK+YYK+ILTRN++AL+ G+
Sbjct: 689 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 748
Query: 983 LNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSS----LVKSSGKLMLLQKMLKKLRD 1038
LNIMM+LKKCCNH YL P N Y+ L++SSGKL+LL K+L +LR+
Sbjct: 749 LNIMMELKKCCNHCYLIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRE 802
Query: 1039 EGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL 1098
G+RVLIFSQM +MLD+L ++L+Y + ++R+DG I G LR++A+D FNA G++ FCFLL
Sbjct: 803 RGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLL 862
Query: 1099 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERI 1158
STRAGGLGINLA+ADTV+I+DSDWNP ND+QA +RAHRIGQ K+V IYR VT+ SVEE I
Sbjct: 863 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDI 922
Query: 1159 TQVAKRKMMLTHLVVR------------PGLGSKSGSMTKQELDDILKFGTEELFKDDVE 1206
+ AK+KM+L HLV++ S S K+EL ILKFG EELFK+
Sbjct: 923 LERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE--- 979
Query: 1207 GMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLL 1266
P G+ ++ ++ I ++L
Sbjct: 980 -----------------------------------PEGEEQEPQEMD--------IDEIL 996
Query: 1267 DRNQDATDDT-ELQNMNEYLSSFKVAQYVVREEDGVE-EVEREIIKQEENVDPDYWEKLL 1324
R + ++ L +E LS FKVA + +ED +E E ER EE + D +L
Sbjct: 997 KRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLE 1056
Query: 1325 RHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFE 1384
+++ E++ L + + KQ+++N + E ++S GS+ +
Sbjct: 1057 EEERQKELEEIYM-LPRMRNCAKQISFNGS---------EGRRSRSRRYSGSDSDSISEG 1106
Query: 1385 ERPEGQSGRRQ-SRRQLKSDRDKPLPPLL---ARVGGNIEVLGFNAR 1427
+RP+ + R R +K D + + + GG +E L AR
Sbjct: 1107 KRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIAR 1153
Score = 41.2 bits (95), Expect = 0.010
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 26 SEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLEEK 85
SEE+ E DD S K+K K ++ + G + +D SE E +
Sbjct: 122 SEEDSSSSEDSDDS------SSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSC 175
Query: 86 SESEGSDYSP-NKKKKKKLKDKKEKK-------AKRKKKDEDEDDNDDGCLKEPKSSGQL 137
E+E SDY P NK K +K +++ + K K+++ D E+D+D+ K S +
Sbjct: 176 DETE-SDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRR 234
Query: 138 MA 139
A
Sbjct: 235 QA 236
Score = 33.1 bits (74), Expect = 2.7
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 62 KGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK--------------- 106
K ++++++ + S N E+ S SE SD S ++ K+KK KD+
Sbjct: 103 KKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGS 162
Query: 107 -KEKKAKRKKKDEDEDDNDDGCLKEPKS 133
E + +R+K DE ++D EPK+
Sbjct: 163 DSESEEEREKSSCDETESD----YEPKN 186
Score = 31.6 bits (70), Expect = 7.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 1733 YDI-WHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLAR 1791
+DI W + D LL GI +GY W+ I+ DP + ++ + K +
Sbjct: 1249 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADY 1308
Query: 1792 RFKLLEQALVIEEQLRRA 1809
KLL + L +E L A
Sbjct: 1309 LIKLLSRDLAKKEALSGA 1326
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 505 bits (1301), Expect = e-142
Identities = 295/713 (41%), Positives = 410/713 (57%), Gaps = 86/713 (12%)
Query: 506 IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKS 565
I EFFVK+ SY HC W E QL + + + K
Sbjct: 711 IDTEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKL------------------- 751
Query: 566 EKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGD-----VHYLIKWKDLPYD 620
++ + +A MEE + P+++ + R+L SF + D ++YL+KW LPY+
Sbjct: 752 -RQAQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYE 806
Query: 621 QCTWEI-DDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPI 679
TWE+ +D+D+ + +Q + + R P + KK + RD K
Sbjct: 807 DSTWELKEDVDLAKIEEFEQLQASRPDTRRLD--RPPSNIWKKIDQSRDYKN-------- 856
Query: 680 VDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL 739
G L YQLEGLNWL F+W + ILADEMGLGKT+Q+I FL
Sbjct: 857 -----------------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL 899
Query: 740 YSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFED 799
Y + G +GP+L+ APLSTI NWEREF W D VV Y G SR +I++ E F D
Sbjct: 900 YEILLTG-IRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRD 957
Query: 800 NAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKF 859
+ R + +R F ++T++E+I L +IEW C+++DEAHRLKN K
Sbjct: 958 SQGRIIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKL 1009
Query: 860 FRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKK 919
L +++K+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++K
Sbjct: 1010 LEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQK 1069
Query: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-- 977
L +L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L SKG G
Sbjct: 1070 LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGQT 1128
Query: 978 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPN---------GSYDGSSLVKSSGKLML 1028
N +L+N MM+L+KCCNHPYL + E +L + ++++S+GKL+L
Sbjct: 1129 NVPNLVNTMMELRKCCNHPYL--IKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVL 1186
Query: 1029 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1088
+ K+L K++ GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+
Sbjct: 1187 IDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK 1246
Query: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148
P + +F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQNK V +YR
Sbjct: 1247 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRL 1306
Query: 1149 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKSG-----SMTKQELDDILKFG 1196
VTR S E + A K+ L V++ G +S ++K+E++D+L+ G
Sbjct: 1307 VTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG 1359
Score = 33.1 bits (74), Expect = 2.7
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 49 KKKKPKKLKENKCKGK--------RKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKK 100
K K KLKE GK +K+K S+DE+S+ E+ + + + S ++
Sbjct: 581 KTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQ---KRRSN 637
Query: 101 KKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEED 154
+++K KK + K+ E+E G +K K+S L E L SEED
Sbjct: 638 RQIKRKKYAEDIEGKQSEEE---VKGSMKIKKNSAPLPGEQPLQLFVENPSEED 688
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 503 bits (1295), Expect = e-142
Identities = 296/725 (40%), Positives = 414/725 (57%), Gaps = 92/725 (12%)
Query: 504 EGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDG 563
E + EF+VK+ SY HC W LE + + + K
Sbjct: 819 EEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK------------------ 860
Query: 564 KSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILN--HSFDKKGD--VHYLIKWKDLPY 619
++ ++ +++E+ + P+++ + RI++ S D +G+ HYL+KW LPY
Sbjct: 861 ---AKQGQNKFLSEIEDELF----NPDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPY 913
Query: 620 DQCTWE----IDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPP 675
+ TWE ID I ++ L ++ ++ E+PP
