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Search of human proteins with 240255432
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|240255432 hypothetical protein LOC100130988 [Homo sapiens]
(438 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|240255432 hypothetical protein LOC100130988 [Homo sapiens] 916 0.0
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 36 0.060
gi|238859651 pleckstrin homology domain containing family A memb... 35 0.18
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 32 0.87
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 1.1
gi|110347437 latent transforming growth factor beta binding prot... 31 1.9
gi|110347412 latent transforming growth factor beta binding prot... 31 1.9
gi|110347431 latent transforming growth factor beta binding prot... 31 1.9
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 31 2.5
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 31 2.5
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens] 30 3.3
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 30 3.3
gi|14165278 hypothetical protein LOC84418 [Homo sapiens] 30 3.3
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 30 3.3
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 30 4.3
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 30 4.3
gi|118402590 myosin XV [Homo sapiens] 30 4.3
gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo ... 30 4.3
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 30 4.3
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 30 4.3
gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isofor... 30 4.3
gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isofor... 30 4.3
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 30 4.3
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 30 5.7
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 30 5.7
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 30 5.7
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 30 5.7
gi|53759129 proline rich 13 isoform 2 [Homo sapiens] 30 5.7
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 29 7.4
gi|241982780 programmed cell death 6 interacting protein isoform... 29 7.4
>gi|240255432 hypothetical protein LOC100130988 [Homo sapiens]
Length = 438
Score = 916 bits (2368), Expect = 0.0
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKC 60
MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKC
Sbjct: 1 MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKC 60
Query: 61 NPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLN 120
NPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLN
Sbjct: 61 NPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLN 120
Query: 121 PGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIR 180
PGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIR
Sbjct: 121 PGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIR 180
Query: 181 ARLGGWTSPLKVTPLQPHHEGRSLSHIFTFDEEATCTDEGEPLVQTNKKCNAKDSFYKSS 240
ARLGGWTSPLKVTPLQPHHEGRSLSHIFTFDEEATCTDEGEPLVQTNKKCNAKDSFYKSS
Sbjct: 181 ARLGGWTSPLKVTPLQPHHEGRSLSHIFTFDEEATCTDEGEPLVQTNKKCNAKDSFYKSS 240
Query: 241 TQKAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRFQT 300
TQKAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRFQT
Sbjct: 241 TQKAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRFQT 300
Query: 301 RSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQRYSKPLYINT 360
RSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQRYSKPLYINT
Sbjct: 301 RSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQRYSKPLYINT 360
Query: 361 SRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVT 420
SRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVT
Sbjct: 361 SRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVT 420
Query: 421 TVRPYNPFNKKDKETIDY 438
TVRPYNPFNKKDKETIDY
Sbjct: 421 TVRPYNPFNKKDKETIDY 438
