Guide to the Human Genome
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Name: DPPA2 Sequence: fasta or formatted (298aa) NCBI GI: 239835767
Description:

developmental pluripotency associated 2

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         24           2
 C cysteine            3.0          9           1
 D aspartate           4.4         13           2
 E glutamate           6.7         20           2
 F phenylalanine       2.0          6           1
 G glycine             3.4         10           1
 H histidine           2.0          6           1
 I isoleucine          3.7         11           1
 K lysine              7.4         22           2
 L leucine             9.4         28           2
 M methionine          4.4         13           2
 N asparagine          4.0         12           1
 P proline             6.7         20           2
 Q glutamine           5.0         15           2
 R arginine            7.7         23           2
 S serine              7.0         21           2
 T threonine           5.4         16           2
 V valine              6.7         20           2
 W tryptophan          1.7          5           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   developmental pluripotency associated 2 
DPPA4                 0.305   developmental pluripotency associated 4 
LOC728888             0.024   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100132247          0.021   hypothetical protein LOC100132247 
TSEN54                0.021   tRNA splicing endonuclease 54 homolog 
NPIPL3                0.021   nuclear pore complex interacting protein-like 3 [Ho...
LOC728741             0.021   PREDICTED: hypothetical protein 
LOC730153             0.014   PREDICTED: similar to NPIP-like protein ENSP0000034...
RBBP6                 0.014   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.014   retinoblastoma-binding protein 6 isoform 1 
NDEL1                 0.012   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.012   nudE nuclear distribution gene E homolog (A. nidulan...
POU2F2                0.012   POU domain, class 2, transcription factor 2 
NPIPL2                0.010   PREDICTED: nuclear pore complex interacting protein...
LOC100294236          0.010   PREDICTED: similar to diffuse panbronchiolitis crit...
NDE1                  0.009   nuclear distribution gene E homolog 1 
NDE1                  0.009   nuclear distribution gene E homolog 1 
IQSEC1                0.009   IQ motif and Sec7 domain 1 isoform a 
IQSEC1                0.009   IQ motif and Sec7 domain 1 isoform b 
TTN                   0.009   titin isoform N2-A 
TTN                   0.009   titin isoform novex-2 
TTN                   0.009   titin isoform novex-1 
TTN                   0.009   titin isoform N2-B 
DHX37                 0.009   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
LIN54                 0.009   lin-54 homolog isoform b 
LIN54                 0.009   lin-54 homolog isoform b 
LIN54                 0.009   lin-54 homolog isoform a 
PPP1R13B              0.007   apoptosis-stimulating protein of p53, 1 
DZIP1L                0.007   DAZ interacting protein 1-like 
KTN1                  0.007   kinectin 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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