Sbjct: 914 EDSTWERRQDIDQAKIEEFEKL------------------------MSREPETERVERPP 949
Query: 676 DTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT 735
D K + Y L YQLEG+NWL F+W + ILADEMGLGKT+Q+
Sbjct: 950 ----ADDWKKSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQS 1003
Query: 736 IVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEF 795
I FLY +Y +G GP+LV APLSTI NWEREF W + VV Y G + SR I+ E
Sbjct: 1004 ITFLYEIYLKG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEM 1061
Query: 796 SFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNN 855
F+D R K + KFH ++T++E+I D L +I W C+V+DEAHRLKN
Sbjct: 1062 YFKDPQGRVIKGSY--------KFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNR 1113
Query: 856 QSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKED 915
K L +++K+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+
Sbjct: 1114 NCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEE 1173
Query: 916 QIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKG 975
Q++KL +L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L SKG
Sbjct: 1174 QVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFL-SKG 1232
Query: 976 GG--NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVL---------PNGSYDGSSLVKSSG 1024
GG N +LLN MM+L+KCCNHPYL + E +L + + ++++++G
Sbjct: 1233 GGQANVPNLLNTMMELRKCCNHPYL--INGAEEKILEEFKETHNAESPDFQLQAMIQAAG 1290
Query: 1025 KLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1084
KL+L+ K+L KL+ GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AID
Sbjct: 1291 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1350
Query: 1085 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1144
RF+ P + +F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V
Sbjct: 1351 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1410
Query: 1145 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGS-----MTKQELDDILKFGTEE 1199
IYR +TR S E + A K+ L V++ G ++ + ++K+E++D+L+ G
Sbjct: 1411 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
Query: 1200 LFKDD 1204
D+
Sbjct: 1471 ALMDE 1475
Score = 43.9 bits (102), Expect = 0.002
Identities = 75/311 (24%), Positives = 117/311 (37%), Gaps = 76/311 (24%)
Query: 37 DDFFPVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLE-EKSESEGSDYSP 95
DD+ P P++KK KK K N + K D+ ++ E ++ +GS
Sbjct: 584 DDYLP-SIEQQPQQKKKKK-KNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGS--QE 639
Query: 96 NKKKKKKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDY 155
KKKKK+ K KK+ K ++ K++ E KEPK+
Sbjct: 640 EKKKKKRSKAKKDPKEPKEPKEKKEP-------KEPKTPK-------------------- 672
Query: 156 HTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF-SANNPFKGSSAAAAAAAVA 214
A K PK P K K + ++N S A+A V
Sbjct: 673 -----------------APKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVN 715
Query: 215 AAVETVTISPPLAVSPPQVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGL 274
+ + L +PP P P +E + PGV+K+ + S+ K+K + T L
Sbjct: 716 KGKTEGSENSDLDKTPPPSPPP--------EEDEDPGVQKR-RSSRQVKRK---RYTEDL 763
Query: 275 KFRFGGISNKRKKGSSSEEDEREESDFDSASIHSASVRSECSAALG----KKSKRRRKKK 330
+F+ S E D+ + + DS S S S + E A G K R KK
Sbjct: 764 EFKI----------SDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKK 813
Query: 331 RIDDGDGYETD 341
+ + G+ E +
Sbjct: 814 QKESGEEVEIE 824
Score = 33.5 bits (75), Expect = 2.1
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 24/162 (14%)
Query: 6 GTEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKR 65
G++EE + + + + + +E E + P P +PK+ K KK K K K
Sbjct: 636 GSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAP-KIPKEPKEKKAKTATPKPKS 694
Query: 66 KKKEGSNDELSENE--EDLEEKSESEGSDYS-----------------PNKKKKKKLKDK 106
KK + SE + K ++EGS+ S P +K++ +
Sbjct: 695 SKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQV 754
Query: 107 KEKKAKR----KKKDEDEDDNDDGCLKEPKSSGQLMAEWGLD 144
K K+ K DE+ DD D P ++ Q + +D
Sbjct: 755 KRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVD 796
Score = 32.0 bits (71), Expect = 6.1
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 9 EELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKK 68
E+ P+ ++ +N ++E+ G DDF P + ++ + + + K+KKK
Sbjct: 591 EQQPQQKKKKKKNNHIVAEDPSKGFGK-DDF----PGGVDNQELNRNSLDGSQEEKKKKK 645
Query: 69 EGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKA-----KRKKKDEDEDDN 123
+ + ++ +EK E + K K+ K+KK K A KK + D+
Sbjct: 646 RSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDS 705
Query: 124 DDGCLKEPKSSGQ 136
+ LK+ + G+
Sbjct: 706 EASALKKKVNKGK 718
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 495 bits (1275), Expect = e-139
Identities = 301/721 (41%), Positives = 412/721 (57%), Gaps = 88/721 (12%)
Query: 510 EFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRK 569
EFFVK+ SY HC W QLE + + + K M + F + ED
Sbjct: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFH----ED------- 436
Query: 570 NKDPLYAKMEERFYRYGIKPEWMMIHRILN--HSFDKKGD---VHYLIKWKDLPYDQCTW 624
EE F P+++ + RIL+ HS DK ++YL+KW LPY+ TW
Sbjct: 437 ---------EEPF-----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
Query: 625 EI-DDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPT 683
E+ +D+D K+ H EL R+ + KKL + K
Sbjct: 483 ELKEDVDEGKIREFKRIQSRHPELK-----RVNRPQASAWKKLELSHEYK---------- 527
Query: 684 VKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLY 743
L YQLEG+NWL F+W + ILADEMGLGKT+Q+I FL +Y
Sbjct: 528 ------------NRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY 575
Query: 744 KEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIR 803
G GP+LV APLSTI NWEREF W + + Y G SR +I++ E +D+ R
Sbjct: 576 NVG-IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGR 633
Query: 804 SGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863
+ KF L+T++E+I D L IEW C+++DEAHRLKN K L
Sbjct: 634 LIPGAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSL 685
Query: 864 NSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 923
+++K+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +
Sbjct: 686 KHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI 745
Query: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG--NQVS 981
L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L SKG G N +
Sbjct: 746 LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPN 804
Query: 982 LLNIMMDLKKCCNHPYLFPVAAVE--------APVLPNGSYDGSSLVKSSGKLMLLQKML 1033
LLN MM+L+KCCNHPYL A + ++P+ + ++V+S+GKL+L+ K+L
Sbjct: 805 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH-DFHLQAMVRSAGKLVLIDKLL 863
Query: 1034 KKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQ 1093
KL+ GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 864 PKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDR 923
Query: 1094 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRAS 1153
F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S
Sbjct: 924 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNS 983