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 36.2 bits (82), Expect = 0.060
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 4 EIQDTPGKISISKRSILSGTVENIDYPH------YCDLLRKMNMPFVKGLENRHNYGRFE 57
EIQD GK+ + + +G NI +C LRK N K + H++ + +
Sbjct: 335 EIQDDRGKMDV----VGTGQCHNIPCEEGDKLQLFCFRLRKKNQ-MSKLISEMHSFIQIK 389
Query: 58 KKCNPA-----FLKFH------PYPP---SVLPDYHLHDPYPPPYGPHYPLFPLRDDVTL 103
KK NP +K PYP + P+ HL P PP P F + + T+
Sbjct: 390 KKTNPRNNDPKSMKLPQEQRQLPYPSEASTTFPESHLRTPQMPPTTPSSSFFTKKSEDTI 449
Query: 104 GDSCSGFMSPG--GDADLNPGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIK-RQKILS 160
+ FM + PG T + PQ P + F TT+K R K
Sbjct: 450 -SKMNDFMRMQILKEGSHFPGPFMTSIGPAESHPHTPQMPPSTPSSSFLTTLKPRLKTEP 508
Query: 161 EEL 163
EE+
Sbjct: 509 EEV 511
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 34.7 bits (78), Expect = 0.18
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 38/126 (30%)
Query: 113 PGGDADL-NPGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWN- 170
PGGD DL +P +G P + S + +H +P P G + + R ++ ++E + R N
Sbjct: 544 PGGDKDLASPHLGLGSPRVSRASSPEGRH-LPSPQLGTKAPVARPRMSAQEQLERMRRNQ 602
Query: 171 -----------------------SREVPDISIRARLG------------GWTSPLKVTPL 195
+R PD+ R +G W+SP TP
Sbjct: 603 ECGRPFPRPTSPRLLTLGRTLSPARRQPDVEQRPVVGHSGAQKWLRSSGSWSSPRNTTPY 662
Query: 196 QPHHEG 201
P EG
Sbjct: 663 LPTSEG 668
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 32.3 bits (72), Expect = 0.87
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 61 NPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPL-------RDDVTLGDSCSGFM-- 111
N AF + PP P ++ P PP GP Y +FP D ++G GF
Sbjct: 2429 NQAFTR----PPPPYPG-NIRSPVAPPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFG 2483
Query: 112 SPGGDADLNPGIGRTI--PTLVDFSDVKPQHR------VPRP 145
PGG P R + P + S V PQ R +PRP
Sbjct: 2484 FPGGSHGTMPSQERFLVPPQQIQGSGVSPQLRRSVSVDMPRP 2525
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 66 KFHPY----PPSVLPDYHLHDPYPPPYGPHYPL-FPLRDDVTLGDSCSGFMSPGGDADLN 120
+F PY PP + P Y P+PPPYGP P +P D + +G G L
Sbjct: 242 QFPPYRGMMPPFMYPPYL---PFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLV 298
Query: 121 PGIGRTIPTLVDFSDVK 137
+GR P+++ ++K
Sbjct: 299 EPVGR--PSILKEDNLK 313
>gi|110347437 latent transforming growth factor beta binding protein 4
isoform c [Homo sapiens]
Length = 1557
Score = 31.2 bits (69), Expect = 1.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 70 YPPSVLPDYHLHDPYPPPYGP 90
YPP LP +DPYPPP GP
Sbjct: 1375 YPPPALP----YDPYPPPPGP 1391
>gi|110347412 latent transforming growth factor beta binding protein 4
isoform b [Homo sapiens]
Length = 1587
Score = 31.2 bits (69), Expect = 1.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 70 YPPSVLPDYHLHDPYPPPYGP 90
YPP LP +DPYPPP GP
Sbjct: 1405 YPPPALP----YDPYPPPPGP 1421
>gi|110347431 latent transforming growth factor beta binding protein 4
isoform a [Homo sapiens]
Length = 1624
Score = 31.2 bits (69), Expect = 1.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 70 YPPSVLPDYHLHDPYPPPYGP 90
YPP LP +DPYPPP GP
Sbjct: 1442 YPPPALP----YDPYPPPPGP 1458
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 30.8 bits (68), Expect = 2.5
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 69 PYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLNPGIGRTIP 128
P PP +LP P PPP PL P T +G M A ++ G+G
Sbjct: 501 PPPPPLLPGMGWGPPPPPP-----PLLP----CTCSPPVAGGMEEVIVAQVDHGLG---- 547
Query: 129 TLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQ-NRRWNSREVPD 176
S P HR P T + QK+ S ++ N W S PD
Sbjct: 548 -----SAWVPSHRRVNPPTLRMKKLNWQKLPSNVAREHNSMWASLSSPD 591
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 30.8 bits (68), Expect = 2.5
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 69 PYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLNPGIGRTIP 128
P PP +LP P PPP PL P T +G M A ++ G+G
Sbjct: 501 PPPPPLLPGMGWGPPPPPP-----PLLP----CTCSPPVAGGMEEVIVAQVDHGLG---- 547
