Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DPPA4 Sequence: fasta or formatted (304aa) NCBI GI: 144953903
Description:

developmental pluripotency associated 4

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           1
 C cysteine            2.0          6           1
 D aspartate           2.6          8           1
 E glutamate           7.6         23           2
 F phenylalanine       1.6          5           1
 G glycine             4.3         13           1
 H histidine           2.6          8           1
 I isoleucine          3.0          9           1
 K lysine             10.5         32           3
 L leucine             9.5         29           2
 M methionine          1.3          4           1
 N asparagine          3.3         10           1
 P proline             9.5         29           3
 Q glutamine           4.9         15           2
 R arginine            4.6         14           1
 S serine              9.5         29           2
 T threonine           4.9         15           2
 V valine              5.9         18           3
 W tryptophan          2.3          7           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   developmental pluripotency associated 4 
DPPA2                 0.298   developmental pluripotency associated 2 
DIDO1                 0.025   death inducer-obliterator 1 isoform c 
LOC400986             0.020   PREDICTED: protein immuno-reactive with anti-PTH po...
LOC400986             0.020   PREDICTED: protein immuno-reactive with anti-PTH po...
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.015   splicing factor, arginine/serine-rich 15 isoform 1 [...
SKIL                  0.012   SKI-like isoform 3 
SKIL                  0.012   SKI-like isoform 1 
EIF5                  0.012   eukaryotic translation initiation factor 5 
EIF5                  0.012   eukaryotic translation initiation factor 5 
GTSE1                 0.012   G-2 and S-phase expressed 1 
ANKRD36               0.012   PREDICTED: ankyrin repeat domain 36 
ESCO1                 0.010   establishment of cohesion 1 homolog 1 
CD3EAP                0.010   CD3E antigen, epsilon polypeptide associated protein ...
ANKRD36B              0.010   ankyrin repeat domain 36B 
TNRC18                0.010   trinucleotide repeat containing 18 
UAP1L1                0.010   UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ...
TOP1                  0.008   DNA topoisomerase I 
KCNH4                 0.008   potassium voltage-gated channel, subfamily H, member ...
CCNT1                 0.008   cyclin T1 
NOLC1                 0.008   nucleolar and coiled-body phosphoprotein 1 
SP2                   0.008   Sp2 transcription factor 
AASDH                 0.008   aminoadipate-semialdehyde dehydrogenase 
DENND2A               0.008   DENN/MADD domain containing 2A 
MUC16                 0.008   mucin 16 
LOC100128392          0.008   PREDICTED: hypothetical protein 
LOC730658             0.008   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
LOC100128392          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press