Query: 1154 VEERITQVAKRKMMLTHLVVRPGLGSKSGSMT------KQELDDILKFGT-EELFKDDVE 1206
E + A K+ L V++ + + G++T K+E++D+L+ G + ++D E
Sbjct: 984 YEREMFDKASLKLGLDKAVLQ-SMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDE 1042
Query: 1207 G 1207
G
Sbjct: 1043 G 1043
Score = 32.7 bits (73), Expect = 3.6
Identities = 21/117 (17%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 53 PKKLKENKCKGKRKKKEGSNDELSEN-----EEDLEEKSESEGSDYSPNKKKKKKLKDKK 107
P+ L E++ R ++EG ++ +E+ +KS++ G+ + K K +
Sbjct: 202 PRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVV 261
Query: 108 EKKAKRKKKDEDED----------DNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEED 154
KK KR ++ D ++++ +++ +S+ Q+ + +D+D ++++
Sbjct: 262 GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDE 318
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 494 bits (1272), Expect = e-139
Identities = 298/760 (39%), Positives = 419/760 (55%), Gaps = 99/760 (13%)
Query: 473 LHWRWTEPPAP-------FMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSW 525
L W+ EPP + +V P PP F+VK+ SY HC W
Sbjct: 279 LAWQAEEPPEDDANIIEKILASKTVQEVHPGEPP------FDLELFYVKYRNFSYLHCKW 332
Query: 526 VKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRY 585
+LE + + + +N K+ ++ + +E +
Sbjct: 333 ATMEELEKDPRIAQKIKRFRN--------------------KQAQMKHIFTEPDEDLFN- 371
Query: 586 GIKPEWMMIHRILNHSFDKKGDV-----HYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQA 640
P+++ + RIL + K + HYL+KW LPY++ TWE++
Sbjct: 372 ---PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELE------------- 415
Query: 641 YWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTL 700
ED K +K+ + L+ + K + P D K +K Y +S L
Sbjct: 416 ----------EDVDPAK--VKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSN--QL 461
Query: 701 HPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLST 760
YQLEG+NWL F+W + ILADEMGLGKT+Q+I FL ++ G GP+L+ APLST
Sbjct: 462 REYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-IHGPFLIIAPLST 520
Query: 761 IINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFH 820
I NWEREF W + + Y G + SR +I++ E + D VF KFH
Sbjct: 521 ITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF--------KFH 571
Query: 821 VLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQ 880
V++T++E+I D L I W+C+++DEAHRLKN K L +++K+LLTGTPLQ
Sbjct: 572 VVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQ 631
Query: 881 NNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNM 940
N++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L P MLRRLK DV KN+
Sbjct: 632 NSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNL 691
Query: 941 PAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG--NQVSLLNIMMDLKKCCNHPYL 998
K E I+ VEL+ +QKKYY+ IL +NF L +KG N +L+N MM+L+KCCNHPYL
Sbjct: 692 APKQETIIEVELTNIQKKYYRAILEKNFSFL-TKGANQHNMPNLINTMMELRKCCNHPYL 750
Query: 999 FPVAA---------VEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQM 1049
A +P P+ + ++++++GKL+L+ K+L KL GH+VLIFSQM
Sbjct: 751 INGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQM 808
Query: 1050 TKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL 1109
+ LD+LED+L Y YERIDG + G LRQ AIDRF P + +F FLL TRAGGLGINL
Sbjct: 809 VRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINL 868
Query: 1110 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLT 1169
ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S E + A K+ L
Sbjct: 869 TAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLD 928
Query: 1170 HLVVRPGLGSKSGS-----MTKQELDDILKFGTEELFKDD 1204
V++ + K G+ ++K E++D+L+ G D+
Sbjct: 929 KAVLQ-DINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDE 967
Score = 42.0 bits (97), Expect = 0.006
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 8 EEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKK 67
EEE LF +M + + M + GG EP K K +E K K KR+
Sbjct: 65 EEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREP 124
Query: 68 KEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 117
KE ++ + +E E + D + +K ++ KE K KR D
Sbjct: 125 KEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTD 174
Score = 37.4 bits (85), Expect = 0.14
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 41 PVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEED--LEEKSESEGSDYSPNKK 98
P EP K K+PKK KE+K + K+K+G+ E E K + +D + K
Sbjct: 124 PKEPKEPRKAKEPKKAKEHK---EPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
Query: 99 KKKKLKDKK----EKKAKRKKKDE 118
+K K++ EKK K K+K E
Sbjct: 181 SRKASKEQGPTPVEKKKKGKRKSE 204
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 435 bits (1118), Expect = e-121
Identities = 228/544 (41%), Positives = 343/544 (63%), Gaps = 39/544 (7%)
Query: 684 VKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLY 743
++F+ P Y+ GG L YQ+ GLNWL + G + ILADEMGLGKT+QTI L L
Sbjct: 169 IRFEVSPSYVK--GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLK 226
Query: 744 KEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIR 803
+ GP++V P ST+ NW EF+ W P V+ + GDK++R+ +E
Sbjct: 227 HYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEM-------- 278
Query: 804 SGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863
+ ++ V +TSYE++ ++++ W LV+DEAHR+KN +SK ++
Sbjct: 279 -----------MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIV 327
Query: 864 NSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKL 920
+K +LLLTGTPLQNNL EL+ LLNFL P+ FN+ + F F + + +++L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387
Query: 921 HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV 980
H +L P +LRR+K DV K++P K E+ + + LS+MQ+++Y IL ++ + LNS G +++
Sbjct: 388 HAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKM 447
Query: 981 SLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEG 1040
LLNI+M L+KCCNHPYLF A P + +V +SGK+++L K+L KL+++G
Sbjct: 448 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----EHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 1041 HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLST 1100
RVLIFSQMT++LD+LED+ + GY+Y R+DG R+EAI+ FNAP + +F F+LST
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLST 562
Query: 1101 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1160
RAGGLGINLA+AD VI+YDSDWNP D+QA RAHRIGQ K V ++R +T +VEERI +
Sbjct: 563 RAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 622
Query: 1161 VAKRKMMLTHLVVRPG--LGSKSGSMTKQELDDILKFGT--------EELFKDDVEGMMS 1210
A+ K+ L +V++ G + +S + K+E+ +++ G EL +D+ ++
Sbjct: 623 RAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILE 682
Query: 1211 QGQR 1214
+G++
Sbjct: 683 RGEK 686
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 426 bits (1095), Expect = e-118
Identities = 228/556 (41%), Positives = 343/556 (61%), Gaps = 51/556 (9%)
Query: 684 VKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLY 743
++F+ P Y+ GG L YQ+ GLNWL + G + ILADEMGLGKT+QTI L L