Query: 129 TLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQ-NRRWNSREVPD 176
S P HR P T + QK+ S ++ N W S PD
Sbjct: 548 -----SAWVPSHRRVNPPTLRMKKLNWQKLPSNVAREHNSMWASLSSPD 591
>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
Length = 1111
Score = 30.4 bits (67), Expect = 3.3
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 62 PAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPL 94
P+ L+ P PP+ LP P PPP PHYP+
Sbjct: 163 PSRLEHPPPPPAHLPG----PPPPPPPPPHYPV 191
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 30.4 bits (67), Expect = 3.3
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 62 PAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPL 94
P+ L+ P PP+ LP P PPP PHYP+
Sbjct: 172 PSRLEHPPPPPAHLPG----PPPPPPPPPHYPV 200
>gi|14165278 hypothetical protein LOC84418 [Homo sapiens]
Length = 97
Score = 30.4 bits (67), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 67 FHPYPPSVLPDYHLHDPYPPPYGPHYPLFP 96
+ PYPP + + PYPPP G Y +P
Sbjct: 18 YPPYPPQPMGPGPMGGPYPPPQGYPYQGYP 47
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 61 NPAFLKF---HPYPPSVLPDYHLHDPYPPPYGPHYPLFP 96
NPAF HP P P PYPPPY P P P
Sbjct: 51 NPAFPPGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIP 89
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 4.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 13 SISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPP 72
S ++++ + ++E+ +Y +L R ++ V R NYG+ + PA +HP
Sbjct: 56 SSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCR-RKNYGQLD--IFPARDTYHPM-- 110
Query: 73 SVLPDYHLHDPYPPP 87
S P YH H Y PP
Sbjct: 111 SEYPTYHTHGRYVPP 125
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 30.0 bits (66), Expect = 4.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 13 SISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPP 72
S ++++ + ++E+ +Y +L R ++ V R NYG+ + PA +HP
Sbjct: 47 SSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCR-RKNYGQLD--IFPARDTYHPM-- 101
Query: 73 SVLPDYHLHDPYPPP 87
S P YH H Y PP
Sbjct: 102 SEYPTYHTHGRYVPP 116
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 30.0 bits (66), Expect = 4.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 69 PYPPSVLPDYHLHD-PYPPPYGPHY 92
PYPP LP + +D PY PYG HY
Sbjct: 352 PYPPYDLPYHTPYDVPYFDPYGVHY 376
>gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo
sapiens]
Length = 389
Score = 30.0 bits (66), Expect = 4.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 103 LGDSCSGFMSPGGDADLNPGIGRTIPT--LVDFSDVKPQHRVPRPDTG 148
L D +G +P G L PG + P+ ++ F +K +H++P P TG
Sbjct: 257 LHDPQTGTSAPPGSPALLPGSPASRPSNWIISFPALKLEHQLPSPQTG 304
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 30.0 bits (66), Expect = 4.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 223 LVQTNKKCNAKDSFYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKAADPISQ 274
LV+ K+CN + S K +EDVP D++ P + +K + ++Q
Sbjct: 129 LVEAEKECNLELSEKLKGVTKNWEDVPGDQVKPDQYTEALAQRDKRIEELNQ 180
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 30.0 bits (66), Expect = 4.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 223 LVQTNKKCNAKDSFYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKAADPISQ 274
LV+ K+CN + S K +EDVP D++ P + +K + ++Q
Sbjct: 129 LVEAEKECNLELSEKLKGVTKNWEDVPGDQVKPDQYTEALAQRDKRIEELNQ 180
>gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isoform
[Homo sapiens]
Length = 483
Score = 30.0 bits (66), Expect = 4.3
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 4 EIQDTPGKISISKRSILSGTVENIDYPH------YCDLLRKM-NMPFVKGLENRHNYGRF 56
EIQD G +++ + G NI +C LRK NM K + H++ +
Sbjct: 336 EIQDKTGSMAV----VGKGECHNIPCEKGDKLRLFCFRLRKRENMS--KLMSEMHSFIQI 389
Query: 57 EKKCN-----------PAFLKFHPYPP---SVLPDYHLHDPYPPPYGPHYPLFPLRDDVT 102
+K N P HP P + LP+ HL P PP P F +D+
Sbjct: 390 QKNTNQRSHDSRSMALPQEQSQHPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKKDETH 449
Query: 103 LGDSCS 108
G S
Sbjct: 450 PGAQSS 455
>gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isoform
[Homo sapiens]
Length = 492
Score = 30.0 bits (66), Expect = 4.3
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 4 EIQDTPGKISISKRSILSGTVENIDYPH------YCDLLRKM-NMPFVKGLENRHNYGRF 56
EIQD G +++ + G NI +C LRK NM K + H++ +
Sbjct: 345 EIQDKTGSMAV----VGKGECHNIPCEKGDKLRLFCFRLRKRENMS--KLMSEMHSFIQI 398
Query: 57 EKKCN-----------PAFLKFHPYPP---SVLPDYHLHDPYPPPYGPHYPLFPLRDDVT 102
+K N P HP P + LP+ HL P PP P F +D+
Sbjct: 399 QKNTNQRSHDSRSMALPQEQSQHPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKKDETH 458
Query: 103 LGDSCS 108
G S
Sbjct: 459 PGAQSS 464
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 30.0 bits (66), Expect = 4.3
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 31/305 (10%)
Query: 136 VKPQHRVPRPDTGFQTTIKRQKI---LSEELQQNRRWNSREVPDISIRARLGGWTSPLKV 192
++P+ + P Q++ +Q+ L + L++ +E P + + + T P
Sbjct: 220 LEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHE 279
Query: 193 TPLQPHHEGRSLSHIFTF-----DEEATCTDEG-----EPLVQTNKKCNAKDSFYKSSTQ 242
+QP E ++ H+ D E T T E Q + S+TQ
Sbjct: 280 VSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQ 339
Query: 243 KAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRF---- 298
++ P + +PP + E ++ + P+ + + + P + G+ +
Sbjct: 340 ---QEAPIEPPVPP--MEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTV 394
Query: 299 ------QTRSFLAP---VKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAK 349
QT +P VKP + + + + T V + D+ A
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 350 QRYSKPLYINTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLF 409
Q PL +S A + F + P N+ PS T + H +E L
Sbjct: 455 QHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLT 514
Query: 410 RHQAP 414
+AP
Sbjct: 515 HQEAP 519
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 29.6 bits (65), Expect = 5.7
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 31/305 (10%)
Query: 136 VKPQHRVPRPDTGFQTTIKRQKI---LSEELQQNRRWNSREVPDISIRARLGGWTSPLKV 192
++P+ + P Q++ +Q+ L + L++ +E P + + + T P
Sbjct: 220 LEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHE 279
Query: 193 TPLQPHHEGRSLSHIFTF-----DEEATCTDEG-----EPLVQTNKKCNAKDSFYKSSTQ 242
+QP E ++ H+ D E T T E Q + S+TQ
Sbjct: 280 VSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQ 339
Query: 243 KAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRF---- 298
++ P + +PP + E ++ + P+ + + + P + G+ +
Sbjct: 340 ---QEAPIEPPVPP--MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTV 394
Query: 299 ------QTRSFLAP---VKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAK 349
QT +P VKP + + + + T V + D+ A
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 350 QRYSKPLYINTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLF 409
Q PL +S A + F + P N+ PS T + H +E L
Sbjct: 455 QHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLT 514
Query: 410 RHQAP 414
+AP
Sbjct: 515 HQEAP 519
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 29.6 bits (65), Expect = 5.7
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 31/305 (10%)
Query: 136 VKPQHRVPRPDTGFQTTIKRQKI---LSEELQQNRRWNSREVPDISIRARLGGWTSPLKV 192
++P+ + P Q++ +Q+ L + L++ +E P + + + T P
Sbjct: 220 LEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHE 279
Query: 193 TPLQPHHEGRSLSHIFTF-----DEEATCTDEG-----EPLVQTNKKCNAKDSFYKSSTQ 242
+QP E ++ H+ D E T T E Q + S+TQ
Sbjct: 280 VSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQ 339
Query: 243 KAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRF---- 298
++ P + +PP + E ++ + P+ + + + P + G+ +
Sbjct: 340 ---QEAPIEPPVPP--MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTV 394
Query: 299 ------QTRSFLAP---VKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAK 349
QT +P VKP + + + + T V + D+ A
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 350 QRYSKPLYINTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLF 409
