Guide to the Human Genome
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Name: NPIPL2 Sequence: fasta or formatted (265aa) NCBI GI: 239745607
Description:

PREDICTED: nuclear pore complex interacting protein-like 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         13           2
 C cysteine            1.9          5           1
 D aspartate           4.2         11           1
 E glutamate           2.6          7           1
 F phenylalanine       4.9         13           2
 G glycine             5.3         14           1
 H histidine           5.3         14           2
 I isoleucine          6.8         18           5
 K lysine              7.9         21           1
 L leucine             9.8         26           3
 M methionine          1.5          4           1
 N asparagine          3.4          9           1
 P proline             5.3         14           2
 Q glutamine           5.3         14           2
 R arginine           10.9         29           3
 S serine              5.3         14           1
 T threonine           5.3         14           2
 V valine              6.0         16           2
 W tryptophan          1.9          5           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: nuclear pore complex interacting protein... 
LOC730153             0.637   PREDICTED: similar to NPIP-like protein ENSP0000034...
LOC728741             0.608   PREDICTED: hypothetical protein 
LOC729602             0.589   PREDICTED: hypothetical protein LOC283846 
LOC100288332          0.572   PREDICTED: hypothetical protein XP_002343465 
LOC642799             0.572   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC642778             0.572   PREDICTED: similar to GPS, PLAT and transmembrane d...
LOC728888             0.402   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100132247          0.398   hypothetical protein LOC100132247 
NPIPL3                0.398   nuclear pore complex interacting protein-like 3 [Ho...
LOC728734             0.371   PREDICTED: similar to NPIP-like protein ENSP0000028...
NPIPL1                0.369   PREDICTED: nuclear pore complex interacting protein...
LOC729602             0.359   PREDICTED: NPIP-like protein ENSP00000283050 isofor...
LOC729978             0.354   PREDICTED: NPIP-like protein 2 isoform 2 
NPIP                  0.338   nuclear pore complex interacting protein 
LOC339047             0.333   hypothetical protein LOC339047 
RPL19                 0.015   ribosomal protein L19 
CCDC86                0.015   coiled-coil domain containing 86 
LOC100133698          0.013   PREDICTED: hypothetical protein 
ZNF714                0.013   zinc finger protein 714 
DPPA2                 0.011   developmental pluripotency associated 2 
MAP7D3                0.010   MAP7 domain containing 3 
SFRS4                 0.010   splicing factor, arginine/serine-rich 4 
MYH1                  0.010   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.010   myosin, heavy polypeptide 4, skeletal muscle 
OTUD6B                0.008   OTU domain containing 6B 
SFRS17A               0.008   DNA segment on chromosome X and Y (unique) 155 expre...
LOC100133599          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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