Sbjct: 169 IRFEVSPSYVK--GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLK 226
Query: 744 KEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIR 803
+ GP++V P ST+ NW EF+ W P V+ + GDK++R+ +E
Sbjct: 227 HYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEM-------- 278
Query: 804 SGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863
+ ++ V +TSYE++ ++++ W LV+DEAHR+KN +SK ++
Sbjct: 279 -----------MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIV 327
Query: 864 NSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKL 920
+K +LLLTGTPLQNNL EL+ LLNFL P+ FN+ + F F + + +++L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387
Query: 921 HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV 980
H +L P +LRR+K DV K++P K E+ + + LS+MQ+++Y IL ++ + LNS G +++
Sbjct: 388 HAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKM 447
Query: 981 SLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEG 1040
LLNI+M L+KCCNHPYLF A P + +V +SGK+++L K+L KL+++G
Sbjct: 448 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----EHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 1041 HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ------------EAIDRFNA 1088
RVLIFSQMT++LD+LED+ + GY+Y R+DG R+ EAI+ FNA
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 562
Query: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148
P + +F F+LSTRAGGLGINLA+AD VI+YDSDWNP D+QA RAHRIGQ K V ++R
Sbjct: 563 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 622
Query: 1149 VTRASVEERITQVAKRKMMLTHLVVRPG--LGSKSGSMTKQELDDILKFGT--------E 1198
+T +VEERI + A+ K+ L +V++ G + +S + K+E+ +++ G
Sbjct: 623 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKES 682
Query: 1199 ELFKDDVEGMMSQGQR 1214
EL +D+ ++ +G++
Sbjct: 683 ELTDEDITTILERGEK 698
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 423 bits (1087), Expect = e-118
Identities = 231/573 (40%), Positives = 348/573 (60%), Gaps = 39/573 (6%)
Query: 668 DDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEM 727
+D++ + + +F+ P Y+ G L YQ+ GLNWL + G + ILADEM
Sbjct: 150 EDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENGINGILADEM 207
Query: 728 GLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESR 787
GLGKT+QTI L + + GP++V P ST+ NW EF+ W P V GDKE R
Sbjct: 208 GLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQR 267
Query: 788 SVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVD 847
+ +F + + G+ + V +TSYE++ ++++ W LV+D
Sbjct: 268 A-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKKFNWRYLVID 308
Query: 848 EAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE 907
EAHR+KN +SK ++ +K +LLLTGTPLQNNL EL+ LLNFL P+ FN+ + F
Sbjct: 309 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSW 368
Query: 908 FAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFIL 964
F + + +++LH +L P +LRR+KADV K++P K E+ + V LS+MQ+++Y IL
Sbjct: 369 FDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 428
Query: 965 TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSG 1024
++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + LV +SG
Sbjct: 429 MKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----MHLVTNSG 483
Query: 1025 KLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1084
K+++L K+L KL+++G RVLIFSQMT++LD+LED+ + Y+Y R+DG RQ++I+
Sbjct: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 543
Query: 1085 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1144
+N P + +F F+LSTRAGGLGINLATAD VI+YDSDWNP D+QA RAHRIGQ K V
Sbjct: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
Query: 1145 IYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKSGSMTKQELDDILKFGTEELF- 1201
++RF+T +VEERI + A+ K+ L +V++ G + + K E+ +++ G +F
Sbjct: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFA 663
Query: 1202 -------KDDVEGMMSQGQRPVTPIPDVQSSKG 1227
+D++G++ +G + + + S G
Sbjct: 664 SKESEITDEDIDGILERGAKKTAEMNEKLSKMG 696
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 410 bits (1054), Expect = e-114
Identities = 239/568 (42%), Positives = 342/568 (60%), Gaps = 47/568 (8%)
Query: 687 DKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEG 746
D + W + TG L YQLEG+NWL + IL DEMGLGKT QTI L
Sbjct: 35 DLRQWGL--TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 92
Query: 747 HSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGK 806
+ +GP+L+ PLS + NW+ E + +AP VTY GDKE R+ ++++
Sbjct: 93 NDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD------------- 139
Query: 807 KVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSY 866
+K+E +FHVLLT+YE+ D + L S W+ LVVDEAHRLKN S + L+ +
Sbjct: 140 ----LKQES--RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEF 193
Query: 867 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE--GFLEEFADISKEDQ-IKKLHDL 923
+ + LLLTGTP+QN+L+EL+ LL+F+ P+ F+ E F++ + DI KE + +LH L
Sbjct: 194 SVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKL 253
Query: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 983
L P +LRR+KA+V +P KTE+++ +S +QKKYYK IL ++ +A ++ +V L
Sbjct: 254 LQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETA-KKVKLQ 312
Query: 984 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 1043
NI+ L+KC +HPYLF V P G L ++SGKL LL K+L L GHRV
Sbjct: 313 NILSQLRKCVDHPYLFD------GVEPEPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRV 366
Query: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQ-FCFLLSTRA 1102
L+FSQMT+MLD+L+D+++Y GY YER+DG + G R AI F G Q F FLLSTRA
Sbjct: 367 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQPIFVFLLSTRA 423
Query: 1103 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVA 1162
GG+G+NL ADTVI DSD+NP ND+QA +RAHRIGQNK V + R + R +VEE + + A
Sbjct: 424 GGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKA 483
Query: 1163 KRKMMLTHLVVRPG---LGS-KSGSMTKQELDDILKFGTEELFKD--------DVEGMMS 1210
K+ LT++++ G LG+ K + +L +ILKFG ++L D+E ++
Sbjct: 484 ASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILG 543
Query: 1211 QGQRPVTPIPDVQSSKGGNLAASAKKKH 1238
+ + + +++GG+ K H
Sbjct: 544 ETKDGQWVSDALPAAEGGSRDQEEGKNH 571
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 394 bits (1012), Expect = e-109
Identities = 267/782 (34%), Positives = 401/782 (51%), Gaps = 110/782 (14%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP-GDNKDVEDSSVIHY 1257
+ +S + SA H + PP G N D+E+ +
Sbjct: 1257 D-----------------------ESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEE 1293
Query: 1258 ----DDAAISKLLDRNQDATD---DTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIK 1310
DD +++++ R+++ D +L E + K ++ E +E+ IIK
Sbjct: 1294 DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWIIK 1349
Query: 1311 QEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ----------- 1359
+ V+ R E+++E + G+G R RK+V+Y+D+ E Q
Sbjct: 1350 DDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLE 1398
Query: 1360 EWQDELSDNQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLL 1412