Q PL +S A + F + P N+ PS T + H +E L
Sbjct: 455 QHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLT 514
Query: 410 RHQAP 414
+AP
Sbjct: 515 HQEAP 519
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 29.6 bits (65), Expect = 5.7
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 31/305 (10%)
Query: 136 VKPQHRVPRPDTGFQTTIKRQKI---LSEELQQNRRWNSREVPDISIRARLGGWTSPLKV 192
++P+ + P Q++ +Q+ L + L++ +E P + + + T P
Sbjct: 220 LEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHE 279
Query: 193 TPLQPHHEGRSLSHIFTF-----DEEATCTDEG-----EPLVQTNKKCNAKDSFYKSSTQ 242
+QP E ++ H+ D E T T E Q + S+TQ
Sbjct: 280 VSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQ 339
Query: 243 KAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRF---- 298
++ P + +PP + E ++ + P+ + + + P + G+ +
Sbjct: 340 ---QEAPIEPPVPP--MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTV 394
Query: 299 ------QTRSFLAP---VKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAK 349
QT +P VKP + + + + T V + D+ A
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 350 QRYSKPLYINTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLF 409
Q PL +S A + F + P N+ PS T + H +E L
Sbjct: 455 QHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLT 514
Query: 410 RHQAP 414
+AP
Sbjct: 515 HQEAP 519
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 29.6 bits (65), Expect = 5.7
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 31/305 (10%)
Query: 136 VKPQHRVPRPDTGFQTTIKRQKI---LSEELQQNRRWNSREVPDISIRARLGGWTSPLKV 192
++P+ + P Q++ +Q+ L + L++ +E P + + + T P
Sbjct: 220 LEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHE 279
Query: 193 TPLQPHHEGRSLSHIFTF-----DEEATCTDEG-----EPLVQTNKKCNAKDSFYKSSTQ 242
+QP E ++ H+ D E T T E Q + S+TQ
Sbjct: 280 VSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQ 339
Query: 243 KAYEDVPWDKMLPPKLVPEETTLEKAADPISQCFTLKRYKGVPAITQMVGELWDRF---- 298
++ P + +PP + E ++ + P+ + + + P + G+ +
Sbjct: 340 ---QEAPIEPPVPP--MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTV 394
Query: 299 ------QTRSFLAP---VKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAK 349
QT +P VKP + + + + T V + D+ A
Sbjct: 395 SPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAI 454
Query: 350 QRYSKPLYINTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLF 409
Q PL +S A + F + P N+ PS T + H +E L
Sbjct: 455 QHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLT 514
Query: 410 RHQAP 414
+AP
Sbjct: 515 HQEAP 519
>gi|53759129 proline rich 13 isoform 2 [Homo sapiens]
Length = 98
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 68 HPYPPSVLPDYHLHDPYPPPYGPHYPLFP 96
HP P P PYPPPY P P P
Sbjct: 11 HPVPQPGYPGCQPLGPYPPPYPPPAPGIP 39
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 29.3 bits (64), Expect = 7.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 155 RQKILSEELQQNRRWNSREVPDISIRARLGGWTSPLKVTPLQP 197
RQ+ L ++ QQ + SR P SIR GG K TPL P
Sbjct: 71 RQQQLQQQQQQGNKTGSRTGPPASIR---GGGGGAEKATPLAP 110
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 29.3 bits (64), Expect = 7.4
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 25/71 (35%)
Query: 29 YPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPPSVLPDYHLHD---PYP 85
YP YC MP G N + YG++ PYPP YH PYP
Sbjct: 814 YPGYCQ------MPMPMGY-NPYAYGQYNM----------PYPPV----YHQSPGQAPYP 852
Query: 86 PPYGPHYPLFP 96
P P YP FP
Sbjct: 853 GPQQPSYP-FP 862
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,429,073
Number of Sequences: 37866
Number of extensions: 1001674
Number of successful extensions: 2896
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2863
Number of HSP's gapped (non-prelim): 65
length of query: 438
length of database: 18,247,518
effective HSP length: 105
effective length of query: 333
effective length of database: 14,271,588
effective search space: 4752438804
effective search space used: 4752438804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.