E ++E+ +S + GS R + ++Q +R + +++ P PP L
Sbjct: 1399 EIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNL 1458
Query: 1413 AR 1414
+
Sbjct: 1459 TK 1460
Score = 32.3 bits (72), Expect = 4.7
Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 1553 ASPAHLLPAPLGL-PDKMEAQLGYMDEKDPGAQKPRQPL-------------------EV 1592
AS AH P P G+ PD E L DE P + Q + E
Sbjct: 1269 ASFAHTAPPPAGVNPDLEEPPLKEEDEV-PDDETVNQMIARHEEEFDLFMRMDLDRRREE 1327
Query: 1593 QALPAALDRVESEDKHESPASKERAREER---PEETEK----APPSPEQLPREEVLPEKE 1645
P R+ ED+ S K+ A ER EE EK +++ + L EK+
Sbjct: 1328 ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1387
Query: 1646 --KILDKLELSLIHS---RGDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGK 1700
K +++ L I + SS R D+ A P + ++ DK DDE KK+ K+G+
Sbjct: 1388 WLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDK--DDESKKQKKRGR 1445
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 394 bits (1012), Expect = e-109
Identities = 267/782 (34%), Positives = 401/782 (51%), Gaps = 110/782 (14%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP-GDNKDVEDSSVIHY 1257
+ +S + SA H + PP G N D+E+ +
Sbjct: 1257 D-----------------------ESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEE 1293
Query: 1258 ----DDAAISKLLDRNQDATD---DTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIK 1310
DD +++++ R+++ D +L E + K ++ E +E+ IIK
Sbjct: 1294 DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWIIK 1349
Query: 1311 QEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ----------- 1359
+ V+ R E+++E + G+G R RK+V+Y+D+ E Q
Sbjct: 1350 DDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLE 1398
Query: 1360 EWQDELSDNQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLL 1412
E ++E+ +S + GS R + ++Q +R + +++ P PP L
Sbjct: 1399 EIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNL 1458
Query: 1413 AR 1414
+
Sbjct: 1459 TK 1460
Score = 32.3 bits (72), Expect = 4.7
Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 1553 ASPAHLLPAPLGL-PDKMEAQLGYMDEKDPGAQKPRQPL-------------------EV 1592
AS AH P P G+ PD E L DE P + Q + E
Sbjct: 1269 ASFAHTAPPPAGVNPDLEEPPLKEEDEV-PDDETVNQMIARHEEEFDLFMRMDLDRRREE 1327
Query: 1593 QALPAALDRVESEDKHESPASKERAREER---PEETEK----APPSPEQLPREEVLPEKE 1645
P R+ ED+ S K+ A ER EE EK +++ + L EK+
Sbjct: 1328 ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1387
Query: 1646 --KILDKLELSLIHS---RGDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGK 1700
K +++ L I + SS R D+ A P + ++ DK DDE KK+ K+G+
Sbjct: 1388 WLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDK--DDESKKQKKRGR 1445
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 392 bits (1007), Expect = e-108
Identities = 268/773 (34%), Positives = 399/773 (51%), Gaps = 111/773 (14%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP-GDNKDVEDSSVIHY 1257
+ +S + SA H + PP G N D+E+ +
Sbjct: 1257 D-----------------------ESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEE 1293
Query: 1258 ----DDAAISKLLDRNQDATD---DTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIK 1310
DD +++++ R+++ D +L E + K ++ E +E+ IIK
Sbjct: 1294 DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWIIK 1349
Query: 1311 QEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELS---- 1366
+ V+ R E+++E + G+G R RK+V+Y+D+ E Q W +++
Sbjct: 1350 DDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQ-WLKKITGKDI 1397
Query: 1367 -DNQSEYSIG-------------SEDEDEDFEERPEGQSGRRQSRRQLKSDRD 1405
D S + G S+ +E E E + +++S R+ K D D
Sbjct: 1398 HDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKSSRKRKRDSD 1450
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 387 bits (993), Expect = e-107
Identities = 256/705 (36%), Positives = 373/705 (52%), Gaps = 72/705 (10%)
Query: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
GTL YQL+GL W+ + + ILADEMGLGKT+QTI + L + GPYL+ P
Sbjct: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
Query: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
LST+ NW EF+ WAP ++Y G R + +RSGK
Sbjct: 782 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ--------LRSGK----------- 822
Query: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTG 876
F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +VLN+ Y ++LLTG
Sbjct: 823 -FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
Query: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 923
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 882 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
Query: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFILTRNFEALNSKGGGN 978
L P +LRRLK +V +P K E +++ ++S +QK Y K IL + + KG G
Sbjct: 942 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
Query: 979 QVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKK 1035
+L+N +M L+K CNHPY+F + E NG +G+ L ++SGK LL ++L K
Sbjct: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
Query: 1036 LRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFC 1095
LR HRVL+F QMT ++ ++ED+ + + Y R+DG R + +FN PG+Q F
Sbjct: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
Query: 1096 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155
FLLSTRAGGLG+NL ADTV+I+DSDWNPH D+QA RAHRIGQ +V + R T SVE
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 1156 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTEELFKDDV------EG 1207
E+I AK K+ + V++ G+ + S ++ L IL+ E +D+V
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQ 1241
Query: 1208 MMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLD 1267
M+++ + + + A + K+K P ++ E S I DDA + +L
Sbjct: 1242 MIARREEEFDLFMRMDMDRRREDARNPKRK-----PRLMEEDELPSWIIKDDAEVERLTC 1296
Query: 1268 RNQDAT---DDTELQNMNEYLSSFKVAQYVVREEDG-VEEVEREI----IKQEENVDPD- 1318
++ + + +Y + Q++ EDG +EE+E E+ K+ NVD D
Sbjct: 1297 EEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDP 1356
Query: 1319 ---YWEKLLRHHYEQQQEDLARNLGKGKR-----IRKQVNYNDAS 1355
EK + E L+ N K + I +NY D+S
Sbjct: 1357 AKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS 1401
Score = 37.0 bits (84), Expect = 0.19
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 16 AEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKE---NKCKGKRKKKEGS- 71
A+E E+EDE +EEE+ E ++ E S+ K K K + +K KGK++ G
Sbjct: 1489 AKEEESEDESNEEEE---EEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKA 1545
Query: 72 ----NDELSENEEDLEEKSESEGSD 92
+D S+ E+D E+SE G+D
Sbjct: 1546 KPVVSDFDSDEEQDEREQSEGSGTD 1570
Score = 35.8 bits (81), Expect = 0.42
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 314 ECSAALGKKSKRRRKKKRIDDGDGYET----DHQDYCEVCQ-----------QGGEIILC 358
+ AA KK +RRRKKK ++ +G E+ D + E Q + G+++
Sbjct: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
Query: 359 DTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
P+A LD LE P G P + E + +++D+EEE E EE
Sbjct: 609 PEAPKASQ---LDAWLEMNP-GYEVAPRSDSEESDSDYEEEDEEEESSRQETEE 658
Score = 34.7 bits (78), Expect = 0.94
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 64 KRKKKEGSNDELSENEEDL-EEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKK------ 116
K K+E S DE +E EE+ EE+SESE K KK DK K K KK+
Sbjct: 1487 KIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK-DDKGRDKGKGKKRPNRGKA 1545
Query: 117 -----DEDEDDNDD 125
D D D+ D
Sbjct: 1546 KPVVSDFDSDEEQD 1559
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 386 bits (991), Expect = e-106
Identities = 245/659 (37%), Positives = 357/659 (54%), Gaps = 63/659 (9%)
Query: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
GTL YQL+GL W+ + + ILADEMGLGKT+QTI + L + GPYL+ P
Sbjct: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
Query: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
LST+ NW EF+ WAP ++Y G R + +RSGK
Sbjct: 782 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ--------LRSGK----------- 822
Query: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTG 876
F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +VLN+ Y ++LLTG
Sbjct: 823 -FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
Query: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 923
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 882 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
Query: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFILTRNFEALNSKGGGN 978
L P +LRRLK +V +P K E +++ ++S +QK Y K IL + + KG G
Sbjct: 942 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
Query: 979 QVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKK 1035
+L+N +M L+K CNHPY+F + E NG +G+ L ++SGK LL ++L K
Sbjct: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
Query: 1036 LRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFC 1095
LR HRVL+F QMT ++ ++ED+ + + Y R+DG R + +FN PG+Q F
Sbjct: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
Query: 1096 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155
FLLSTRAGGLG+NL ADTV+I+DSDWNPH D+QA RAHRIGQ +V + R T SVE
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 1156 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTEELFKDDV------EG 1207
E+I AK K+ + V++ G+ + S ++ L IL+ E +D+V
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQ 1241
Query: 1208 MMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLD 1267
M+++ + + + A + K+K P ++ E S I DDA + +L
Sbjct: 1242 MIARREEEFDLFMRMDMDRRREDARNPKRK-----PRLMEEDELPSWIIKDDAEVERLTC 1296
Query: 1268 RNQDAT---DDTELQNMNEYLSSFKVAQYVVREEDG-VEEVEREI----IKQEENVDPD 1318
++ + + +Y + Q++ EDG +EE+E E+ K+ NVD D
Sbjct: 1297 EEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKD 1355
Score = 37.0 bits (84), Expect = 0.19
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 16 AEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKE---NKCKGKRKKKEGS- 71
A+E E+EDE +EEE+ E ++ E S+ K K K + +K KGK++ G
Sbjct: 1507 AKEEESEDESNEEEE---EEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKA 1563
Query: 72 ----NDELSENEEDLEEKSESEGSD 92
+D S+ E+D E+SE G+D
Sbjct: 1564 KPVVSDFDSDEEQDEREQSEGSGTD 1588
Score = 35.8 bits (81), Expect = 0.42
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 314 ECSAALGKKSKRRRKKKRIDDGDGYET----DHQDYCEVCQ-----------QGGEIILC 358
+ AA KK +RRRKKK ++ +G E+ D + E Q + G+++
Sbjct: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
Query: 359 DTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
P+A LD LE P G P + E + +++D+EEE E EE
Sbjct: 609 PEAPKASQ---LDAWLEMNP-GYEVAPRSDSEESDSDYEEEDEEEESSRQETEE 658
Score = 34.7 bits (78), Expect = 0.94
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 64 KRKKKEGSNDELSENEEDL-EEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKK------ 116
K K+E S DE +E EE+ EE+SESE K KK DK K K KK+
Sbjct: 1505 KIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK-DDKGRDKGKGKKRPNRGKA 1563
Query: 117 -----DEDEDDNDD 125
D D D+ D
Sbjct: 1564 KPVVSDFDSDEEQD 1577
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 383 bits (983), Expect = e-105
Identities = 292/989 (29%), Positives = 464/989 (46%), Gaps = 172/989 (17%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYD 1258
+ +D+V D++ V H +
Sbjct: 1257 DEEEDEVP--------------------------------------DDETVNQMIARHEE 1278
Query: 1259 DAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPD 1318
+ + +D ++ + + + ++ ++++++ EVER ++EE
Sbjct: 1279 EFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDD---AEVERLTCEEEE----- 1330
Query: 1319 YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ-----------EWQDELSD 1367
EK+ G+G R RK+V+Y+D+ E Q E ++E+
Sbjct: 1331 --EKM---------------FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQ 1373
Query: 1368 NQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLLAR-----V 1415
+S + GS R + ++Q +R + +++ P PP L + V
Sbjct: 1374 KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIV 1433
Query: 1416 GGNIEVLGFNARQ-RKAFLNAIMRWGMP--------PQDAFNSHWLVRDLRGKSEKEFRA 1466
I+ + RQ + F+ R +P P D +R+ + +S +
Sbjct: 1434 DAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEK 1493
Query: 1467 YVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYST 1526
V L ++ +G+ + D + + V + VR+K+++ + G+ S
Sbjct: 1494 DVMLLCQNAQTFNLEGSLIYEDSIVLQ-----------SVFTSVRQKIEKEDDSEGEES- 1541
Query: 1527 PDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPLGLPDKMEAQLGYMDEKDPGAQKP 1586
E EG++ G S + + + L K +AQ D G ++P
Sbjct: 1542 ----EEEEEGEEEGS-----------ESESRSVKVKIKLGRKEKAQ----DRLKGGRRRP 1582
Query: 1587 RQPLEVQALPAALDRVESEDKHESPASKE 1615
+ + + + D E +++ S + E
Sbjct: 1583 SRGSRAKPVVSDDDSEEEQEEDRSGSGSE 1611
Score = 32.0 bits (71), Expect = 6.1
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 1576 MDEKDPGAQKPRQP---LEVQALPAALDRVESEDKHESPASKERAREERPEETEKAPPSP 1632
+D + A+ P++ +E LP+ + + ++E + + +E R K
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1633 EQLPREEVLPE-KEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIETQQNGDKEEDDE 1691
+ L ++ L +E L+++E + + SS R D+ A P + ++ DK DDE
Sbjct: 1348 DSLTEKQWLKAIEEGTLEEIEEEVRQKK--SSRKRKRDSDAGSSTPTTSTRSRDK--DDE 1403
Query: 1692 GKKEDKKGK 1700
KK+ K+G+
Sbjct: 1404 SKKQKKRGR 1412
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 382 bits (980), Expect = e-105
Identities = 292/992 (29%), Positives = 464/992 (46%), Gaps = 175/992 (17%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYD 1258
+ +D+V D++ V H +
Sbjct: 1257 DEEEDEVP--------------------------------------DDETVNQMIARHEE 1278
Query: 1259 DAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPD 1318
+ + +D ++ + + + ++ ++++++ EVER ++EE
Sbjct: 1279 EFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDD---AEVERLTCEEEE----- 1330
Query: 1319 YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ--------------EWQDE 1364
EK+ G+G R RK+V+Y+D+ E Q E ++E
Sbjct: 1331 --EKM---------------FGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEEIEEE 1373
Query: 1365 LSDNQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLLAR--- 1414
+ +S + GS R + ++Q +R + +++ P PP L +
Sbjct: 1374 VRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK 1433
Query: 1415 --VGGNIEVLGFNARQ-RKAFLNAIMRWGMP--------PQDAFNSHWLVRDLRGKSEKE 1463
V I+ + RQ + F+ R +P P D +R+ + +S +
Sbjct: 1434 KIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLND 1493
Query: 1464 FRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGK 1523
V L ++ +G+ + D + + V + VR+K+++ + G+
Sbjct: 1494 LEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ-----------SVFTSVRQKIEKEDDSEGE 1542
Query: 1524 YSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPLGLPDKMEAQLGYMDEKDPGA 1583
S E EG++ G S + + + L K +AQ D G
Sbjct: 1543 ES-----EEEEEGEEEGS-----------ESESRSVKVKIKLGRKEKAQ----DRLKGGR 1582
Query: 1584 QKPRQPLEVQALPAALDRVESEDKHESPASKE 1615
++P + + + + D E +++ S + E
Sbjct: 1583 RRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSE 1614
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 381 bits (979), Expect = e-105
Identities = 255/774 (32%), Positives = 387/774 (50%), Gaps = 127/774 (16%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYD 1258
+ +D+V D++ V H +
Sbjct: 1257 DEEEDEVP--------------------------------------DDETVNQMIARHEE 1278
Query: 1259 DAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPD 1318
+ + +D ++ + + + ++ ++++++ EVER ++EE
Sbjct: 1279 EFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDD---AEVERLTCEEEE----- 1330
Query: 1319 YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ-----------EWQDELSD 1367
EK+ G+G R RK+V+Y+D+ E Q E ++E+
Sbjct: 1331 --EKM---------------FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQ 1373
Query: 1368 NQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLLAR 1414
+S + GS R + ++Q +R + +++ P PP L +
Sbjct: 1374 KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTK 1427
Score = 32.0 bits (71), Expect = 6.1
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 1576 MDEKDPGAQKPRQP---LEVQALPAALDRVESEDKHESPASKERAREERPEETEKAPPSP 1632
+D + A+ P++ +E LP+ + + ++E + + +E R K
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1633 EQLPREEVLPE-KEKILDKLELSLIHSRGDSSELRPDDTKAEEKEPIETQQNGDKEEDDE 1691
+ L ++ L +E L+++E + + SS R D+ A P + ++ DK DDE
Sbjct: 1348 DSLTEKQWLKAIEEGTLEEIEEEVRQKK--SSRKRKRDSDAGSSTPTTSTRSRDK--DDE 1403
Query: 1692 GKKEDKKGK 1700
KK+ K+G+
Sbjct: 1404 SKKQKKRGR 1412
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 380 bits (977), Expect = e-105
Identities = 243/674 (36%), Positives = 360/674 (53%), Gaps = 74/674 (10%)
Query: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
Query: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
Query: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
Query: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
Query: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
Query: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
Query: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
Query: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
Query: 1199 ELFKDD------VEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDS 1252
+ +D+ V M+++ + + + A + K+K P ++ E
Sbjct: 1257 DEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRK-----PRLMEEDELP 1311
Query: 1253 SVIHYDDAAISKLL------------DRNQDATDDTELQNMNEYLSSFKVAQYVVREEDG 1300
S I DDA + +L R++ D ++ ++L + K EE
Sbjct: 1312 SWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAI-----EEGT 1366
Query: 1301 VEEVEREIIKQEEN 1314
+EE+E E+ +++ +
Sbjct: 1367 LEEIEEEVRQKKSS 1380
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 289 bits (739), Expect = 2e-77
Identities = 204/595 (34%), Positives = 296/595 (49%), Gaps = 99/595 (16%)
Query: 681 DPTVKFDKQPWYIDS----TGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
DP K + QP TGG + YQ+EG+ WLR W G + ILADEMGLGKTVQ I
Sbjct: 200 DPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 259
Query: 737 VFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS 796
+ + + G GP+LV PLST+ NW EF+ + PD + Y G +E R + N
Sbjct: 260 ATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRN--- 315
Query: 797 FEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQ 856
+++ K +QI V++TS+E+ D+ L W L+VDE HR+KN +
Sbjct: 316 -----------IYKRKGTLQIH-PVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMK 363
Query: 857 SKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK--- 913
+ R L + D KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 364 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITSLSE 422
Query: 914 --EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKF 962
ED I K LH +L P +LRRLK+DV +P K E++V LS+ Q+ +Y
Sbjct: 423 TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTA 482
Query: 963 ILTRNFEALNSKGGGNQVSLL---NIMMDLKKCCNHPYL--FP-------------VAAV 1004
I+ R + + L +K N+ + FP V
Sbjct: 483 IVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRE 542
Query: 1005 EAPVLPNGSYDGSSLVKSSGKLMLLQKML--------------------KKLRDEGHRVL 1044
A V N + +K +MLL+K ++L + L
Sbjct: 543 RAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFL 602
Query: 1045 IFSQM--------------TKMLDLLEDFLEY---EGYKYERIDGGITGGLRQEAIDRFN 1087
I +M ++M +L+ ++Y + + R+DG ++ R++ + FN
Sbjct: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
Query: 1088 APGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR 1147
+ F FL+STRAGGLGINL ADTVIIYDSDWNP +D+QA R HRIGQ K V++YR
Sbjct: 663 T-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYR 721
Query: 1148 FVTRASVEERITQVAKRKMMLTHLVV--------RPGLGSKSGSMTKQELDDILK 1194
VT +++++I + A K L L++ + GL + +EL ++LK
Sbjct: 722 LVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLK 776
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 281 bits (718), Expect = 6e-75
Identities = 179/525 (34%), Positives = 272/525 (51%), Gaps = 76/525 (14%)
Query: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
+L PYQ GLNWL G + ILADEMGLGKT+Q I FL LY+EG++ GP+L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
Query: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817
STI NW RE +W P V+ Y G +E R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 818 KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
++V++T+Y + D+++ ++ + DE H LKN S ++ L + + +LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984
P +LRR+K +V K +P K + I +S+ Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 985 IMMDLKKCCNHPYLF-------------------PVAAVEAPVL---------------- 1009
+MM L+K NHP L P P L
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1010 ------PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYE 1063
N L+ SGK +L +L +L+ +G RV++FSQ T MLD+LE L++
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123
++Y R+DG R ID FN F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168
P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 281 bits (718), Expect = 6e-75
Identities = 179/525 (34%), Positives = 272/525 (51%), Gaps = 76/525 (14%)
Query: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
+L PYQ GLNWL G + ILADEMGLGKT+Q I FL LY+EG++ GP+L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
Query: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817
STI NW RE +W P V+ Y G +E R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 818 KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
++V++T+Y + D+++ ++ + DE H LKN S ++ L + + +LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984
P +LRR+K +V K +P K + I +S+ Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 985 IMMDLKKCCNHPYLF-------------------PVAAVEAPVL---------------- 1009
+MM L+K NHP L P P L
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1010 ------PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYE 1063
N L+ SGK +L +L +L+ +G RV++FSQ T MLD+LE L++
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123
++Y R+DG R ID FN F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168
P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 278 bits (710), Expect = 5e-74
Identities = 179/525 (34%), Positives = 272/525 (51%), Gaps = 78/525 (14%)
Query: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
+L PYQ GLNWL G + ILADEMGLGKT+Q I FL LY+EG++ GP+L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
Query: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817
STI NW RE +W P V+ Y G +E R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 818 KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
++V++T+Y + D+++ ++ + DE H LKN S ++ L + + +LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984
P +LRR+K +V K +P K + I +S+ Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
Query: 985 IMMDLKKCCNHPYLF-------------------PVAAVEAPVL---------------- 1009
+MM L+K NHP L P P L
Sbjct: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
Query: 1010 ------PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYE 1063
N L+ SGK +L +L +L+ +G RV++FSQ T MLD+LE L++
Sbjct: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
Query: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123
++Y R+DG R ID FN F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
Query: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168
P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 261 bits (666), Expect = 6e-69
Identities = 180/548 (32%), Positives = 277/548 (50%), Gaps = 70/548 (12%)
Query: 661 KKGKKLRDDKQEKPPDTPIVDPTVKFD---KQPWYIDSTGGTLHPYQLEGLNWLRFSWAQ 717
+K KL DD +E + FD K P ++ L YQ G+ WL Q
Sbjct: 477 EKRLKLEDDSEESDAE---------FDEGFKVPGFLFKK---LFKYQQTGVRWLWELHCQ 524
Query: 718 GTDTILADEMGLGKTVQTIVFLYSL-YKEGHSKG---------PYLVSAPLSTIINWERE 767
IL DEMGLGKT+Q I FL L Y + ++G P ++ P + + W +E
Sbjct: 525 QAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKE 584
Query: 768 FEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYE 827
F W P F V E+ S + E D A G +L+TSY
Sbjct: 585 FHTWWPPFRVAIL---HETGSYTHKKEKLIRDVAHCHG---------------ILITSYS 626
Query: 828 LITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 887
I + Q + +W +++DE H+++N + ++ ++++L+G+P+QNNL EL+
Sbjct: 627 YIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELW 686
Query: 888 HLLNFLTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRL 932
L +F+ P + L F+E+F+ + Q+K L D + P++LRR+
Sbjct: 687 SLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRM 746
Query: 933 KADVFKNM--PAKTELIVRVELSQMQKKYYK-FILTRN-FEALNSKGGGNQVSLLNIMMD 988
K+DV ++ P K E ++ L+ Q K Y+ F+ ++ + LN ++ + + ++
Sbjct: 747 KSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIA 801
Query: 989 LKKCCNHPYLFPVAAVEAPVLPNGSY--DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIF 1046
L+K CNHP LF LP+ D K SGK+++++ +LK +G RVL+F
Sbjct: 802 LRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLF 861
Query: 1047 SQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1106
SQ +MLD+LE FL + Y Y ++DG T RQ I R+N F FLL+TR GGLG
Sbjct: 862 SQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLG 920
Query: 1107 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKM 1166
+NL A+ V+IYD DWNP D QA RA RIGQ K+V +YR +T ++EE+I K
Sbjct: 921 VNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQ 980
Query: 1167 MLTHLVVR 1174
LT+ V++
Sbjct: 981 FLTNRVLK 988
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 220 bits (560), Expect = 1e-56
Identities = 161/544 (29%), Positives = 262/544 (48%), Gaps = 63/544 (11%)
Query: 665 KLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWL-------RFSWAQ 717
+L+ DK EK P +VDP + L P+Q EG+ +L R +
Sbjct: 131 QLKLDK-EKLPVHVVVDPILS------------KVLRPHQREGVKFLWECVTSRRIPGSH 177
Query: 718 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL----VSAPLSTIINWEREFEMWAP 773
G I+ADEMGLGKT+Q I +++L ++ P + V +P S + NW E W
Sbjct: 178 GC--IMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWL- 234
Query: 774 DFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQ 833
G + I D + F ++ ++ +L+ SYE +
Sbjct: 235 --------GGRIQPLAIDGGSKDEIDQKLEG----FMNQRGARVSSPILIISYETFRLHV 282
Query: 834 AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL 893
+L ++ DE HRLKN++++ ++ L+S ++L++GTP+QN+L E F L++F+
Sbjct: 283 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 894 TPERFNNLEGFLEEF---------ADISK------EDQIKKLHDLLGPHMLRRLKADVFK 938
F + F A S+ E+++++L ++ ++RR + K
Sbjct: 343 NSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSK 402
Query: 939 NMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYL 998
+P K E +V L+ +Q + YK L + A G VS L+ + LKK CNHP L
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPAL 462
Query: 999 FPVAAVEAP--------VLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH-RVLIFSQM 1049
VE + P G + + SGK+++L +L R +V++ S
Sbjct: 463 IYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNY 522
Query: 1050 TKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL 1109
T+ LDL E Y Y R+DG ++ R + ++RFN+P + F F+LS++AGG G+NL
Sbjct: 523 TQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL 582
Query: 1110 ATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLT 1169
A+ ++++D DWNP ND QA +R R GQ K IYR ++ ++EE+I Q K L+
Sbjct: 583 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALS 642
Query: 1170 HLVV 1173
VV
Sbjct: 643 SCVV 646
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,404,052
Number of Sequences: 37866
Number of extensions: 4757801
Number of successful extensions: 45993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 696
Number of HSP's that attempted gapping in prelim test: 26057
Number of HSP's gapped (non-prelim): 14724
length of query: 1954
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1837
effective length of database: 13,817,196
effective search space: 25382189052
effective search space used: 25382189052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.